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Wang Y, Huang D, Shu K, Xu Y, Duan Y, Fan Q, Lin Q, Tuchin VV. Optimization of machine learning classification models for tumor cells based on cell elements heterogeneity with laser-induced breakdown spectroscopy. JOURNAL OF BIOPHOTONICS 2023; 16:e202300239. [PMID: 37515457 DOI: 10.1002/jbio.202300239] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2023] [Revised: 07/23/2023] [Accepted: 07/26/2023] [Indexed: 07/30/2023]
Abstract
The rapid and accurate diagnosis of cancer is an important topic in clinical medicine. In the present work, an innovative method based on laser-induced breakdown spectroscopy (LIBS) combined with machine learning was developed to distinguish and classify different tumor cell lines. The LIBS spectra of cells were first acquired. Then the spectral pre-processing was performed as well as detailed optimization to improve the classification accuracy. After that, the convolutional neural network (CNN), support vector machine (SVM), and K-nearest neighbors were further compared for the optimized classification ability of tumor cells. Both the CNN algorithm and SVM algorithm have achieved impressive discrimination performances for tumor cells distinguishing, with an accuracy of 97.72%. The results show that the heterogeneity of elements in tumor cells plays an important role in distinguishing the cells. It also means that the LIBS technique can be used as a fast classification method for classifying tumor cells.
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Affiliation(s)
- Yimeng Wang
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu, China
| | - Da Huang
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu, China
| | - Kaiqiang Shu
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu, China
| | - Yingtong Xu
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu, China
| | - Yixiang Duan
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu, China
| | - Qingwen Fan
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu, China
| | - Qingyu Lin
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu, China
| | - Valery V Tuchin
- Institute of Physics and Science Medical Center, Saratov State University, Saratov, Russia
- Laboratory of Laser Diagnostics of Technical and Living Systems, Institute of Precision Mechanics and Control, FRC "Saratov Scientific Centre of the Russian Academy of Sciences", Saratov, Russia
- Laboratory of Laser Molecular Imaging and Machine Learning, Tomsk State University, Tomsk, Russia
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2
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Gardette V, Motto-Ros V, Alvarez-Llamas C, Sancey L, Duponchel L, Busser B. Laser-Induced Breakdown Spectroscopy Imaging for Material and Biomedical Applications: Recent Advances and Future Perspectives. Anal Chem 2023; 95:49-69. [PMID: 36625118 DOI: 10.1021/acs.analchem.2c04910] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Affiliation(s)
- Vincent Gardette
- Université de Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, 69622 Villeurbanne, France
| | - Vincent Motto-Ros
- Université de Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, 69622 Villeurbanne, France
| | - César Alvarez-Llamas
- Université de Lyon, Université Claude Bernard Lyon 1, CNRS, Institut Lumière Matière, 69622 Villeurbanne, France
| | - Lucie Sancey
- Univ. Grenoble Alpes, Institute for Advanced Biosciences, Inserm U 1209/CNRS 5309, 38000 Grenoble, France
| | - Ludovic Duponchel
- Univ. Lille, CNRS, UMR 8516 - LASIRE - Laboratoire de Spectroscopie pour Les Interactions, La Réactivité et L'Environnement, Lille F-59000, France
| | - Benoit Busser
- Univ. Grenoble Alpes, Institute for Advanced Biosciences, Inserm U 1209/CNRS 5309, 38000 Grenoble, France.,Department of Laboratory Medicine, Grenoble Alpes University Hospital, 38000 Grenoble, France.,Institut Universitaire de France, 75231 Paris, France
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3
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Li JZ, Dong LM, Zheng LL, Fu WL, Zhang JJ, Zhang L, Hu Q, Chen P, Gao ZF, Xia F. Molecular Visual Sensing, Boolean Logic Computing, and Data Security Using a Droplet-Based Superwetting Paradigm. ACS APPLIED MATERIALS & INTERFACES 2022; 14:40447-40459. [PMID: 36006781 DOI: 10.1021/acsami.2c11532] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Inspired by information processing and logic operations of life, many artificial biochemical systems have been designed for applications in molecular information processing. However, encoding the binary synergism between matter, energy, and information in a superwetting system remains challenging. Herein, a superwetting paradigm was proposed for multifunctional applications including molecular visual sensing and data security on a superhydrophobic surface. A Triton X-100-encapsulated gelatin (TeG) hydrogel was prepared and selectively decomposed by trypsin, releasing the surfactant to decrease the surface tension of a droplet. Integrating the droplet with the superhydrophobic surface, the superwetting behavior was utilized for visual detection and information encoding. Interestingly, the proposed TeG hydrogel can function as an artificial gelneuron for molecular-level logic computing, where the combination of matters (superhydrophobic surface, trypsin, and leupeptin) acts as inputs to interact with energy (liquid surface tension and solid surface energy) and information (binary character), resulting in superwettability transitions (droplet surface tension, contact angle, rolling angle, and bounce) as outputs. Impressively, the TeG gelneuron can be further developed as molecular-level double cryptographic steganography to encode, encrypt, and hide specific information (including the maze escape route and content of the classical literature) due to its programmability, stimuli responsive ability, and droplet concealment. This study will encourage the development of advanced molecular paradigms and their applications, such as superwetting visual sensing, molecular computing, interaction, and data security.
