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Kjellgren ER, Reinholdt P, Ziems KM, Sauer SPA, Coriani S, Kongsted J. Divergences in classical and quantum linear response and equation of motion formulations. J Chem Phys 2024; 161:124112. [PMID: 39319646 DOI: 10.1063/5.0225409] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2024] [Accepted: 09/10/2024] [Indexed: 09/26/2024] Open
Abstract
Calculating molecular properties using quantum devices can be performed through the quantum linear response (qLR) or, equivalently, the quantum equation of motion (qEOM) formulations. Different parameterizations of qLR and qEOM are available, namely naïve, projected, self-consistent, and state-transfer. In the naïve and projected parameterizations, the metric is not the identity, and we show that it depends on redundant orbital rotations. This dependency may lead to divergences in the excitation energies for certain choices of the redundant orbital rotation parameters in an idealized noiseless setting. Furthermore, this leads to a significant variance when calculations include statistical noise from finite quantum sampling.
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Affiliation(s)
- Erik Rosendahl Kjellgren
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense, Denmark
| | - Peter Reinholdt
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense, Denmark
| | - Karl Michael Ziems
- DTU Chemistry, Department of Chemistry, Technical University of Denmark, Kemitorvet Building 207, DK-2800 Kongens Lyngby, Denmark
| | - Stephan P A Sauer
- Department of Chemistry, University of Copenhagen, DK-2100 Copenhagen Ø, Denmark
| | - Sonia Coriani
- DTU Chemistry, Department of Chemistry, Technical University of Denmark, Kemitorvet Building 207, DK-2800 Kongens Lyngby, Denmark
| | - Jacob Kongsted
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, 5230 Odense, Denmark
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2
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Li W, Yin Z, Li X, Ma D, Yi S, Zhang Z, Zou C, Bu K, Dai M, Yue J, Chen Y, Zhang X, Zhang S. A hybrid quantum computing pipeline for real world drug discovery. Sci Rep 2024; 14:16942. [PMID: 39043787 PMCID: PMC11266395 DOI: 10.1038/s41598-024-67897-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2024] [Accepted: 07/17/2024] [Indexed: 07/25/2024] Open
Abstract
Quantum computing, with its superior computational capabilities compared to classical approaches, holds the potential to revolutionize numerous scientific domains, including pharmaceuticals. However, the application of quantum computing for drug discovery has primarily been limited to proof-of-concept studies, which often fail to capture the intricacies of real-world drug development challenges. In this study, we diverge from conventional investigations by developing a hybrid quantum computing pipeline tailored to address genuine drug design problems. Our approach underscores the application of quantum computation in drug discovery and propels it towards more scalable system. We specifically construct our versatile quantum computing pipeline to address two critical tasks in drug discovery: the precise determination of Gibbs free energy profiles for prodrug activation involving covalent bond cleavage, and the accurate simulation of covalent bond interactions. This work serves as a pioneering effort in benchmarking quantum computing against veritable scenarios encountered in drug design, especially the covalent bonding issue present in both of the case studies, thereby transitioning from theoretical models to tangible applications. Our results demonstrate the potential of a quantum computing pipeline for integration into real world drug design workflows.
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Affiliation(s)
- Weitang Li
- Tencent Quantum Lab, Shenzhen, 518057, China
| | - Zhi Yin
- AceMapAI Biotechnology, Suzhou, 215000, China.
- School of Science, Ningbo University of Technology, Ningbo, 315211, China.
| | - Xiaoran Li
- AceMapAI Biotechnology, Suzhou, 215000, China
| | | | - Shuang Yi
- AceMapAI Biotechnology, Suzhou, 215000, China
| | | | - Chenji Zou
- Tencent Quantum Lab, Shenzhen, 518057, China
| | - Kunliang Bu
- Tencent Quantum Lab, Shenzhen, 518057, China
| | - Maochun Dai
- Tencent Quantum Lab, Shenzhen, 518057, China
| | - Jie Yue
- Tencent Quantum Lab, Shenzhen, 518057, China
| | - Yuzong Chen
- AceMapAI Joint Lab, China Pharmaceutical University, Nanjing, 211198, China
| | - Xiaojin Zhang
- AceMapAI Joint Lab, China Pharmaceutical University, Nanjing, 211198, China.
