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Omoregie AI, Ong DEL, Alhassan M, Basri HF, Muda K, Ojuri OO, Ouahbi T. Two decades of research trends in microbial-induced carbonate precipitation for heavy metal removal: a bibliometric review and literature review. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:52658-52687. [PMID: 39180660 DOI: 10.1007/s11356-024-34722-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Accepted: 08/12/2024] [Indexed: 08/26/2024]
Abstract
Amidst the increasing significance of innovative solutions for bioremediation of heavy metal removal, this paper offers a thorough bibliometric analysis of microbial-induced carbonate precipitation (MICP) for heavy metal removal, as a promising technology to tackle this urgent environmental issue. This study focused on articles published from 1999 to 2022 in the Scopus database. It assesses trends, participation, and key players within the MICP for heavy metal sequestration. Among the 930 identified articles, 74 countries participated in the field, with China being the most productive. Varenyam Achal, the Chinese Academy of Sciences, and Chemosphere are leaders in the research landscape. Using VOSviewer and R-Studio, keyword hotspots like "MICP", "urease", and "heavy metals" underscore the interdisciplinary nature of MICP research and its focus on addressing a wide array of environmental and soil-related challenges. VOSviewer emphasises essential terms like "calcium carbonate crystal", while R-Studio highlights ongoing themes such as "soil" and "organic" aspects. These analyses further showcase the interdisciplinary nature of MICP research, addressing a wide range of environmental challenges and indicating evolving trends in the field. This review also discusses the literature concerning the potential of MICP to immobilise contaminants, the evolution of the research outcome in the last two decades, MICP treatment techniques for heavy metal removal, and critical challenges when scaling from laboratory to field. Readers will find this analysis beneficial in gaining valuable insights into the evolving field and providing a solid foundation for future research and practical implementation.
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Affiliation(s)
- Armstrong Ighodalo Omoregie
- Centre for Borneo Regionalism and Conservation, School of Built Environment, University of Technology Sarawak, No. 1 Jalan University, 96000, Sibu, Sarawak, Malaysia
| | - Dominic Ek Leong Ong
- School of Engineering and Built Environment, Griffith University, 170 Kessels Rd Nathan, South East Queensland, QLD, 4111, Australia
| | - Mansur Alhassan
- Department of Chemical Engineering, Faculty of Chemical and Energy Engineering, Universiti Teknologi Malaysia, 81310, Skudai, Johor, Malaysia
| | - Hazlami Fikri Basri
- Department of Water and Environmental Engineering, Faculty of Civil Engineering, Universiti Teknologi Malaysia, 81310, Skudai, Johor, Malaysia.
| | - Khalida Muda
- Department of Water and Environmental Engineering, Faculty of Civil Engineering, Universiti Teknologi Malaysia, 81310, Skudai, Johor, Malaysia
| | - Oluwapelumi Olumide Ojuri
- Built Environment and Sustainable Technologies (BEST), Research Institute, Liverpool John Moores University, Liverpool, L3 3AF, UK
| | - Tariq Ouahbi
- LOMC, UMR 6294 CNRS, Université Le Havre Normandie, Normandie Université, 53 Rue de Prony, 76058, Le Havre Cedex, France
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Jiang Y, Gao X, Yang X, Gong P, Pan Z, Yi L, Ma S, Li C, Kong S, Wang Y. Sulfate-reducing bacteria (SRB) mediated carbonate dissolution and arsenic release: Behavior and mechanisms. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 929:172572. [PMID: 38641113 DOI: 10.1016/j.scitotenv.2024.172572] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/11/2024] [Revised: 03/24/2024] [Accepted: 04/16/2024] [Indexed: 04/21/2024]
Abstract
Carbonate bound arsenic act as an important reservoir for arsenic (As) in nature aquifers. Sulfate-reducing bacteria (SRB), one of the dominant bacterial species in reductive groundwater, profoundly affects the biogeochemical cycling of As. However, whether and how SRB act on the migration and transformation of carbonate bound arsenic remains to be elucidated. Batch culture experiment was employed using filed collected arsenic bearing calcite to investigate the release and species transformation of As by SRB. We found that arsenic in the carbonate samples mostly exist as inorganic As(V) (93.92 %) and As(III). The present of SRB significantly facilitated arsenic release from carbonates with a maximum of 22.3 μg/L. The main release mechanisms of As by SRB include 1) calcite dissolution and the liberate of arsenic in calcite lattices, and 2) the break of H-bonds frees arsenic absorbed on carbonate surface. A redistribution of arsenic during culture incubation took place which may due to the precipitation of As2Sx or secondary FeAl minerals. To our best knowledge, it is the first experimental study focusing on the release of carbonate bound arsenic by SRB. This study provides new insights into the fate and transport of arsenic mediated by microorganism within high arsenic groundwater-sediment system.
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Affiliation(s)
- Yu Jiang
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China
| | - Xubo Gao
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China; Institute of Karst Geology, Chinese Academy of Geological Sciences, 50 Qixing Road, Guilin, Guangxi 541004, China.
| | - Xinwen Yang
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China
| | - Peili Gong
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China
| | - Zhendong Pan
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China
| | - Ling Yi
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China
| | - Siyuan Ma
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China
| | - Chengcheng Li
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China
| | - Shuqiong Kong
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China
| | - Yanxin Wang
- State Key Laboratory of Biogeology and Environmental Geology and School of Environmental Studies, China University of Geosciences, 430074 Wuhan, Hubei, China
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Yang J, Jiang L, Guo Z, Sarkodie EK, Li K, Shi J, Peng Y, Liu H, Liu X. The Cd immobilization mechanisms in paddy soil through ureolysis-based microbial induced carbonate precipitation: Emphasis on the coexisting cations and metatranscriptome analysis. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133174. [PMID: 38086299 DOI: 10.1016/j.jhazmat.2023.133174] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2023] [Revised: 11/30/2023] [Accepted: 12/01/2023] [Indexed: 02/08/2024]
Abstract
Microbial induced carbonate precipitation (MICP) can immobilize metals and reduce their bioavailability. However, little is known about the immobilization mechanism of Cd in the presence of soil cations and the triggered gene expression and metabolic pathways in paddy soil. Thus, microcosmic experiments were conducted to study the fractionation transformation of Cd and metatranscriptome analysis. Results showed that bioavailable Cd decreased from 0.62 to 0.29 mg/kg after 330 d due to the MICP immobilization. This was ascribed to the increase in carbonate bound, Fe-Mn oxides bound, and residual Cd. The underlying immobilization mechanisms could be attributed to the formation of insoluble Cd-containing precipitates, the complexation and lattice substitution with carbonate and Fe, Mn and Al (hydr)oxides, and the adsorption on functional group on extracellular polymers of cell. During the MICP immobilization process, up-regulated differential expression urease genes were significantly enriched in the paddy soil, corresponding to the arginine biosynthesis, purine metabolism and atrazine degradation. The metabolic pathway of bacterial chemotaxis, flagellum assembly, and peptidoglycan biosynthesis and the expression of cadA gene related to Cd excretion enhanced Cd resistance of soil microbiome. Therefore, this study provided new insights into the immobilization mechanisms of Cd in paddy soils through ureolysis-based MICP process.
