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Olarte Hernandez R, Soldera A, Champagne B. Vibronic Structure of the UV/Visible Absorption Spectra of Phenol and Phenolate: A Hybrid Density Functional Theory─Doktorov's Quantum Algorithm Approach. J Phys Chem A 2024. [PMID: 39718998 DOI: 10.1021/acs.jpca.4c06960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2024]
Abstract
The Doktorov's quantum algorithm has been enacted in combination with time-dependent density functional theory (TD-DFT) to simulate the vibronic structure of the UV/visible absorption spectra of the phenol and phenolate molecules. On the one hand, DFT and TD-DFT are employed with classical algorithms to calculate the ground and excited-state electronic structures as well as their vibrational frequencies and normal modes, whereas, on the other hand, quantum algorithms are employed for evaluating the vibrational transition intensities. In comparison to a previous study, J. Phys. Chem. A 2024, 128, 4369-4377, which demonstrated Doktorov's quantum algorithm as a proof of concept to predict the vibronic structure of ionization spectra, it is applied here to medium-size molecules with more than 30 vibrational normal modes, without accounting for Duschinsky rotations due to software limitations. This application to simulate the vibronic structures of the spectra of phenol and phenolate also enables assessing the impact of the differences in vibrational frequencies between the ground and excited electronic states.
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Affiliation(s)
- Renato Olarte Hernandez
- Theoretical Chemistry Lab, Unit of Theoretical and Structural Physical Chemistry, Namur Institute of Structured Matter, University of Namur, Rue de Bruxelles, 61, Namur B-5000, Belgium
- Laboratory of Physical Chemistry of Matter, Department of Chemistry, Université de Sherbrooke, Sherbrooke, Quebec J1K 2R1, Canada
| | - Armand Soldera
- Laboratory of Physical Chemistry of Matter, Department of Chemistry, Université de Sherbrooke, Sherbrooke, Quebec J1K 2R1, Canada
| | - Benoît Champagne
- Theoretical Chemistry Lab, Unit of Theoretical and Structural Physical Chemistry, Namur Institute of Structured Matter, University of Namur, Rue de Bruxelles, 61, Namur B-5000, Belgium
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2
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Sbai A, Guthmuller J. Singlet and triplet excited states of a series of BODIPY dyes as calculated by TDDFT and DLPNO-STEOM-CCSD methods. Phys Chem Chem Phys 2024; 26:25925-25935. [PMID: 39364603 DOI: 10.1039/d4cp02920h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/05/2024]
Abstract
The singlet and triplet excited states of three iodine substituted BODIPY dyes differing by their substituents (-phenyl, -phenylOH and -phenylNO2) at the meso position of the BODIPY core (BOD) are investigated using (TDA)-TDDFT and DLPNO-STEOM-CCSD calculations. An assessment of hybrid (B3LYP and MN15) and double hybrid (SOS-PBE-QIDH and SOS-ωPBEPP86) exchange-correlation functionals is performed with respect to the DLPNO-STEOM-CCSD method for four types of transitions, namely , , and . It is found that MN15 and SOS-PBE-QIDH provide a balanced description of the excited state energies when compared to the DLPNO-STEOM-CCSD results. An investigation of the effects of the solvent (dichloromethane), of the substituent and of geometrical relaxation in the excited states is then performed. In particular, the study discusses the possibility of populating charge transfer states ( and ) following photoexcitation in the first and second absorption bands in these systems.
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Affiliation(s)
- Aoussaj Sbai
- Institute of Physics and Applied Computer Science, Faculty of Applied Physics and Mathematics, Gdańsk University of Technology, Narutowicza 11/12, 80233 Gdańsk, Poland.
| | - Julien Guthmuller
- Institute of Physics and Applied Computer Science, Faculty of Applied Physics and Mathematics, Gdańsk University of Technology, Narutowicza 11/12, 80233 Gdańsk, Poland.