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3
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Liu J, Ma H, Shang H, Li Z, Yang J. Quantum-centric high performance computing for quantum chemistry. Phys Chem Chem Phys 2024; 26:15831-15843. [PMID: 38787657 DOI: 10.1039/d4cp00436a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/26/2024]
Abstract
High performance computing (HPC) is renowned for its capacity to tackle complex problems. Meanwhile, quantum computing (QC) provides a potential way to accurately and efficiently solve quantum chemistry problems. The emerging field of quantum-centric high performance computing (QCHPC), which merges these two powerful technologies, is anticipated to enhance computational capabilities for solving challenging problems in quantum chemistry. The implementation of QCHPC for quantum chemistry requires interdisciplinary research and collaboration across multiple fields, including quantum chemistry, quantum physics, computer science and so on. This perspective provides an introduction to the quantum algorithms that are suitable for deployment in QCHPC, focusing on conceptual insights rather than technical details. Parallel strategies to implement these algorithms on quantum-centric supercomputers are discussed. We also summarize high performance quantum emulating simulators, which are considered a viable tool to explore QCHPC. We conclude with challenges and outlooks in this field.
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Affiliation(s)
- Jie Liu
- Hefei National Laboratory, University of Science and Technology of China, Hefei 230088, China.
| | - Huan Ma
- Hefei National Laboratory, University of Science and Technology of China, Hefei 230088, China.
| | - Honghui Shang
- Key Laboratory of Precision and Intelligent Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, China.
| | - Zhenyu Li
- Hefei National Laboratory, University of Science and Technology of China, Hefei 230088, China.
- Key Laboratory of Precision and Intelligent Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, China.
| | - Jinlong Yang
- Hefei National Laboratory, University of Science and Technology of China, Hefei 230088, China.
- Key Laboratory of Precision and Intelligent Chemistry, University of Science and Technology of China, Hefei, Anhui 230026, China.
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4
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Sun J, Cheng L, Li W. Toward Chemical Accuracy with Shallow Quantum Circuits: A Clifford-Based Hamiltonian Engineering Approach. J Chem Theory Comput 2024; 20:695-707. [PMID: 38169365 DOI: 10.1021/acs.jctc.3c00886] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
Achieving chemical accuracy with shallow quantum circuits is a significant challenge in quantum computational chemistry, particularly for near-term quantum devices. In this work, we present a Clifford-based Hamiltonian engineering algorithm, namely CHEM, that addresses the trade-off between circuit depth and accuracy. Based on a variational quantum eigensolver and hardware-efficient ansatz, our method designs the Clifford-based Hamiltonian transformation that (1) ensures a set of initial circuit parameters corresponding to the Hartree-Fock energy can be generated, (2) effectively maximizes the initial energy gradient with respect to circuit parameters, (3) imposes negligible overhead for classical processing and does not require additional quantum resources, and (4) is compatible with any circuit topology. We demonstrate the efficacy of our approach using a quantum hardware emulator, achieving chemical accuracy for systems as large as 12 qubits with fewer than 30 two-qubit gates. Our Clifford-based Hamiltonian engineering approach offers a promising avenue for practical quantum computational chemistry on near-term quantum devices.
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Affiliation(s)
- Jiace Sun
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Lixue Cheng
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California 91125, United States
| | - Weitang Li
- Tencent Quantum Lab, Shenzhen 518057, China
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5
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Kumar A, Asthana A, Abraham V, Crawford TD, Mayhall NJ, Zhang Y, Cincio L, Tretiak S, Dub PA. Quantum Simulation of Molecular Response Properties in the NISQ Era. J Chem Theory Comput 2023; 19:9136-9150. [PMID: 38054645 DOI: 10.1021/acs.jctc.3c00731] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/07/2023]
Abstract
Accurate modeling of the response of molecular systems to an external electromagnetic field is challenging on classical computers, especially in the regime of strong electronic correlation. In this article, we develop a quantum linear response (qLR) theory to calculate molecular response properties on near-term quantum computers. Inspired by the recently developed variants of the quantum counterpart of equation of motion (qEOM) theory, the qLR formalism employs "killer condition" satisfying excitation operator manifolds that offer a number of theoretical advantages along with reduced quantum resource requirements. We also used the qEOM framework in this work to calculate the state-specific response properties. Further, through noiseless quantum simulations, we show that response properties calculated using the qLR approach are more accurate than the ones obtained from the classical coupled-cluster-based linear response models due to the improved quality of the ground-state wave function obtained using the ADAPT-VQE algorithm.