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Affiliation(s)
- Jiejie Yang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Luhua Jiang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China.
| | - Ziwen Guo
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Emmanuel Konadu Sarkodie
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Kewei Li
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Jiaxin Shi
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Yulong Peng
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Hongwei Liu
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Xueduan Liu
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
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Jin B, Wang S, Lei Y, Jia H, Niu Q, Dapaah MF, Gao Y, Cheng L. Green and effective remediation of heavy metals contaminated water using CaCO 3 vaterite synthesized through biomineralization. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 353:120136. [PMID: 38271884 DOI: 10.1016/j.jenvman.2024.120136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/05/2023] [Revised: 01/16/2024] [Accepted: 01/17/2024] [Indexed: 01/27/2024]
Abstract
Heavy metal pollution has attracted significant attention due to its persistent presence in aquatic environments. A novel vaterite-based calcium carbonate adsorbent, named biogenic CaCO3, was synthesized utilizing a microbially induced carbonate precipitation (MICP) method to remediate heavy metal-contaminated water. The maximum Cd2+ removal capacity of biogenic CaCO3 was 1074.04 mg Cd2+/g CaCO3 with a high Cd2+ removal efficiency greater than 90% (initial Cd2+ concentration 400 mg/L). Furthermore, the biogenic CaCO₃ vaterite, induced by microbial-induced calcium carbonate precipitation (MICP) process, demonstrated a prolonged phase transformation to calcite and enhanced stability. This resulted in a sustained high effectiveness (greater than 96%) following six consecutive recycling tests. Additionally, X-ray diffraction (XRD) and scanning electron microscopy (SEM) analyses revealed that the semi-stable vaterite type of biogenic CaCO3 spontaneously underwent dissolution and recrystallization to form thermodynamic stable calcite in aquatic environments. However, the presence of Cd2+ leads to the transformation of vaterite into CdCO3 rather than undergoing direct converting to calcite. This transformation is attributed to the relatively low solubility of CdCO3 compared to calcite. Meanwhile, the biogenic CaCO3 proved to be an efficient and viable method for the removal of Pb2+, Cu2+, Zn2+, Co2+, Ni2+ and Mn2+ from water samples, surpassing the performance of previously reported adsorbents. Overall, the efficient and promising adsorbent demonstrates potential for practical in situ remediation of heavy metals-contaminated water.
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Affiliation(s)
- Bingbing Jin
- School of the Environment and Safety Engineering, School of Emergency Management, Jiangsu University, Zhenjiang 212013, China
| | - Sheng Wang
- School of the Environment and Safety Engineering, School of Emergency Management, Jiangsu University, Zhenjiang 212013, China
| | - Yuze Lei
- School of the Environment and Safety Engineering, School of Emergency Management, Jiangsu University, Zhenjiang 212013, China
| | - Hui Jia
- School of the Environment and Safety Engineering, School of Emergency Management, Jiangsu University, Zhenjiang 212013, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, China.
| | - Qijian Niu
- School of Agricultural Engineering, Jiangsu University, Zhenjiang 212013, China
| | - Malcom Frimpong Dapaah
- School of the Environment and Safety Engineering, School of Emergency Management, Jiangsu University, Zhenjiang 212013, China
| | - Yan Gao
- Agricultural Resources and Environment, Jiangsu Academy of Agricultural Sciences, Nanjing, 210014, China
| | - Liang Cheng
- School of the Environment and Safety Engineering, School of Emergency Management, Jiangsu University, Zhenjiang 212013, China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215009, China.
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Svenskaya Y, Pallaeva T. Exploiting Benefits of Vaterite Metastability to Design Degradable Systems for Biomedical Applications. Pharmaceutics 2023; 15:2574. [PMID: 38004553 PMCID: PMC10674703 DOI: 10.3390/pharmaceutics15112574] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2023] [Revised: 10/03/2023] [Accepted: 10/12/2023] [Indexed: 11/26/2023] Open
Abstract
The widespread application of calcium carbonate is determined by its high availability in nature and simplicity of synthesis in laboratory conditions. Moreover, calcium carbonate possesses highly attractive physicochemical properties that make it suitable for a wide range of biomedical applications. This review provides a conclusive analysis of the results on using the tunable vaterite metastability in the development of biodegradable drug delivery systems and therapeutic vehicles with a controlled and sustained release of the incorporated cargo. This manuscript highlights the nuances of vaterite recrystallization to non-porous calcite, dissolution at acidic pH, biodegradation at in vivo conditions and control over these processes. This review outlines the main benefits of vaterite instability for the controlled liberation of the encapsulated molecules for the development of biodegradable natural and synthetic polymeric materials for biomedical purposes.
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Affiliation(s)
- Yulia Svenskaya
- Scientific Medical Center, Saratov State University, 410012 Saratov, Russia
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Liu R, Zhang J, Fu H, Yin L, Song Y, He G. A comparative study of methylene blue adsorption and removal mechanisms by calcium carbonate from different sources. BIORESOURCE TECHNOLOGY 2023; 387:129603. [PMID: 37544533 DOI: 10.1016/j.biortech.2023.129603] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2023] [Revised: 07/26/2023] [Accepted: 07/31/2023] [Indexed: 08/08/2023]
Abstract
Efficient removal of organic dye pollution from contaminated water is a concern in the absorbent applications. In this study, a green biogenic calcium carbonate (BCC) absorbent was fabricated using Bacillus licheniformis for the removal of methylene blue (MB) from water. This was found to have superior adsorption capacity compared with abiotic calcium carbonate (ACC) and operate within a broad pH range from 3 to 9. MB adsorption on BCC was physical and exothermic. The hydrophobic features, rough nanoporous microstructure, and organic-inorganic mesoporous structure of the BCC may all be responsible for its favorable adsorption mass transfer. The adsorption energy of BCC had a more negative value than that of ACC, indicating a stronger MB interaction with BCC with a lower energy barrier. Hydrogen bonding and electrostatic attraction were involved in the adsorption process. Overall, the findings established a theoretical foundation for the application of BCC in remediation of MB-contaminated water.