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Ogugua SN, Abram C, Fond B, Kroon RE, Beyrau F, Swart HC. Effect of annealing conditions on the luminescence properties and thermometric performance of Sr 3Al 2O 5Cl 2:Eu 2+ and SrAl 2O 4:Eu 2+ phosphors. Dalton Trans 2024; 53:4551-4563. [PMID: 38349055 DOI: 10.1039/d3dt03836j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2024]
Abstract
We report on the synthesis, photoluminescence optimization and thermometric properties of Sr3Al2O5Cl2:Eu2+ and SrAl2O4:Eu2+ phosphor powders. The photoluminescence of Sr2.9Al2O5Cl2:0.1Eu2+ phosphors exhibits a blue-shift with an increasing annealing temperature owing to a decrease in the crystal field strength of the host caused by evaporation of Cl from the material. The quenching of the blue band in favour of the red band observed in the luminescence spectra of Sr2.9Al2O5Cl2:0.1Eu2+ with an increased annealing temperature was explained using the mechanism of the Landau-Zener transitions. The quantum yield and the lifetime of the phosphors depend on the annealing temperature. Phosphor samples annealed at 850 °C, 1000 °C, 1200 °C and 1500 °C were found to be potential luminescence thermometers using the luminescence spectral method. For Sr3Al2O5Cl2:Eu2+ annealed at 1000 °C, the temperature-dependent dual-band intensity ratio demonstrated a high-temperature sensitivity of ∼1.47%/°C in the temperature range of 23 °C to 40 °C which is superior to other reported phosphors with a microsecond decay time, suggesting that the material has potential for sensitive thermometry applications at ambient temperatures.
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Affiliation(s)
- Simon N Ogugua
- Department of Physics, University of the Free State, Bloemfontein, ZA9300, South Africa.
| | - Christopher Abram
- Department of Mechanical and Aerospace Engineering, Princeton University, NJ 08544, USA.
| | - Benoît Fond
- Department of Aeronautics, ONERA the French Aerospace Lab, 92190 Meudon, France.
| | - Robin E Kroon
- Department of Physics, University of the Free State, Bloemfontein, ZA9300, South Africa.
| | - Frank Beyrau
- Lehrstuhl für Technische Thermodynamik, Otto-von-Guericke-Universität Magdeburg, 39106 Magdeburg, Germany.
| | - Hendrik C Swart
- Department of Physics, University of the Free State, Bloemfontein, ZA9300, South Africa.
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Fu L, Huang H, Zuo Z, Peng Y. A Single Organic Fluorescent Probe for the Discrimination of Dual Spontaneous ROS in Living Organisms: Theoretical Approach. Molecules 2023; 28:6983. [PMID: 37836826 PMCID: PMC10574373 DOI: 10.3390/molecules28196983] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2023] [Revised: 09/19/2023] [Accepted: 10/02/2023] [Indexed: 10/15/2023] Open
Abstract
Single-organic-molecule fluorescent probes with double-lock or even multi-lock response modes have attracted the attention of a wide range of researchers. The number of corresponding reports has rapidly increased in recent years. The effective application of the multi-lock response mode single-molecule fluorescent probe has improved the comprehensive understanding of the related targets' functions or influences in pathologic processes. Building a highly efficient functional single-molecule fluorescent probe would benefit the diagnosis and treatment of corresponding diseases. Here, we conducted a theoretical analysis of the synthesizing and sensing mechanism of this kind of functional single-molecule fluorescent probe, thereby guiding the design and building of new efficient probes. In this work, we discuss in detail the electronic structure, electron excitation, and fluorescent character of a recently developed single-molecule fluorescent probe, which could achieve the discrimination and profiling of spontaneous reactive oxygen species (ROS, •OH, and HClO) simultaneously. The theoretical results provide insights that will help develop new tools for fluorescent diagnosis in biological and medical fields.
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Affiliation(s)
| | | | | | - Yongjin Peng
- Modern Industry School of Health Management, Jinzhou Medical University, Jinzhou 121001, China
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Behera AK, Sahu PN, Sahu GC, Sen A. A quantum chemical study: thoughtful exploration for optimal donors in Y-type dual donor-based dye sensitizers. Phys Chem Chem Phys 2023; 25:26341-26352. [PMID: 37750227 DOI: 10.1039/d3cp03899h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/27/2023]
Abstract
This research explores the influence of different dual donors on the effectiveness of dye sensitizers. We selected 35 diverse donors to construct Y-type dual donor-based dyes, connecting them with thiophene as the π-spacer and cyanoacrylic acid as the acceptor. Density functional theory calculations indicate that these dual donor-based dyes exhibit superior optoelectronic properties compared to their single donor counterparts. Notably, significant variations in charge distribution among the different dual donors affect their donor capabilities. Our calculations specifically highlight the enhanced thermodynamic parameters, including light harvesting efficiency (LHE), the free energy of dye injection (ΔGinject), and regeneration (ΔGreg), for donor moieties containing nitrogen atoms, such as NS-3 (N,N-dimethylaniline), NS-5 (diphenylamine), NS-6 (triphenylamine), and NS-8 (4-methoxy-N-(4-methoxyphenyl)-N-phenylaniline). These results suggest that nitrogen-containing donor moieties act as promising candidates for donors for efficient dye sensitizers. However, further experimental validation in the near future will be necessary to confirm our findings.
