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Clover A, Jones AP, Berger RF, Kaminsky W, O’Neil GW. Regioselective Fluorohydrin Synthesis from Allylsilanes and Evidence for a Silicon-Fluorine Gauche Effect. J Org Chem 2024; 89:4309-4318. [PMID: 38457664 PMCID: PMC11002936 DOI: 10.1021/acs.joc.3c02163] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2023] [Revised: 02/20/2024] [Accepted: 02/26/2024] [Indexed: 03/10/2024]
Abstract
Allylsilanes can be regioselectively transformed into the corresponding 3-silylfluorohydrin in good yield using a sequence of epoxidation followed by treatment with HF·Et3N with or without isolation of the intermediate epoxide. Various silicon-substitutions are tolerated, resulting in a range of 2-fluoro-3-silylpropan-1-ol products from this method. Whereas other fluorohydrin syntheses by epoxide opening using HF·Et3N generally require more forcing conditions (e.g., higher reaction temperature), opening of allylsilane-derived epoxides with this reagent occurs at room temperature. We attribute this rate acceleration along with the observed regioselectivity to a β-silyl effect that stabilizes a proposed cationic intermediate. The use of enantioenriched epoxides indicates that both SN1- and SN2-type mechanisms may be operable depending on substitution at silicon. Conformational analysis by NMR and theory along with a crystal structure obtained by X-ray diffraction points to a preference for silicon and fluorine to be proximal to one another in the products, perhaps favored due to electrostatic interactions.
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Affiliation(s)
- Alexie
W. Clover
- Department
of Chemistry, Western Washington University, Bellingham, Washington 98229, United States
| | - Adam P. Jones
- Department
of Chemistry, Western Washington University, Bellingham, Washington 98229, United States
| | - Robert F. Berger
- Department
of Chemistry, Western Washington University, Bellingham, Washington 98229, United States
| | - Werner Kaminsky
- Department
of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Gregory. W. O’Neil
- Department
of Chemistry, Western Washington University, Bellingham, Washington 98229, United States
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He M, Piscelli BA, Cormanich RA, O’Hagan D. Conformational Analysis Explores the Role of Electrostatic Nonclassical CF···HC Hydrogen Bonding Interactions in Selectively Halogenated Cyclohexanes. J Org Chem 2024; 89:4009-4018. [PMID: 38441063 PMCID: PMC10949234 DOI: 10.1021/acs.joc.3c02868] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 02/15/2024] [Accepted: 02/21/2024] [Indexed: 03/06/2024]
Abstract
The conformational equilibria of selectively halogenated cyclohexanes are explored both experimentally (VT-NMR) for 1,1,4,-trifluorocyclohexane 7 and by computational analysis (M06-2X/aug-cc-pVTZ level), with the latter approach extending to a wider range of more highly fluorinated cyclohexanes. Perhaps unexpectedly, 7ax is preferred over the 7eq conformation by ΔG = 1.06 kcal mol-1, contradicting the accepted norm for substituents on cyclohexanes. The axial preference is stronger again in 1,1,3,3,4,5,5,-heptafluorocyclohexane 9 (ΔG = 2.73 kcal mol-1) as the CF2 groups further polarize the isolated CH2 hydrogens. Theoretical decomposition of electrostatic and hyperconjugative effects by natural bond orbital analysis indicated that nonclassical hydrogen bonding (NCHB) between the C-4 fluorine and the diaxial hydrogens at C-2 and C-6 in cyclohexane 7 and 9 largely accounts for the observed bias. The study extended to changing fluorine (F) for chlorine (Cl) and bromine (Br) at the pseudoanomeric position in the cyclohexanes. Although these halogens do not become involved in NCHBs, they polarize the geminal -CHX- hydrogen at the pseudoanomeric position to a greater extent than fluorine, and consequent electrostatic interactions influence conformer stabilities.