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Affiliation(s)
- Renlu Liu
- Key Laboratory of Jiangxi Province for Agricultural Environmental Pollution Prevention and Control in Red Soil Hilly Region, School of Life Sciences, Jinggangshan University, Ji'an 343009, China
| | - Jialiang Zhang
- Key Laboratory of Jiangxi Province for Agricultural Environmental Pollution Prevention and Control in Red Soil Hilly Region, School of Life Sciences, Jinggangshan University, Ji'an 343009, China
| | - Haiyun Fu
- Key Laboratory of Jiangxi Province for Agricultural Environmental Pollution Prevention and Control in Red Soil Hilly Region, School of Life Sciences, Jinggangshan University, Ji'an 343009, China
| | - Li Yin
- Key Laboratory of Jiangxi Province for Agricultural Environmental Pollution Prevention and Control in Red Soil Hilly Region, School of Life Sciences, Jinggangshan University, Ji'an 343009, China
| | - Yongsheng Song
- Key Laboratory of Jiangxi Province for Agricultural Environmental Pollution Prevention and Control in Red Soil Hilly Region, School of Life Sciences, Jinggangshan University, Ji'an 343009, China.
| | - Genhe He
- Key Laboratory of Jiangxi Province for Agricultural Environmental Pollution Prevention and Control in Red Soil Hilly Region, School of Life Sciences, Jinggangshan University, Ji'an 343009, China.
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Debnath A, Hazra C, Sen R. Insight into biomolecular interaction-based non-classical crystallization of bacterial biocement. Appl Microbiol Biotechnol 2023; 107:6683-6701. [PMID: 37668700 DOI: 10.1007/s00253-023-12736-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 08/03/2023] [Accepted: 08/20/2023] [Indexed: 09/06/2023]
Abstract
In an attempt to draw a correlation between calcium carbonate (CaCO3) precipitation and biomacromolecules such as extracellular polymeric substances and enzyme activity in biomineralizing microbe, this report aims to elucidate the ureolytic and ammonification route in Paenibacillus alkaliterrae to explore the possible role of organic biomolecule(s) present on cell surface in mediating nucleation and crystallization of biogenic CaCO3. After 168 h of biomineralization in ureolysis and ammonification, 2.2 g/l and 0.87 g/l of CaCO3 precipitates were obtained, respectively. The highest carbonic anhydrase activity (31.8 µmoles/min/ml) was evidenced in ammonification as opposed to ureolysis (24.8 µmoles/min/ml). Highest urease activity reached up to 9.26 µmoles/min/ml in ureolytic pathway. Extracellular polymeric substances such as polysaccharides and proteins were found to have a vital role not only in the nucleation and crystal growth but also in addition direct polymorphic fate of CaCO3 nanoparticles. EPS production was higher during ammonification (3.1 mg/ml) than in ureolysis (0.72 mg/ml). CaCO3 nanoparticle-associated proteins were found to be 0.82 mg/ml in ureolysis and 0.56 mg/ml in ammonification. After 30 days of biomineralization, all the polymorphic forms stabilized to calcite in ureolysis but in ammonification vaterite predominated. In our study, we showed that organic template-mediated prokaryotic biomineralization follows the non-classical nucleation and varying proportions of these organic components causes selective polymorphism of CaCO3 nanoparticles. Overall, the findings are expected to further the fundamental understanding of enzymes, EPS-driven non-classical nucleation of CaCO3, and we foresee the design of fit-for-purpose futuristic biominerals arising from such renewed understanding of biomineralization. KEY POINTS: • Organic-inorganic interface of cell surface promote crystallization of biominerals • Carbohydrate and proteins in the interface results selective polymorphism of CaCO3 • Calcite stabilized at 30 days in ureolysis, vaterite-calcite mix in ammonification.
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Affiliation(s)
- Ankita Debnath
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India
| | - Chinmay Hazra
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India
| | - Ramkrishna Sen
- Department of Biotechnology, Indian Institute of Technology Kharagpur, Kharagpur, West Bengal, India.
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Dhami NK, Greenwood PF, Poropat SF, Tripp M, Elson A, Vijay H, Brosnan L, Holman AI, Campbell M, Hopper P, Smith L, Jian A, Grice K. Microbially mediated fossil concretions and their characterization by the latest methodologies: a review. Front Microbiol 2023; 14:1225411. [PMID: 37840715 PMCID: PMC10576451 DOI: 10.3389/fmicb.2023.1225411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2023] [Accepted: 08/14/2023] [Indexed: 10/17/2023] Open
Abstract
The study of well-preserved organic matter (OM) within mineral concretions has provided key insights into depositional and environmental conditions in deep time. Concretions of varied compositions, including carbonate, phosphate, and iron-based minerals, have been found to host exceptionally preserved fossils. Organic geochemical characterization of concretion-encapsulated OM promises valuable new information of fossil preservation, paleoenvironments, and even direct taxonomic information to further illuminate the evolutionary dynamics of our planet and its biota. Full exploitation of this largely untapped geochemical archive, however, requires a sophisticated understanding of the prevalence, formation controls and OM sequestration properties of mineral concretions. Past research has led to the proposal of different models of concretion formation and OM preservation. Nevertheless, the formation mechanisms and controls on OM preservation in concretions remain poorly understood. Here we provide a detailed review of the main types of concretions and formation pathways with a focus on the role of microbes and their metabolic activities. In addition, we provide a comprehensive account of organic geochemical, and complimentary inorganic geochemical, morphological, microbial and paleontological, analytical methods, including recent advancements, relevant to the characterization of concretions and sequestered OM. The application and outcome of several early organic geochemical studies of concretion-impregnated OM are included to demonstrate how this underexploited geo-biological record can provide new insights into the Earth's evolutionary record. This paper also attempts to shed light on the current status of this research and major challenges that lie ahead in the further application of geo-paleo-microbial and organic geochemical research of concretions and their host fossils. Recent efforts to bridge the knowledge and communication gaps in this multidisciplinary research area are also discussed, with particular emphasis on research with significance for interpreting the molecular record in extraordinarily preserved fossils.