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Affiliation(s)
- Anil Kumar Behera
- Department of Chemistry (CMDD Lab), GITAM School of Science, GITAM (Deemed to be University), Visakhapatnam-530045, AP, India.
| | - Preeti Nanda Sahu
- Department of Chemistry (CMDD Lab), GITAM School of Science, GITAM (Deemed to be University), Visakhapatnam-530045, AP, India.
| | - Ganesh Chandra Sahu
- Department of Chemistry (CMDD Lab), GITAM School of Science, GITAM (Deemed to be University), Visakhapatnam-530045, AP, India.
| | - Anik Sen
- Department of Chemistry (CMDD Lab), GITAM School of Science, GITAM (Deemed to be University), Visakhapatnam-530045, AP, India.
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Mackenzie CFR, Kwak SY, Kim S, Zysman-Colman E. The design and synthesis of green emissive iridium(III) complexes guided by calculations of the vibrationally-resolved emission spectra. Dalton Trans 2023; 52:4112-4121. [PMID: 36883433 DOI: 10.1039/d3dt00304c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/04/2023]
Abstract
A key challenge in developing emissive materials for organic light-emitting diodes is to optimize their colour saturation, which means targeting narrowband emitters. In this combined theoretical and experimental study, we investigate the use of heavy atoms in the form of trimethylsilyl groups as a tool to reduce the intensity of the vibrations in the 2-phenylpyridinato ligands of emissive iridium(III) complexes that contribute to the vibrationally coupled modes that broaden the emission profile. An underutilised computational technique, Frank-Condon vibrationally coupled electronic spectral modelling, was used to identify the key vibrational modes that contribute to the broadening of the emission spectra in known benchmark green-emitting iridium(III) complexes. Based on these results, a family of eight new green-emitting iridium complexes containing trimethylsilyl groups substituted at different positions of the cyclometalating ligands has been prepared to explore the impact that these substituents have on reducing the intensity of the vibrations and the resulting reduction in the contribution of vibrationally coupled emission modes to the shape of the emission spectra. We have demonstrated that locating a trimethylsilyl group at the N4 or N5 position of the 2-phenylpyridine ligand damps the vibrational modes of the iridium complex and provides a modest narrowing of the emission spectrum of 8-9 nm (or 350 cm-1). The strong correlation between experimental and calculated emission spectra highlights the utility of this computational method to understand how the vibrational modes contribute to the profile of the emission spectra in phosphorescent iridium(III) emitters.
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Affiliation(s)
- Campbell Frank Ross Mackenzie
- Organic Semiconductor Centre, EaStCHEM School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK.
| | - Seung-Yeon Kwak
- Samsung Advanced Institute of Technology, Samsung Electronics Co. Ltd., Suwon, Gyeonggi-do 16678, Republic of Korea
| | - Sungmin Kim
- Samsung Advanced Institute of Technology, Samsung Electronics Co. Ltd., Suwon, Gyeonggi-do 16678, Republic of Korea
| | - Eli Zysman-Colman
- Organic Semiconductor Centre, EaStCHEM School of Chemistry, University of St Andrews, St Andrews, Fife, KY16 9ST, UK.
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Ksenofontov AA, Lukanov MM, Bocharov PS. Can machine learning methods accurately predict the molar absorption coefficient of different classes of dyes? SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 279:121442. [PMID: 35660154 DOI: 10.1016/j.saa.2022.121442] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/07/2022] [Revised: 05/25/2022] [Accepted: 05/26/2022] [Indexed: 06/15/2023]
Abstract
In this article, we provide a convenient tool for all researchers to predict the value of the molar absorption coefficient for a wide number of dyes without any computer costs. The new model is based on RFR method (ALogPS, OEstate + Fragmentor + QNPR) and is able to predict the molar absorption coefficient with an accuracy (5-fold cross-validation RMSE) of 0.26 log unit. This accuracy was achieved due to the fact that the model was trained on data for more than 20,000 unique dye molecules. To our knowledge, this is the first model for predicting the molar absorption coefficient trained on such a large and diverse set of dyes. The model is available at https://ochem.eu/article/145413. We hope that the new model will allow researchers to predict dyes with practically significant spectral characteristics and verify existing experimental data.
