1
|
Zagorodko O, Melnyk T, Nebot VJ, Dankers PYW, Vicent MJ. An Offset Patterned Cross-β Structure in Assemblies of C 3 -Symmetric Peptide Amphiphiles. Chemistry 2024; 30:e202303194. [PMID: 37967312 DOI: 10.1002/chem.202303194] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2023] [Revised: 11/11/2023] [Accepted: 11/15/2023] [Indexed: 11/17/2023]
Abstract
Developing peptide-based materials with controlled morphology is a critical theme of soft matter research. Herein, we report the formation of a novel, patterned cross-β structure formed by self-assembled C3 -symmetric peptide amphiphiles based on diphenylalanine and benzene-1,3,5-tricarboxamide (BTA). The cross-β motif is an abundant structural element in amyloid fibrils and aggregates of fibril-forming peptides, including diphenylalanine. The incorporation of topological constraints on one edge of the diphenylalanine fragment limits the number of β-strands in β-sheets and leads to the creation of an unconventional offset-patterned cross-β structure consisting of short 3×2 parallel β-sheets stabilized by phenylalanine zippers. In the reported assembly, two patterned cross-β structures bind parallel arrays of BTA stacks in a superstructure within a single-molecule-thick nanoribbon. In addition to a threefold network of hydrogen bonds in the BTA stack, each molecule becomes simultaneously bound by hydrogen bonds from three β-sheets and four phenylalanine zippers. The diffuse layer of alkyl chains with terminal polar groups prevents the nanoribbons from merging and stabilizes cross-β-structure in water. Our results provide a simple approach to the incorporation of novel patterned cross-β motifs into supramolecular superstructures and shed light on the general mechanism of β-sheet formation in C3 -symmetric peptide amphiphiles.
Collapse
Affiliation(s)
- Oleksandr Zagorodko
- Polymer Therapeutics Lab, Centro de Investigación Príncipe Felipe, C/d'Eduardo Primo Yúfera, 3, 46012, Valencia, Spain
- Institute for Complex Molecular Systems (ICMS), Eindhoven University of Technology, P. O. Box 513, 5600 MB, Eindhoven, The Netherlands
| | - Tetiana Melnyk
- Polymer Therapeutics Lab, Centro de Investigación Príncipe Felipe, C/d'Eduardo Primo Yúfera, 3, 46012, Valencia, Spain
- Centro de Investigación, Biomédica en Red en Oncología (CIBERONC), Av. Monforte de Lemos, 3-5, 28029, Madrid, Spain
| | - Vicent J Nebot
- Polymer Therapeutics Lab, Centro de Investigación Príncipe Felipe, C/d'Eduardo Primo Yúfera, 3, 46012, Valencia, Spain
- Curapath, Av. Benjamín Franklin, 19, 46980, Paterna, Valencia, Spain
| | - Patricia Y W Dankers
- Institute for Complex Molecular Systems (ICMS), Eindhoven University of Technology, P. O. Box 513, 5600 MB, Eindhoven, The Netherlands
| | - María J Vicent
- Polymer Therapeutics Lab, Centro de Investigación Príncipe Felipe, C/d'Eduardo Primo Yúfera, 3, 46012, Valencia, Spain
- Centro de Investigación, Biomédica en Red en Oncología (CIBERONC), Av. Monforte de Lemos, 3-5, 28029, Madrid, Spain
| |
Collapse
|
2
|
Lago-Silva M, Fernández-Míguez M, Rodríguez R, Quiñoá E, Freire F. Stimuli-responsive synthetic helical polymers. Chem Soc Rev 2024; 53:793-852. [PMID: 38105704 DOI: 10.1039/d3cs00952a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2023]
Abstract
Synthetic dynamic helical polymers (supramolecular and covalent) and foldamers share the helix as a structural motif. Although the materials are different, these systems also share many structural properties, such as helix induction or conformational communication mechanisms. The introduction of stimuli responsive building blocks or monomer repeating units in these materials triggers conformational or structural changes, due to the presence/absence of the external stimulus, which are transmitted to the helix resulting in different effects, such as assymetry amplification, helix inversion or even changes in the helical scaffold (elongation, J/H helical aggregates). In this review, we show through selected examples how different stimuli (e.g., temperature, solvents, cations, anions, redox, chiral additives, pH or light) can alter the helical structures of dynamic helical polymers (covalent and supramolecular) and foldamers acting on the conformational composition or molecular structure of their components, which is also transmitted to the macromolecular helical structure.