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Affiliation(s)
- Mengfan He
- School
of Chemistry, Biomedical Sciences Research Complex, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, United Kingdom
| | - Bruno A. Piscelli
- Instituto
de Química, Universidade Estadual
de Campinas (UNICAMP), Monteiro Lobato Street, Campinas, Sao Paulo 13083-862, Brazil
| | - Rodrigo A. Cormanich
- Instituto
de Química, Universidade Estadual
de Campinas (UNICAMP), Monteiro Lobato Street, Campinas, Sao Paulo 13083-862, Brazil
| | - David O’Hagan
- School
of Chemistry, Biomedical Sciences Research Complex, University of St Andrews, North Haugh, St Andrews, Fife KY16 9ST, United Kingdom
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TOYOTA S. Discovery of internal rotation and conformers of 1,2-dichloroethane: the dawn of the concept of conformation. PROCEEDINGS OF THE JAPAN ACADEMY. SERIES B, PHYSICAL AND BIOLOGICAL SCIENCES 2024; 100:101-113. [PMID: 38346751 PMCID: PMC10978969 DOI: 10.2183/pjab.100.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/16/2023] [Accepted: 10/13/2023] [Indexed: 02/15/2024]
Abstract
In 1932, Mizushima and Higasi reported the dependence of the dipole moments of 1,2-dichloroethane on both temperature and solvent in the Proceedings of the Imperial Academy, Japan. This report was followed by their first proposal of the existence of conformers that exchanged by internal rotation about a C-C single bond based on experimental data. Their monumental work marked the beginning of the essential concept of conformation in modern stereochemistry. Their proposal was later confirmed by the direct observation of the anti and gauche conformers of 1,2-dichloroethane by Raman spectroscopy, and further supported by other experimental and theoretical methods. The relative stabilities of the anti and gauche conformers of 1,2-dichloroethane and other 1,2-disubstituted ethanes were discussed in terms of steric, electrostatic, and stereoelectronic effects based on analysis of calculated data. Those studies influenced the development of subsequent research in organic chemistry, such as the conformational analysis of cyclohexane derivatives and the isolation of chiral gauche conformers.
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Affiliation(s)
- Shinji TOYOTA
- Department of Chemistry, School of Science, Tokyo Institute of Technology, Tokyo, Japan
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O'Hagan D. The Emergence and Properties of Selectively Fluorinated 'Janus' Cyclohexanes. CHEM REC 2023; 23:e202300027. [PMID: 37016509 DOI: 10.1002/tcr.202300027] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2023] [Revised: 03/14/2023] [Indexed: 04/06/2023]
Abstract
This account describes the evolution of a research programme that started by linking fluoromethylene (-CHF-) groups along aliphatic chains and then progressing to alicyclic rings with contiguous fluorine atoms. Different stereoisomers of aliphatic chains tend to adopt low polarity conformations. In order to force polar conformations, the programme began to address ring systems and in particular cyclohexanes, to restrain conformational freedom and co-aligned C-F bonds. The flagship molecule, all-cis-1,2,3,4,5,6-hexafluorocyclohexane 7, emerged to be the most polar aliphatic compound recorded. The polarity arises because there are three co-aligned triaxial C-F bonds and the six fluorines occupy one face of the ring. Conversely the electropositive hydrogens occupy the other face. These have been termed Janus face cyclohexanes after the Roman god with two faces. The review outlines progress by our group and others in preparing derivatives of the parent cyclohexane 7, in order to explore properties and potential applications of these Janus cyclohexanes.
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Affiliation(s)
- David O'Hagan
- University of St Andrews, St. Andrews, United Kingdom
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Armstrong BI, Willans M, Pearson EL, Becker T, Hackett MJ, Raiteri P. Revisiting the Conformational Isomerism of Dihaloethanes: A Hybrid Computational and Experimental Laboratory for the Undergraduate Curriculum. ACS PHYSICAL CHEMISTRY AU 2023; 3:157-166. [PMID: 36968445 PMCID: PMC10037444 DOI: 10.1021/acsphyschemau.2c00055] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 12/20/2022] [Accepted: 12/22/2022] [Indexed: 01/13/2023]
Abstract
The conformational isomerism of disubstituted ethanes is a well-known concept that is part of every chemistry curriculum. Due to the species' simplicity, studying the (free) energy difference between the gauche and anti isomers has been the testing ground of experimental and computational techniques, such as Raman and IR spectroscopy, quantum chemistry, and atomistic simulations. While students normally receive formal training in spectroscopic techniques during their early undergraduate years, computational methods often receive less attention. In this work, we revisit the conformational isomerism of 1,2-dichloroethane and 1,2-dibromoethane and design a hybrid computational and experimental laboratory for our undergraduate chemistry curriculum with a focus on introducing computational techniques as a complementary research tool to experimentation. We show how commonly available Raman spectrometers and atomistic simulations performed on desktop computers can be combined to study the conformational isomerism of disubstituted ethanes while discussing the advantages and limitations of the different approaches.