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Affiliation(s)
- Navdeep K. Dhami
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Paul F. Greenwood
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Stephen F. Poropat
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Madison Tripp
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Amy Elson
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Hridya Vijay
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Luke Brosnan
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Alex I. Holman
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Matthew Campbell
- The Trace and Environmental DNA lab (trEND), School of Molecular and Life Sciences, Curtin University, Perth, WA, Australia
| | - Peter Hopper
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Lisa Smith
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Andrew Jian
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
| | - Kliti Grice
- Western Australian – Organic and Isotope Geochemistry Centre (WA-OIGC), School of Earth and Planetary Sciences, The Institute for Geoscience Research, Curtin University, Perth, WA, Australia
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Mahadevan G, Brahma RK, Kini RM, Valiyaveettil S. Purification of Intramineral Peptides from Cuttlebones and In Vitro Activity in CaCO 3 Biomineralization. LANGMUIR : THE ACS JOURNAL OF SURFACES AND COLLOIDS 2023; 39:7249-7257. [PMID: 37201193 DOI: 10.1021/acs.langmuir.2c03433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Living organisms develop functional hard structures such as teeth, bones, and shells from calcium salts through mineralization for managing vital functions to sustain life. However, the exact mechanism or role of biomolecules such as proteins and peptides in the biomineralization process to form defect-free hierarchical structures in nature is poorly understood. In this study, we have extracted, purified, and characterized five major peptides (CBP1-CBP5) from the soluble organic materials (SOMs) of cuttlefish bone (CB) and used for the in vitro mineralization of calcium carbonate crystals. The SOMs induced nucleation of the calcite phase at low concentrations and the vaterite phase at high concentrations. The purified peptides nucleated calcite crystals and enhanced aggregation under laboratory conditions. Among five peptides, only CBP2 and CBP3 showed concentration-dependent nucleation, aggregation, and morphological changes of the calcite crystals within 12 h. Circular dichroism studies showed that the peptides CBP2 and CBP3 are in alpha helix and β-sheet conformation, respectively, in solution. CBP1 and CBP4 and CBP5 are in random coil and β-sheet conformation, respectively. In addition, the peptides showed different sizes in solution in the absence (∼27 nm, low aggregation) and presence (∼118 nm, high aggregation) of calcium ions. Aragonite crystals with needle-type morphologies were nucleated in the presence of Mg2+ ions in solution. Overall, exploring the activities of such intramineral peptides from CB help to unravel the mechanism of calcium salt deposition in nature.
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Affiliation(s)
- Gomathi Mahadevan
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
| | - Rajeev Kungur Brahma
- Department of Biological Sciences, 14 science drive 4, National University of Singapore, Singapore 117543, Singapore
| | - R Manjunatha Kini
- Department of Biological Sciences, 14 science drive 4, National University of Singapore, Singapore 117543, Singapore
- Department of Pharmacology, Yong Loo Lin School of Medicine, National University of Singapore, 16 Medical Drive, Singapore 117600, Singapore
| | - Suresh Valiyaveettil
- Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
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Yang G, Li F, Zhang W, Guo X, Zhang S. Formation mechanism of disc-shaped calcite-a case study on Arthrobacter sp. MF-2. RSC Adv 2023; 13:7524-7534. [PMID: 36895772 PMCID: PMC9990489 DOI: 10.1039/d2ra07455a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2022] [Accepted: 02/23/2023] [Indexed: 03/09/2023] Open
Abstract
Research on the biogenic-specific morphology of carbonate minerals has made progress in the fields of biomineralization and industrial engineering. In this study, mineralization experiments were performed using Arthrobacter sp. MF-2, including its biofilms. The results showed that a particular morphology of minerals (i.e., disc-shaped) was observed in the mineralization experiments with strain MF-2. The disc-shaped minerals were formed near the air/solution interface. We also observed that disc-shaped minerals formed in experiments with the biofilms of strain MF-2. Therefore, the nucleation of carbonate particles on the biofilm templates produced a novel disc-shaped morphology which was assembled from calcite nanocrystals radiating out from the periphery of the template biofilms. Further, we propose a possible formation mechanism of the disc-shaped morphology. This study may provide new perspectives on the formation mechanism of carbonate morphogenesis in the process of biomineralization.
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Affiliation(s)
- Guoguo Yang
- School of Geographic Information and Tourism, Chuzhou University Chuzhou 239000 China.,College of Resources and Environmental Sciences, Nanjing Agricultural University Nanjing 210095 China
| | - Fuchun Li
- College of Resources and Environmental Sciences, Nanjing Agricultural University Nanjing 210095 China
| | - Weiqing Zhang
- College of Resources and Environmental Sciences, Nanjing Agricultural University Nanjing 210095 China
| | - Xinyuan Guo
- College of Resources and Environmental Sciences, Nanjing Agricultural University Nanjing 210095 China
| | - Shitong Zhang
- College of Resources and Environmental Sciences, Nanjing Agricultural University Nanjing 210095 China
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11
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Reyes G, Vega-Coloma M, Antonova A, Ajdary R, Jonveaux S, Flanigan C, Lautenbacher N, Rojas OJ. Direct CO 2 Capture by Alkali-Dissolved Cellulose and Sequestration in Building Materials and Artificial Reef Structures. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2209327. [PMID: 36516448 DOI: 10.1002/adma.202209327] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2022] [Revised: 12/07/2022] [Indexed: 06/17/2023]
Abstract
Current carbon capture and utilization (CCU) technologies require high energy input and costly catalysts. Here, an effective pathway is offered that addresses climate action by atmospheric CO2 sequestration. Industrially relevant highly reactive alkali cellulose solutions are used as CO2 absorption media. The latter lead to mineralized cellulose materials (MCM) at a tailorable cellulose-to-mineral ratio, forming organic-inorganic viscous systems (viscosity from 102 to 107 mPa s and storage modulus from 10 to 105 Pa). CO2 absorption and conversion into calcium carbonate and associated minerals translate to maximum absorption of 6.5 gCO2 gcellulose -1 , tracking inversely with cellulose loading. Cellulose lean gels are easily converted into dry powders, shown as a functional component of ceramic glazes and cementitious composites. Meanwhile, cellulose-rich gels are moldable and extrudable, yielding stone-like structures tested as artificial substrates for coral reef restoration. Life Cycle Assessment (LCA) suggests new CCU opportunities for building materials, as demonstrated in underwater deployment for coral reef ecosystem restoration.