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Affiliation(s)
- Jin Ze Li
- Shandong Provincial Key Laboratory of Detection Technology for Tumor Markers, College of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, P. R. China
| | - Lu Ming Dong
- Shandong Provincial Key Laboratory of Detection Technology for Tumor Markers, College of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, P. R. China
| | - Lin Lin Zheng
- Shandong Provincial Key Laboratory of Detection Technology for Tumor Markers, College of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, P. R. China
| | - Wen Long Fu
- Advanced Materials Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250014, P. R. China
| | - Jing Jing Zhang
- Advanced Materials Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250014, P. R. China
| | - Lei Zhang
- Department of Chemical Engineering and Waterloo Institute for Nanotechnology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L3G1, Canada
| | - Qiongzheng Hu
- School of Pharmaceutical Sciences, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250014, P. R. China
| | - Pu Chen
- Department of Chemical Engineering and Waterloo Institute for Nanotechnology, University of Waterloo, 200 University Avenue West, Waterloo, Ontario N2L3G1, Canada
| | - Zhong Feng Gao
- Shandong Provincial Key Laboratory of Detection Technology for Tumor Markers, College of Chemistry and Chemical Engineering, Linyi University, Linyi 276005, P. R. China
- Advanced Materials Institute, Qilu University of Technology (Shandong Academy of Sciences), Jinan 250014, P. R. China
| | - Fan Xia
- Engineering Research Center of Nano-Geomaterials of Ministry of Education, Faculty of Materials Science and Chemistry, China University of Geosciences, Wuhan 430074, P. R. China
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4
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Chen Y, Yin P, Peng Z, Lin Q, Duan Y, Fan Q, Wei Z. High-Throughput Recognition of Tumor Cells Using Label-Free Elemental Characteristics Based on Interpretable Deep Learning. Anal Chem 2022; 94:3158-3164. [PMID: 35129946 DOI: 10.1021/acs.analchem.1c04553] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
With cancer seriously hampering the increasing life expectancy of people, developing an instant diagnostic method has become an urgent objective. In this work, we developed a label-free laser-induced breakdown spectroscopy (LIBS) method for high-throughput recognition of tumor cells. LIBS spectra were straightly collected from cells dropped on a silicon substrate and built into a deep learning model for simultaneous classification of various cancers. To interpret the result of the deep learning algorithm, gradient-weighted class activation mapping was utilized to a one-dimensional convolution neural network (1D-CNN), and the saliency maps thus obtained amplified the differences between the spectra of cell lines. Overall results showed that the 1D-CNN algorithms achieved a mean sensitivity of 94.00%, a mean specificity of 98.47%, and a mean accuracy of 97.56%. Thus, the proposed method performed satisfactorily and is seen as an interpretable classification process for cancer cell lines.
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Affiliation(s)
- Youyuan Chen
- Key Laboratory of Bio-Resource and Eco-Environment, Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610064, P. R. China
| | - Pengkun Yin
- Key Laboratory of Bio-Resource and Eco-Environment, Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610064, P. R. China
| | - Zhengying Peng
- Key Laboratory of Bio-Resource and Eco-Environment, Ministry of Education, College of Life Sciences, Sichuan University, Chengdu 610064, P. R. China
| | - Qingyu Lin
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu 610064, P. R. China
| | - Yixiang Duan
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu 610064, P. R. China
| | - Qingwen Fan
- Research Center of Analytical Instrumentation, School of Mechanical Engineering, Sichuan University, Chengdu 610064, P. R. China
| | - Zhimei Wei
- Institute of Materials Science and Technology, Analysis and Testing Center, Sichuan University, Chengdu 610064, P. R. China.,State Key Laboratory of Polymer Materials Engineering, Sichuan University, Chengdu 610065, P. R. China
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