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Affiliation(s)
- Ashutosh Kumar
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Ayush Asthana
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Vibin Abraham
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109, United States
| | - T Daniel Crawford
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Nicholas J Mayhall
- Department of Chemistry, Virginia Tech, Blacksburg, Virginia 24061, United States
| | - Yu Zhang
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Lukasz Cincio
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Sergei Tretiak
- Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
- Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Pavel A Dub
- Chemistry Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
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Zeng X, Fan Y, Liu J, Li Z, Yang J. Quantum Neural Network Inspired Hardware Adaptable Ansatz for Efficient Quantum Simulation of Chemical Systems. J Chem Theory Comput 2023. [PMID: 38044845 DOI: 10.1021/acs.jctc.3c00527] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/05/2023]
Abstract
The variational quantum eigensolver is a promising way to solve the Schrödinger equation on a noisy intermediate-scale quantum (NISQ) computer, while its success relies on a well-designed wave function ansatz. Inspired by the quantum neural network, we propose a new hardware heuristic ansatz where its expressibility can be improved by increasing either the depth or the width of the circuit. Such a character makes this ansatz adaptable to different hardware environments. More importantly, it provides a general framework to improve the efficiency of the quantum resource utilization. For example, on a superconducting quantum computer where circuit depth is usually the bottleneck and the qubits thus cannot be fully used, circuit depth can be significantly reduced by introducing ancilla qubits. Ancilla qubits also make the circuit less sensitive to noises in practical application. These results open a new avenue to develop practical applications of quantum computation in the NISQ era.
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Affiliation(s)
- Xiongzhi Zeng
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei 230026, China
| | - Yi Fan
- Key Laboratory of Precision and Intelligent Chemistry, University of Science and Technology of China, Hefei 230026, China
| | - Jie Liu
- Hefei National Laboratory, University of Science and Technology of China, Hefei 230088, China
| | - Zhenyu Li
- Key Laboratory of Precision and Intelligent Chemistry, University of Science and Technology of China, Hefei 230026, China
- Hefei National Laboratory, University of Science and Technology of China, Hefei 230088, China
| | - Jinlong Yang
- Key Laboratory of Precision and Intelligent Chemistry, University of Science and Technology of China, Hefei 230026, China
- Hefei National Laboratory, University of Science and Technology of China, Hefei 230088, China
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7
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Fan Y, Liu J, Li Z, Yang J. Quantum Circuit Matrix Product State Ansatz for Large-Scale Simulations of Molecules. J Chem Theory Comput 2023; 19:5407-5417. [PMID: 37503552 DOI: 10.1021/acs.jctc.3c00068] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/29/2023]
Abstract
As demonstrated in the density matrix renormalization group (DMRG) method, approximating many-body wave function of electrons using a matrix product state (MPS) is a promising way to solve electronic structure problems. The expressibility of an MPS is determined by the size of the matrices or, in other words, the bond dimension, which unfortunately may be required to be very large in quantum chemistry simulations. In this study, we propose to calculate the ground state energies of molecular systems by variationally optimizing quantum circuit MPS (QCMPS) with a relatively small number of qubits. It is demonstrated that with carefully chosen circuit structure and orbital localization scheme, QCMPS can reach a similar accuracy as that achieved in DMRG with an exponentially large bond dimension. QCMPS simulation of a linear hydrogen molecular chain with 50 orbitals can reach the chemical accuracy using only 6 qubits at a moderate circuit depth. These results suggest that QCMPS is a promising wave function ansatz in the variational quantum eigensolver algorithm for molecular systems.