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Affiliation(s)
- Blake I. Armstrong
- School of Molecular and Life Sciences and Curtin Institute for Computation, Curtin University, PO Box U1987, Perth, Western Australia6845, Australia
| | - Meg Willans
- School of Molecular and Life Sciences and Curtin University, PO Box U1987, Perth, Western Australia6845, Australia
| | - Emma L. Pearson
- School of Molecular and Life Sciences and Curtin University, PO Box U1987, Perth, Western Australia6845, Australia
| | - Thomas Becker
- School of Molecular and Life Sciences and Curtin University, PO Box U1987, Perth, Western Australia6845, Australia
| | - Mark J. Hackett
- School of Molecular and Life Sciences and Curtin University, PO Box U1987, Perth, Western Australia6845, Australia
| | - Paolo Raiteri
- School of Molecular and Life Sciences and Curtin Institute for Computation, Curtin University, PO Box U1987, Perth, Western Australia6845, Australia
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Masnabadi N, Thalji MR, Alhasan HS, Mahmoodi Z, Soldatov AV, Ali GAM. Structural, Electronic, Reactivity, and Conformational Features of 2,5,5-Trimethyl-1,3,2-diheterophosphinane-2-sulfide, and Its Derivatives: DFT, MEP, and NBO Calculations. Molecules 2022; 27:molecules27134011. [PMID: 35807257 PMCID: PMC9268642 DOI: 10.3390/molecules27134011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2022] [Revised: 06/11/2022] [Accepted: 06/17/2022] [Indexed: 01/18/2023] Open
Abstract
In this study, we used density functional theory (DFT) and natural bond orbital (NBO) analysis to determine the structural, electronic, reactivity, and conformational features of 2,5,5-trimethyl-1,3,2-di-heteroatom (X) phosphinane-2-sulfide derivatives (X = O (compound 1), S (compound 2), and Se (compound 3)). We discovered that the features improve dramatically at 6-31G** and B3LYP/6-311+G** levels. The level of theory for the molecular structure was optimized first, followed by the frontier molecular orbital theory development to assess molecular stability and reactivity. Molecular orbital calculations, such as the HOMO–LUMO energy gap and the mapping of molecular electrostatic potential surfaces (MEP), were performed similarly to DFT calculations. In addition, the electrostatic potential of the molecule was used to map the electron density on a surface. In addition to revealing molecules’ size and shape distribution, this study also shows the sites on the surface where molecules are most chemically reactive.
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Affiliation(s)
- Nasrin Masnabadi
- Department of Chemistry, Roudehen Branch, Islamic Azad University, Roudehen P.O. Box 189, Iran
- Correspondence: or (N.M.); or (G.A.M.A.)
| | - Mohammad R. Thalji
- School of Chemical Engineering, Yeungnam University, Gyeongsan 38541, Gyeongbuk, Korea;
| | - Huda S. Alhasan
- Environmental Research and Studies Center, University of Babylon, Babil 51002, Iraq;
| | - Zahra Mahmoodi
- Department of Chemistry, University of Applied Science and Technology, Center of Arya Gach Poldokhtar, Tehran P.O. Box 68, Iran;
| | - Alexander V. Soldatov
- The Smart Materials Research Institute, Southern Federal University, Sladkova Str. 178/24, Rostov-on-Don 344006, Russia;
| | - Gomaa A. M. Ali
- Chemistry Department, Faculty of Science, Al-Azhar University, Assiut 71524, Egypt
- Correspondence: or (N.M.); or (G.A.M.A.)
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