Collapse
Affiliation(s)
- María Lago-Silva
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, E-15782 Santiago de Compostela, Spain.
| | - Manuel Fernández-Míguez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, E-15782 Santiago de Compostela, Spain.
| | - Rafael Rodríguez
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, E-15782 Santiago de Compostela, Spain.
| | - Emilio Quiñoá
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, E-15782 Santiago de Compostela, Spain.
| | - Félix Freire
- Centro Singular de Investigación en Química Biolóxica e Materiais Moleculares (CiQUS) and Departamento de Química Orgánica, Universidade de Santiago de Compostela, E-15782 Santiago de Compostela, Spain.
| |
Collapse
|
3
|
Abstract
As an active branch within the field of supramolecular polymers, chiral supramolecular polymers (SPs) are an excellent benchmark to generate helical structures that can clarify the origin of homochirality in Nature or help determine new exciting functionalities of organic materials. Herein, we highlight the most utilized strategies to build up chiral SPs by using chiral monomeric units or external stimuli. Selected examples of transfer of asymmetry, in which the point or axial chirality contained by the monomeric units is efficiently transferred to the supramolecular scaffold yielding enantioenriched helical structures, will be presented. The importance of the thermodynamics and kinetics associated with those processes is stressed, especially the influence that parameters such as the helix reversal and mismatch penalties exert on the achievement of amplification of asymmetry in co-assembled systems will also be considered. Remarkable examples of breaking symmetry, in which chiral supramolecular polymers can be attained from achiral self-assembling units by applying external stimuli like stirring, solvent or light, are highlighted. Finally, the specific and promising applications of chiral supramolecular polymers are presented with recent relevant examples.
Collapse
Affiliation(s)
- Fátima García
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria s/n, 28040-Madrid, Spain.
| | - Rafael Gómez
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria s/n, 28040-Madrid, Spain.
| | - Luis Sánchez
- Departamento de Química Orgánica, Facultad de Ciencias Químicas, Universidad Complutense de Madrid, Ciudad Universitaria s/n, 28040-Madrid, Spain.
| |
Collapse
|
4
|
Vantomme G. Site selectivity steps in. Nat Chem 2023:10.1038/s41557-023-01237-7. [PMID: 37402790 DOI: 10.1038/s41557-023-01237-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/06/2023]
Affiliation(s)
- Ghislaine Vantomme
- Institute for Complex Molecular Systems, Department of Chemical Engineering and Chemistry, Eindhoven University of Technology, Eindhoven, The Netherlands.