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Affiliation(s)
- Yi Fan
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Jie Liu
- Hefei National Laboratory, University of Science and Technology of China, Hefei, Anhui 230088, China
| | - Zhenyu Li
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China
- Hefei National Laboratory, University of Science and Technology of China, Hefei, Anhui 230088, China
| | - Jinlong Yang
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China, Hefei, Anhui 230026, China
- Hefei National Laboratory, University of Science and Technology of China, Hefei, Anhui 230088, China
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8
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Li W, Allcock J, Cheng L, Zhang SX, Chen YQ, Mailoa JP, Shuai Z, Zhang S. TenCirChem: An Efficient Quantum Computational Chemistry Package for the NISQ Era. J Chem Theory Comput 2023. [PMID: 37317520 DOI: 10.1021/acs.jctc.3c00319] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
TenCirChem is an open-source Python library for simulating variational quantum algorithms for quantum computational chemistry. TenCirChem shows high-performance in the simulation of unitary coupled-cluster circuits, using compact representations of quantum states and excitation operators. Additionally, TenCirChem supports noisy circuit simulation and provides algorithms for variational quantum dynamics. TenCirChem's capabilities are demonstrated through various examples, such as the calculation of the potential energy curve of H2O with a 6-31G(d) basis set using a 34-qubit quantum circuit, the examination of the impact of quantum gate errors on the variational energy of the H2 molecule, and the exploration of the Marcus inverted region for charge transfer rate based on variational quantum dynamics. Furthermore, TenCirChem is capable of running real quantum hardware experiments, making it a versatile tool for both simulation and experimentation in the field of quantum computational chemistry.
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Affiliation(s)
- Weitang Li
- Tencent Quantum Lab, Shenzhen 518057, China
| | | | | | | | | | | | - Zhigang Shuai
- Department of Chemistry, Tsinghua University, Beijing, 100084, China
- School of Science and Engineering, The Chinese University of Hong Kong, Shenzhen 518172, China
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Ma H, Liu J, Shang H, Fan Y, Li Z, Yang J. Multiscale quantum algorithms for quantum chemistry. Chem Sci 2023; 14:3190-3205. [PMID: 36970085 PMCID: PMC10034224 DOI: 10.1039/d2sc06875c] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Accepted: 02/15/2023] [Indexed: 02/18/2023] Open
Abstract
Exploring the potential applications of quantum computers in material design and drug discovery is attracting more and more attention after quantum advantage has been demonstrated using Gaussian boson sampling. However, quantum resource requirements in material and (bio)molecular simulations are far beyond the capacity of near-term quantum devices. In this work, multiscale quantum computing is proposed for quantum simulations of complex systems by integrating multiple computational methods at different scales of resolution. In this framework, most computational methods can be implemented in an efficient way on classical computers, leaving the critical portion of the computation to quantum computers. The simulation scale of quantum computing strongly depends on available quantum resources. As a near-term scheme, we integrate adaptive variational quantum eigensolver algorithms, second-order Møller-Plesset perturbation theory and Hartree-Fock theory within the framework of the many-body expansion fragmentation approach. This new algorithm is applied to model systems consisting of hundreds of orbitals with decent accuracy on the classical simulator. This work should encourage further studies on quantum computing for solving practical material and biochemistry problems.
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Affiliation(s)
- Huan Ma
- Hefei National Laboratory, University of Science and Technology of China Hefei 230088 China
| | - Jie Liu
- Hefei National Laboratory, University of Science and Technology of China Hefei 230088 China
| | - Honghui Shang
- State Key Laboratory of Computer Architecture, Institute of Computing Technology, Chinese Academy of Sciences Beijing 100190 China
| | - Yi Fan
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China Hefei 230026 China
| | - Zhenyu Li
- Hefei National Laboratory, University of Science and Technology of China Hefei 230088 China
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China Hefei 230026 China
| | - Jinlong Yang
- Hefei National Laboratory, University of Science and Technology of China Hefei 230088 China
- Hefei National Research Center for Physical Sciences at the Microscale, University of Science and Technology of China Hefei 230026 China
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