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Affiliation(s)
- Guillermo Reyes
- Biobased Colloids and Materials, Department of Bioproducts and Biosystems, School of Chemical Engineering, Aalto University, Espoo, FI-00076, Finland
| | - Mabel Vega-Coloma
- Departamento de Ingeniería en Maderas, Universidad del Bío-Bío, Av. Collao 1202, Casilla 5-C, Concepción, 4081112, Chile
| | - Anna Antonova
- Department of Civil Engineering, Aalto University, Rakentajanaukio 4 A, Otaniemi, Espoo, 02150, Finland
| | - Rubina Ajdary
- Biobased Colloids and Materials, Department of Bioproducts and Biosystems, School of Chemical Engineering, Aalto University, Espoo, FI-00076, Finland
| | - Solène Jonveaux
- Université de Sherbrooke, 2500 Boulevard de l'Université, Sherbrooke, Quebec, J1K 2R1, Canada
| | - Colleen Flanigan
- Zoe - A Living Sea Sculpture in Cozumel, Av. Rafael E. Melgar, San Miguel de Cozumel, Q.R., 77688, Mexico
| | - Nathalie Lautenbacher
- Department of Design, Aalto University, Otaniementie 14, Otaniemi, Espoo, 02150, Finland
| | - Orlando J Rojas
- Biobased Colloids and Materials, Department of Bioproducts and Biosystems, School of Chemical Engineering, Aalto University, Espoo, FI-00076, Finland
- Bioproducts Institute, Department of Chemical & Biological Engineering, Department of Chemistry and Department of Wood Science, The University of British Columbia, 2360 East Mall, Vancouver, BC, V6T 1Z3, Canada
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12
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Matrix is everywhere: extracellular DNA is a link between biofilm and mineralization in Bacillus cereus planktonic lifestyle. NPJ Biofilms Microbiomes 2023; 9:9. [PMID: 36854956 PMCID: PMC9975174 DOI: 10.1038/s41522-023-00377-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2022] [Accepted: 02/02/2023] [Indexed: 03/02/2023] Open
Abstract
To date, the mechanisms of biomineralization induced by bacterial cells in the context of biofilm formation remain the subject of intensive studies. In this study, we analyzed the influence of the medium components on the induction of CaCO3 precipitation by the Bacillus cereus cells and composition of the extracellular matrix (ECM) formed in the submerged culture. While the accumulation of extracellular polysaccharides and amyloids appeared to be independent of the presence of calcium and urea during the growth, the accumulation of extracellular DNA (eDNA), as well as precipitation of calcium carbonate, required the presence of both ingredients in the medium. Removal of eDNA, which was sensitive to treatment by DNase, did not affect other matrix components but resulted in disruption of cell network formation and a sixfold decrease in the precipitate yield. An experiment with a cell-free system confirmed the acceleration of mineral formation after the addition of exogenous salmon sperm DNA. The observed pathway for the formation of CaCO3 minerals in B. cereus planktonic culture included a production of exopolysaccharides and negatively charged eDNA lattice promoting local Ca2+ supersaturation, which, together with an increase in the concentration of carbonate ions due to pH rise, resulted in the formation of an insoluble precipitate of calcium carbonate. Precipitation of amorphous CaCO3 on eDNA matrix was followed by crystal formation via the ACC-vaterite-calcite/aragonite pathway and further formation of larger mineral aggregates in complex with extracellular polymeric substances. Taken together, our data showed that DNA in extracellular matrix is an essential factor for triggering the biomineralization in B. cereus planktonic culture.
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13
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Sahadat Hossain M, Akter Jahan S, Ahmed S. Crystallographic characterization of bio-waste material originated CaCO3, green-synthesized CaO and Ca(OH)2. RESULTS IN CHEMISTRY 2023. [DOI: 10.1016/j.rechem.2023.100822] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023] Open
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14
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A Critical Review on the Feasibility of Synthetic Polymers Inclusion in Enhancing the Geotechnical Behavior of Soils. Polymers (Basel) 2022; 14:polym14225004. [PMID: 36433132 PMCID: PMC9694698 DOI: 10.3390/polym14225004] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Revised: 11/09/2022] [Accepted: 11/15/2022] [Indexed: 11/19/2022] Open
Abstract
Polymers have attracted widespread interest as soil stabilizers and are proposed as an ecologically acceptable means for enhancing the geotechnical properties of soils. They have found profound applications in diverse fields such as the food industry, textile, medicine, agriculture, construction, and many more. Various polymers are proven to increase soil shear strength, improve volume stability, promote water retention, and prevent erosion, at extremely low concentrations within soils through the formation of a polymer membrane around the soil particles upon hydration. The purpose of this work is to provide an overview of existing research on synthetic polymers for soil improvement. A fundamental evaluation of many synthetic polymers used in soil stabilization is provided, Furthermore, the impact of different polymer types on the geotechnical parameters of treated soil was assessed and compared. Limiting factors like polymer durability and the effect of changing climatic conditions on the engineering behavior of the polymer-treated soils have been critically reviewed. The dominant mechanisms responsible for the alteration in the behavior of polymer-soil admixture are reviewed and discussed. This review article will allow practicing engineers to better understand the intrinsic and extrinsic parameters of targeted polymers before employing them in real-field scenarios for better long-term performance.
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15
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Li X, Sun M, Zhang L, Finlay RD, Liu R, Lian B. Widespread bacterial responses and their mechanism of bacterial metallogenic detoxification under high concentrations of heavy metals. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2022; 246:114193. [PMID: 36270034 DOI: 10.1016/j.ecoenv.2022.114193] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/11/2022] [Revised: 10/06/2022] [Accepted: 10/13/2022] [Indexed: 06/16/2023]
Abstract
Microbial mineralization is increasingly used in bioremediation of heavy metal pollution, but better mechanistic understanding of the processes involved and how they are regulated are required to improve the practical application of microorganisms in bioremediation. We used a combination of morphological (TEM) and analytical (XRD, XPS, FTIR) methods, together with novel proteomic analyses, to investigate the detoxification mechanisms, used by a range of bacteria, including the strains Bacillus velezensis LB002, Escherichia coli DH5α, B. subtilis 168, Pseudomonas putida KT2440, and B. licheniformis MT-1, exposed to elevated concentrations of Cd2+ and combinations of Cd2+, Pb2+, Cu2+, and Zn2+, in the presence and absence of added CaCl2. Common features of detoxification included biomineralization, including the production of biological vaterite, up-regulation of proteins involved in flagellar movement and chemotaxis, biofilm synthesis, transmembrane transport of small molecules and organic matter decomposition. The putative roles of differentially expressed proteins in detoxification are discussed in relation to chemical and morphological data and together provide important tools to improve screening, selection, and practical application of bacterial isolates in bioremediation of polluted environments.
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Affiliation(s)
- Xiaofang Li
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China.
| | - Menglin Sun
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China.
| | - Luting Zhang
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China.
| | - Roger D Finlay
- Department of Forest Mycology and Plant Pathology, Uppsala BioCenter, Swedish University of Agricultural Sciences, 75007, Uppsala, Sweden.
| | - Renlu Liu
- Jiangsu Key Laboratory for Microbes and Functional Genomics, College of Life Sciences, Nanjing Normal University, Nanjing 210023, China; School of Life Sciences, Key Laboratory of Agricultural Environmental Pollution Prevention and Control in Red Soil Hilly Region of Jiangxi Province, Jinggangshan University, Ji'an 343009, China.
| | - Bin Lian
- College of Marine Science and Engineering, Nanjing Normal University, Nanjing 210023, China.