| |
Collapse
|
5
|
Dimeric capsule vs columnar polymer: Structural factors determining the aggregation behavior of amino acid functionalized benzene-1,3,5-tricarboxamides in solution and in the solid-state. J Mol Liq 2022. [DOI: 10.1016/j.molliq.2022.120511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
|
6
|
Tan M, Takeuchi M, Takai A. Spatiotemporal dynamics of supramolecular polymers by in situ quantitative catalyst-free hydroamination. Chem Sci 2022; 13:4413-4423. [PMID: 35509456 PMCID: PMC9006958 DOI: 10.1039/d2sc00035k] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2022] [Accepted: 03/22/2022] [Indexed: 01/07/2023] Open
Abstract
Implementing chemical reactivity into synthetic supramolecular polymers based on π-conjugated molecules has been of great interest to create functional materials with spatiotemporal dynamic properties. However, the development of an in situ chemical reaction within supramolecular polymers is still in its infancy, because one needs to design optimal π-conjugated monomers having excellent reactivity under mild conditions possibly without byproducts or a catalyst. Herein we report the synthesis of a supramolecular polymer based on ethynyl core-substituted naphthalenediimide (S-NDI2) molecules that react with various amines quantitatively in a nonpolar solvent, without a catalyst, at 298 K. Most interestingly, the in situ reaction of the S-NDI2 supramolecular polymer with a linear aliphatic diamine proceeded much faster than the homogeneous reaction of a monomeric naphthalenediimide with the same diamine, affording diamine-linked S-NDI2 oligomers and polymers. The acceleration of in situ hydroamination was presumably due to rapid intra-supramolecular cross-linking between ethynyl and amino groups fixed in close proximity within the supramolecular polymer. Such intra-supramolecular cross-linking did not occur efficiently with an incompatible diamine. The systematic kinetic studies of in situ catalyst-free hydroamination within supramolecular polymers provide us with a useful, facile and versatile tool kit for designing dynamic supramolecular polymeric materials based on electron-deficient π-conjugated monomers.
Collapse
Affiliation(s)
- Minghan Tan
- Molecular Design and Function Group, National Institute for Materials Science (NIMS) 1-2-1 Sengen Tsukuba Ibaraki 305-0047 Japan .,Department of Materials Science and Engineering, Faculty of Pure and Applied Sciences, University of Tsukuba 1-1-1 Tennodai Tsukuba Ibaraki 305-8577 Japan
| | - Masayuki Takeuchi
- Molecular Design and Function Group, National Institute for Materials Science (NIMS) 1-2-1 Sengen Tsukuba Ibaraki 305-0047 Japan .,Department of Materials Science and Engineering, Faculty of Pure and Applied Sciences, University of Tsukuba 1-1-1 Tennodai Tsukuba Ibaraki 305-8577 Japan
| | - Atsuro Takai
- Molecular Design and Function Group, National Institute for Materials Science (NIMS) 1-2-1 Sengen Tsukuba Ibaraki 305-0047 Japan
| |
Collapse
|
7
|
Coste M, Suárez-Picado E, Ulrich S. Hierarchical self-assembly of aromatic peptide conjugates into supramolecular polymers: it takes two to tango. Chem Sci 2022; 13:909-933. [PMID: 35211257 PMCID: PMC8790784 DOI: 10.1039/d1sc05589e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2021] [Accepted: 12/10/2021] [Indexed: 12/26/2022] Open
Abstract
Supramolecular polymers are self-assembled materials displaying adaptive and responsive "life-like" behaviour which are often made of aromatic compounds capable of engaging in π-π interactions to form larger assemblies. Major advances have been made recently in controlling their mode of self-assembly, from thermodynamically-controlled isodesmic to kinetically-controlled living polymerization. Dynamic covalent chemistry has been recently implemented to generate dynamic covalent polymers which can be seen as dynamic analogues of biomacromolecules. On the other hand, peptides are readily-available and structurally-rich building blocks that can lead to secondary structures or specific functions. In this context, the past decade has seen intense research activity in studying the behaviour of aromatic-peptide conjugates through supramolecular and/or dynamic covalent chemistries. Herein, we review those impressive key achievements showcasing how aromatic- and peptide-based self-assemblies can be combined using dynamic covalent and/or supramolecular chemistry, and what it brings in terms of the structure, self-assembly pathways, and function of supramolecular and dynamic covalent polymers.
Collapse
Affiliation(s)
- Maëva Coste
- IBMM, Institut des Biomolécules Max Mousseron, CNRS, Université de Montpellier, ENSCM Montpellier France
| | - Esteban Suárez-Picado
- IBMM, Institut des Biomolécules Max Mousseron, CNRS, Université de Montpellier, ENSCM Montpellier France
| | - Sébastien Ulrich
- IBMM, Institut des Biomolécules Max Mousseron, CNRS, Université de Montpellier, ENSCM Montpellier France
| |
Collapse
|