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Affiliation(s)
- Alexander A Ksenofontov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, Akademicheskaya Street, 153045 Ivanovo, Russia.
| | - Michail M Lukanov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, Akademicheskaya Street, 153045 Ivanovo, Russia; Ivanovo State University of Chemistry and Technology, 7, Sheremetevskiy Avenue, Ivanovo 153000, Russia
| | - Pavel S Bocharov
- G.A. Krestov Institute of Solution Chemistry of the Russian Academy of Sciences, Akademicheskaya Street, 153045 Ivanovo, Russia
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Usoltsev S, Shagurin A, Marfin Y. Semi-Empirical Calculation of Bodipy Aggregate Spectroscopic Properties through Direct Sampling of Configurational Ensembles. Int J Mol Sci 2022; 23:ijms231810955. [PMID: 36142865 PMCID: PMC9502801 DOI: 10.3390/ijms231810955] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2022] [Revised: 09/10/2022] [Accepted: 09/13/2022] [Indexed: 01/30/2023] Open
Abstract
Efficient prediction of the aggregation-induced callback of organic chromophores for utilization in molecular sensorics is a desirable development goal in modern computational chemistry. Dye aggregates are complicated to study when utilizing conventional quantum chemistry approaches, since they are usually composed of too many atoms to be effectively analyzed, even with high-throughput parallel systems. Here, we present a successful attempt to develop a protocol to assess the spectroscopic changes happening in BODIPY dyes upon aggregation from the first principles utilizing extended tight-binding (XTB) and Zerner's intermediate neglect of differential overlap (ZINDO) Hamiltonians. The developed sampling technique for aggregate configurational space scanning was found to be sufficient to both reproduce peculiarities and justify experimental data on the spectroscopic behavior of chromophore aggregates. The sTDA, sTD-DFT (GFN2-XTB) and CIS (ZINDO) approaches were assessed, and then sources of errors and benefits were outlined. Importantly, our goal was to keep any of the mentioned calculations within a computational cost feasible for a single workstation, whereas scaling was possible at any point in time. Finally, several aggregate structures were investigated in the external field to try to achieve distributions similar to the ones observed in the electrostatic potential of the air-water interface to assess the borderlines of practical applicability of the suggested scheme.
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Kostjukov V. Acriflavine in aqueous solution: excitation and hydration. J Mol Model 2022; 28:194. [PMID: 35723744 DOI: 10.1007/s00894-022-05182-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2022] [Accepted: 06/03/2022] [Indexed: 10/18/2022]
Abstract
Using TD-DFT/DFT, the ground and excited states of the acriflavine dye were studied in an aqueous medium. The mutual influence of photoexcitation and strong hydrogen bonds with the solvent was studied by comparing the purely implicit and combined modeling of the aqueous environment of the dye. The excitation of acriflavine was calculated considering the vibronic coupling. The effect of photoexcitation on dye vibrations was analyzed. The spatial structure of the acriflavine H-dimer was obtained and its absorption was estimated.
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Affiliation(s)
- Victor Kostjukov
- Physics Department, Sevastopol State University, Universitetskaya St., 33, Sevastopol, 299053, Crimea.
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Peng X, Chen J, Xu R, Feng J, Zhou T. Achieving Rewritable Fluorescent Patterning on Dye-Doped Polymers Using Programmable Laser Direct Writing. Ind Eng Chem Res 2022. [DOI: 10.1021/acs.iecr.2c00394] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Xiaoyan Peng
- State Key Laboratory of Polymer Materials Engineering of China, Polymer Research Institute, Sichuan University, Chengdu 610065, China
| | - Jiajun Chen
- State Key Laboratory of Polymer Materials Engineering of China, Polymer Research Institute, Sichuan University, Chengdu 610065, China
| | - Rui Xu
- State Key Laboratory of Polymer Materials Engineering of China, Polymer Research Institute, Sichuan University, Chengdu 610065, China
| | - Jin Feng
- State Key Laboratory of Polymer Materials Engineering of China, Polymer Research Institute, Sichuan University, Chengdu 610065, China
| | - Tao Zhou
- State Key Laboratory of Polymer Materials Engineering of China, Polymer Research Institute, Sichuan University, Chengdu 610065, China
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