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16
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Cuéllar-Cruz M, Islas SR, Ramírez-Ramírez N, Pedraza-Reyes M, Moreno A. Protection of the DNA from Selected Species of Five Kingdoms in Nature by Ba(II), Sr(II), and Ca(II) Silica-Carbonates: Implications about Biogenicity and Evolving from Prebiotic Chemistry to Biological Chemistry. ACS OMEGA 2022; 7:37410-37426. [PMID: 36312347 PMCID: PMC9609056 DOI: 10.1021/acsomega.2c04170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/02/2022] [Accepted: 10/05/2022] [Indexed: 06/16/2023]
Abstract
The origin of life on Earth is associated with the Precambrian era, in which the existence of a large diversity of microbial fossils has been demonstrated. Notwithstanding, despite existing evidence of the emergence of life many unsolved questions remain. The first question could be as follows: Which was the inorganic structure that allowed isolation and conservation of the first biomolecules in the existing reduced conditions of the primigenial era? Minerals have been postulated as the ones in charge of protecting theses biomolecules against the external environment. There are calcium, barium, or strontium silica-carbonates, called biomorphs, which we propose as being one of the first inorganic structures in which biomolecules were protected from the external medium. Biomorphs are structures with different biological morphologies that are not formed by cells, but by nanocrystals; some of their morphologies resemble the microfossils found in Precambrian cherts. Even though biomorphs are unknown structures in the geological registry, their similarity with some biological forms, including some Apex fossils, could suggest them as the first "inorganic scaffold" where the first biomolecules became concentrated, conserved, aligned, and duplicated to give rise to the pioneering cell. However, it has not been documented whether biomorphs could have been the primary structures that conserved biomolecules in the Precambrian era. To attain a better understanding on whether biomorphs could have been the inorganic scaffold that existed in the primigenial Earth, the aim of this contribution is to synthesize calcium, barium, and strontium biomorphs in the presence of genomic DNA from organisms of the five kingdoms in conditions emulating the atmosphere of the Precambrian era and that CO2 concentration in conditions emulating current atmospheric conditions. Our results showed, for the first time, the formation of the kerogen signal, which is a marker of biogenicity in fossils, in the biomorphs grown in the presence of DNA. We also found the DNA to be internalized into the structure of biomorphs.
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Affiliation(s)
- Mayra Cuéllar-Cruz
- Departamento
de Biología, División de Ciencias Naturales y Exactas,
Campus Guanajuato, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta,
C.P. 36050, Guanajuato, Mexico
| | - Selene R. Islas
- Instituto
de Ciencias Aplicadas y Tecnología, Universidad Nacional Autónoma de México, Circuito Exterior S/N, Ciudad Universitaria, México City, 04510 Mexico
| | - Norma Ramírez-Ramírez
- Departamento
de Biología, División de Ciencias Naturales y Exactas,
Campus Guanajuato, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta,
C.P. 36050, Guanajuato, Mexico
| | - Mario Pedraza-Reyes
- Departamento
de Biología, División de Ciencias Naturales y Exactas,
Campus Guanajuato, Universidad de Guanajuato, Noria Alta S/N, Col. Noria Alta,
C.P. 36050, Guanajuato, Mexico
| | - Abel Moreno
- Instituto
de Química, Universidad Nacional
Autónoma de México, Av. Universidad 3000, Ciudad Universitaria, México City 04510. Mexico
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17
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Răut I, Constantin M, Petre I, Raduly M, Radu N, Gurban AM, Doni M, Alexandrescu E, Nicolae CA, Jecu L. Highlighting Bacteria with Calcifying Abilities Suitable to Improve Mortar Properties. MATERIALS (BASEL, SWITZERLAND) 2022; 15:7259. [PMID: 36295324 PMCID: PMC9612027 DOI: 10.3390/ma15207259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/17/2022] [Revised: 10/10/2022] [Accepted: 10/14/2022] [Indexed: 06/16/2023]
Abstract
Biomineralization, the use of microorganisms to produce calcium carbonate, became a green solution for application in construction materials to improve their strength and durability. The calcifying abilities of several bacteria were investigated by culturing on a medium with urea and calcium ions. The characterization of the precipitates from bacterial cultures was performed using X-ray diffraction, Fourier transform infrared spectroscopy, and thermogravimetric analysis. The formation of carbonate crystals was demonstrated by optical and scanning electron microscopy. Water absorption and compressive strength measurements were applied to mortars embedded with sporal suspension. The efficiency of the supplementation of mortar mixtures with bacterial cells was evaluated by properties, namely the compressive strength and the water absorption, which are in a relationship of direct dependence, the increase in compressive strength implying the decrease in water absorption. The results showed that Bacillus subtilis was the best-performing bacterium, its introduction into the mortar producing an increase in compressive strength by 11.81% and 9.50%, and a decrease in water absorption by 11.79% and 10.94%, after 28 and 56 days of curing, respectively, as compared to standards. The exploitation of B. subtilis as a calcifying agent can be an interesting prospect in construction materials.
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Affiliation(s)
- Iuliana Răut
- National Institute for Research & Development in Chemistry and Petrochemistry-ICECHIM, 202 Independentei Splai, 060021 Bucharest, Romania
| | - Mariana Constantin
- National Institute for Research & Development in Chemistry and Petrochemistry-ICECHIM, 202 Independentei Splai, 060021 Bucharest, Romania
- Faculty of Pharmacy, Titu Maiorescu University, 16 Bd. Gheorghe Sincai, 040441 Bucharest, Romania
| | - Ionela Petre
- CEPROCIM S.A., 6 Preciziei Street, 062203 Bucharest, Romania
| | - Monica Raduly
- National Institute for Research & Development in Chemistry and Petrochemistry-ICECHIM, 202 Independentei Splai, 060021 Bucharest, Romania
| | - Nicoleta Radu
- National Institute for Research & Development in Chemistry and Petrochemistry-ICECHIM, 202 Independentei Splai, 060021 Bucharest, Romania
- Faculty of Biotechnology, University of Agronomic Sciences and Veterinary Medicine of Bucharest, 59 Mărăşti Boulevard, 011464 Bucharest, Romania
| | - Ana-Maria Gurban
- National Institute for Research & Development in Chemistry and Petrochemistry-ICECHIM, 202 Independentei Splai, 060021 Bucharest, Romania
| | - Mihaela Doni
- National Institute for Research & Development in Chemistry and Petrochemistry-ICECHIM, 202 Independentei Splai, 060021 Bucharest, Romania
| | - Elvira Alexandrescu
- National Institute for Research & Development in Chemistry and Petrochemistry-ICECHIM, 202 Independentei Splai, 060021 Bucharest, Romania
| | - Cristi-Andi Nicolae
- National Institute for Research & Development in Chemistry and Petrochemistry-ICECHIM, 202 Independentei Splai, 060021 Bucharest, Romania
| | - Luiza Jecu
- National Institute for Research & Development in Chemistry and Petrochemistry-ICECHIM, 202 Independentei Splai, 060021 Bucharest, Romania
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18
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Mehta N, Gaëtan J, Giura P, Azaïs T, Benzerara K. Detection of biogenic amorphous calcium carbonate (ACC) formed by bacteria using FTIR spectroscopy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2022; 278:121262. [PMID: 35526437 DOI: 10.1016/j.saa.2022.121262] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2022] [Revised: 03/28/2022] [Accepted: 04/10/2022] [Indexed: 06/14/2023]
Abstract
While the formation of intracellular amorphous calcium carbonate (ACC) by living organisms is widespread, its detection in prokaryotes remains difficult owing to its susceptibility to transform or dissolve upon sample preparation. Because of these challenges, a large number of ACC-forming prokaryotes may have been undetected and their abundance in the natural environment is possibly underestimated. This study identifies diagnostic spectral markers of ACC-forming prokaryotes that facilitate their detection in the environment. Accordingly, ACC formed by cyanobacteria was characterized using Fourier transform infrared (FTIR) spectroscopy in near-IR, mid-IR, and far-IR spectral regions. Two characteristic FTIR vibrations of ACC, at ∼ 860 cm-1and ∼ 306 cm-1, were identified as reliable spectral probes to rapidly detect prokaryotic ACC. Using these spectral probes, several Microcystis strains whose ACC-forming capability was unknown, were tested. Four out of eight Microcystis strains were identified as possessing ACC-forming capability and these findings were confirmed by scanning electron microscopy (SEM) observations. Overall, our findings provide a systematic characterization of prokaryotic ACC that facilitate rapid detection of ACC forming prokaryotes in the environment, a prerequisite to shed light on the role of ACC-forming prokaryotes in the geochemical cycle of Ca in the environment.
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Affiliation(s)
- Neha Mehta
- Sorbonne Université, Muséum National d'Histoire Naturelle, UMR CNRS 7590, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), 4 Place Jussieu, 75005 Paris, France
| | - Juliette Gaëtan
- Sorbonne Université, Muséum National d'Histoire Naturelle, UMR CNRS 7590, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), 4 Place Jussieu, 75005 Paris, France
| | - Paola Giura
- Sorbonne Université, Muséum National d'Histoire Naturelle, UMR CNRS 7590, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), 4 Place Jussieu, 75005 Paris, France
| | - Thierry Azaïs
- Sorbonne Université, CNRS, Laboratoire de Chimie de la Matière Condensée de Paris (LCMCP), 4 Place Jussieu, 75005 Paris, France
| | - Karim Benzerara
- Sorbonne Université, Muséum National d'Histoire Naturelle, UMR CNRS 7590, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), 4 Place Jussieu, 75005 Paris, France
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19
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Han Z, Li D, Zhao Y, Wang J, Guo N, Yan H, Han C, Li Q, Tucker ME. Mineralogy of Bioprecipitate Evolution over Induction Times Mediated by Halophilic Bacteria under Various Mg/Ca Molar Ratios. ACS OMEGA 2022; 7:29755-29772. [PMID: 36061657 PMCID: PMC9435042 DOI: 10.1021/acsomega.2c02443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Accepted: 08/10/2022] [Indexed: 06/15/2023]
Abstract
In microbial mineralization experiments, the induction time of mineral precipitation is ambiguous, and this may lead to difficulties in reproducing and confirming the test results. To explore the link between induction time and microbially mediated carbonate precipitation, we report here the mineralogy and morphology of carbonate precipitates induced by the halophilic Halomonas utahensis WMS2 bacterium in media with various Mg/Ca molar ratios over a range of induction times. The results show that the biominerals are formed in an alkaline environment affected by ammonia secreted by H. utahensis WMS2 bacteria. The content of dissolved inorganic carbon increased as a result of carbonic anhydrase catalyzing the hydration of carbon dioxide to release bicarbonate and carbonate ions. The X-ray diffraction (XRD) results show that the phase of mineral precipitated gradually changes from an unstable Mg-rich calcite to metastable monohydrocalcite and then to stable hydromagnesite with an increase in the Mg2+ ion concentration and induction time. The scanning electron microscopy (SEM), energy-dispersive X-ray spectroscopy (EDS), and Fourier transform infrared spectroscopy (FTIR) results show that minerals mostly change from single particles/crystallites to aggregations under the action of the microorganisms at different Mg2+ ion concentrations and induction times. Our experiments demonstrate that the carbonate minerals produced in the presence of microbes change significantly with the induction time, in addition to the influence of the hydrochemical factors; this indicates that the induction time is significant in determining the mineralogy of biominerals.
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Affiliation(s)
- Zuozhen Han
- College
of Earth Science and Engineering, Shandong Provincial Key Laboratory
of Depositional Mineralization and Sedimentary Minerals, Shandong University of Science and Technology, Qingdao 266590, China
- Laboratory
for Marine Mineral Resources, Qingdao National
Laboratory for Marine Science and Technology, Qingdao 266237, China
| | - Dan Li
- College
of Earth Science and Engineering, Shandong Provincial Key Laboratory
of Depositional Mineralization and Sedimentary Minerals, Shandong University of Science and Technology, Qingdao 266590, China
| | - Yanyang Zhao
- College
of Earth Science and Engineering, Shandong Provincial Key Laboratory
of Depositional Mineralization and Sedimentary Minerals, Shandong University of Science and Technology, Qingdao 266590, China
| | - Jiajia Wang
- College
of Earth Science and Engineering, Shandong Provincial Key Laboratory
of Depositional Mineralization and Sedimentary Minerals, Shandong University of Science and Technology, Qingdao 266590, China
| | - Na Guo
- College
of Earth Science and Engineering, Shandong Provincial Key Laboratory
of Depositional Mineralization and Sedimentary Minerals, Shandong University of Science and Technology, Qingdao 266590, China
| | - Huaxiao Yan
- College
of Chemical and Biological Engineering, Shandong University of Science and Technology, Qingdao 266590, China
| | - Chao Han
- College
of Earth Science and Engineering, Shandong Provincial Key Laboratory
of Depositional Mineralization and Sedimentary Minerals, Shandong University of Science and Technology, Qingdao 266590, China
| | - Qiang Li
- College
of Earth Science and Engineering, Shandong Provincial Key Laboratory
of Depositional Mineralization and Sedimentary Minerals, Shandong University of Science and Technology, Qingdao 266590, China
| | - Maurice E. Tucker
- School
of Earth Sciences, University of Bristol, Bristol BS8 1RJ, U.K.
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20
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Czaplicka N, Konopacka-Łyskawa D, Nowotnik A, Mielewczyk-Gryń A, Łapiński M, Bray R. Precipitation of calcium carbonate in the presence of rhamnolipids in alginate hydrogels as a model of biomineralization. Colloids Surf B Biointerfaces 2022; 218:112749. [PMID: 35932556 DOI: 10.1016/j.colsurfb.2022.112749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2022] [Revised: 07/27/2022] [Accepted: 08/01/2022] [Indexed: 10/16/2022]
Abstract
This paper reports the effects of rhamnolipids presence in the alginate hydrogel and CO32- solution, on the precipitation of CaCO3 in the Ca2+ loaded alginate hydrogel. Characteristics of the formed particles are discussed. Model conditions containing alginate hydrogel and rhamnolipids were used in order to mimic the natural environment of biomineralization in biofilms. It has been shown that rhamnolipids affect the characteristics of precipitated calcium carbonate effect of using these biosurfactants depends on their concentration as well as whether they are directly present in the hydrogel matrix or the carbonate solution surrounding the hydrogel. The greatest effect compared to the control samples was found for the rhamnolipids in the form of micelles directly present in the hydrogel with the CaCl2 cross-linked solution at concentration of 0.05 M. These conditions result in the highest increase in vaterite content, specific surface area, and pore volume. The mechanism of CaCO3 precipitation in alginate hydrogel containing rhamnolipids has been proposed.
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Affiliation(s)
- Natalia Czaplicka
- Department of Process Engineering and Chemical Technology, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland.
| | - Donata Konopacka-Łyskawa
- Department of Process Engineering and Chemical Technology, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Agata Nowotnik
- Department of Process Engineering and Chemical Technology, Faculty of Chemistry, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Aleksandra Mielewczyk-Gryń
- Institute of Nanotechnology and Materials Engineering and Advanced Materials Center, Faculty of Applied Physics and Mathematics, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Marcin Łapiński
- Institute of Nanotechnology and Materials Engineering and Advanced Materials Center, Faculty of Applied Physics and Mathematics, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Rafał Bray
- Department of Water and Wastewater Technology, Faculty of Civil and Environmental Engineering, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
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21
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Zafar B, Campbell J, Cooke J, Skirtach AG, Volodkin D. Modification of Surfaces with Vaterite CaCO 3 Particles. MICROMACHINES 2022; 13:473. [PMID: 35334765 PMCID: PMC8954061 DOI: 10.3390/mi13030473] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/18/2022] [Revised: 03/15/2022] [Accepted: 03/16/2022] [Indexed: 02/07/2023]
Abstract
Former studies have demonstrated a strong interest toward the crystallization of CaCO3 polymorphs in solution. Nowadays, CaCO3 crystallization on solid surfaces is extensively being studied using biomolecules as substrates for the control of the growth aiming at various applications of CaCO3. Calcium carbonate exists in an amorphous state, as three anhydrous polymorphs (aragonite, calcite and vaterite), and as two hydrated polymorphs (monohydrocalcite and ikaite). The vaterite polymorph is considered as one of the most attractive forms due to its large surface area, biocompatibility, mesoporous nature, and other features. Based on physical or chemical immobilization approaches, vaterite can be grown directly on solid surfaces using various (bio)molecules, including synthetic polymers, biomacromolecules such as proteins and peptides, carbohydrates, fibers, extracellular matrix components, and even biological cells such as bacteria. Herein, the progress on the modification of solid surfaces by vaterite CaCO3 crystals is reviewed, focusing on main findings and the mechanism of vaterite growth initiated by various substances mentioned above, as well as the discussion of the applications of such modified surfaces.
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Affiliation(s)
- Bushra Zafar
- Department of Chemistry and Forensics, School of Science and Technology, Nottingham Trent University, Nottingham NG11 8NS, UK; (B.Z.); (J.C.); (J.C.)
| | - Jack Campbell
- Department of Chemistry and Forensics, School of Science and Technology, Nottingham Trent University, Nottingham NG11 8NS, UK; (B.Z.); (J.C.); (J.C.)
| | - Jake Cooke
- Department of Chemistry and Forensics, School of Science and Technology, Nottingham Trent University, Nottingham NG11 8NS, UK; (B.Z.); (J.C.); (J.C.)
| | - Andre G. Skirtach
- Nanotechnology Laboratory, Faculty of Bioscience Engineering, Ghent University, 9000 Ghent, Belgium;
| | - Dmitry Volodkin
- Department of Chemistry and Forensics, School of Science and Technology, Nottingham Trent University, Nottingham NG11 8NS, UK; (B.Z.); (J.C.); (J.C.)
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Yang G, Li F, Wang Y, Ji C, Huang L, Su Z, Li X, Zhang C. The effect of Bacillus cereus LV-1 on the crystallization and polymorphs of calcium carbonate. RSC Adv 2022; 12:26908-26921. [PMID: 36320852 PMCID: PMC9490766 DOI: 10.1039/d2ra04254a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2022] [Accepted: 09/03/2022] [Indexed: 11/21/2022] Open
Abstract
The study of CaCO3 polymorphism is of great significance for understanding the mechanism of carbonate mineralization induced by bacteria and the genesis of carbonate rock throughout geological history. To investigate the effect of bacteria and shear force on CaCO3 precipitation and polymorphs, biomineralization experiments with Bacillus cereus strain LV-1 were conducted under the standing and shaking conditions. The results show that LV-1 induced the formation of calcite and vaterite under the standing and shaking conditions, respectively. However, the results of mineralization in the media and the CaCl2 solution under both kinetic conditions suggest the shear force does not affect the polymorphs of calcium carbonate in abiotic systems. Further, mineralization experiments with bacterial cells and extracellular polymeric substances (EPS) were performed under the standing conditions. The results reveal that bacterial cells, bound EPS (BEPS), and soluble EPS (SEPS) are favorable to the formation of spherical, imperfect rhombohedral, and perfect rhombohedral minerals, respectively. The increase in the pH value and saturation index (SI) caused by LV-1 metabolism under the shear force played key roles in controlling vaterite precipitation, whereas bacterial cells and EPS do not play roles in promoting vaterite formation. Furthermore, we suggest that vaterite formed if pH > 8.5 and SIACC > 0.8, while calcite formed if pH was between 8.0–9.0 and SIACC < 0.8. Bacterial cells and BEPS are the main factors affecting CaCO3 morphologies in the mineralization process of LV-1. This may provide a deeper insight into the regulation mechanism of the polymorphs and morphologies during bacterially induced carbonate mineralization. The study of CaCO3 polymorphism is of great significance for understanding the mechanism of bacterial carbonate mineralization and the genesis of carbonate rock formation throughout geological history.![]()
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Affiliation(s)
- Guoguo Yang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Fuchun Li
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Yazhi Wang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Chen Ji
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Lingjie Huang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Zhimeng Su
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Xuelin Li
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
| | - Chonghong Zhang
- College of Resources and Environmental Sciences, Nanjing Agricultural University, Nanjing, 210095, China
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