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Saw S, Costigliola L, Dyre JC. Active-parameter polydispersity in the 2d ABP Yukawa model. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2024; 36:145101. [PMID: 38096579 DOI: 10.1088/1361-648x/ad15c7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 12/14/2023] [Indexed: 01/05/2024]
Abstract
In experiments and simulations of passive as well as active matter the most commonly studied kind of parameter polydispersity is that of varying particles size. This paper investigates by simulations the effects of introducing polydispersity in other parameters for two-dimensional active Brownian particles with Yukawa pair interactions. Polydispersity is studied separately in the translational and rotational diffusion coefficients, as well as in the swim velocityv0. Uniform and binary parameter distributions are considered in the homogeneous and the motility-induced phase-separation (MIPS) phases. We find only minute changes in structure and dynamics upon the introduction of parameter polydispersity, even for situations involving 50% polydispersity. The reason for this is not clear. An exception is the case ofv0polydispersity for which the average radial distribution function with changing polydispersity shows significant variations in the MIPS phase. Even in this case, however, the dynamics is only modestly affected. As a possible application of our findings, we suggest that a temporary introduction of polydispersity into a single-component active-matter model characterized by a very long equilibration time, i.e. a glass-forming active system, may be used to equilibrate the system efficiently by particle swaps.
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Affiliation(s)
- Shibu Saw
- Glass and Time, IMFUFA, Department of Science and Environment, Roskilde University, PO Box 260, DK-4000 Roskilde, Denmark
| | - Lorenzo Costigliola
- Glass and Time, IMFUFA, Department of Science and Environment, Roskilde University, PO Box 260, DK-4000 Roskilde, Denmark
| | - Jeppe C Dyre
- Glass and Time, IMFUFA, Department of Science and Environment, Roskilde University, PO Box 260, DK-4000 Roskilde, Denmark
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Schiltz-Rouse E, Row H, Mallory SA. Kinetic temperature and pressure of an active Tonks gas. Phys Rev E 2023; 108:064601. [PMID: 38243499 DOI: 10.1103/physreve.108.064601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 11/06/2023] [Indexed: 01/21/2024]
Abstract
Using computer simulation and analytical theory, we study an active analog of the well-known Tonks gas, where active Brownian particles are confined to a periodic one-dimensional (1D) channel. By introducing the notion of a kinetic temperature, we derive an accurate analytical expression for the pressure and clarify the paradoxical behavior where active Brownian particles confined to 1D exhibit anomalous clustering but no motility-induced phase transition. More generally, this work provides a deeper understanding of pressure in active systems as we uncover a unique link between the kinetic temperature and swim pressure valid for active Brownian particles in higher dimensions.
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Affiliation(s)
- Elijah Schiltz-Rouse
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Hyeongjoo Row
- Department of Chemical and Biomolecular Engineering, UC Berkeley, Berkeley, California 94720, USA
| | - Stewart A Mallory
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
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3
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Dinelli A, O'Byrne J, Curatolo A, Zhao Y, Sollich P, Tailleur J. Non-reciprocity across scales in active mixtures. Nat Commun 2023; 14:7035. [PMID: 37923724 PMCID: PMC10624904 DOI: 10.1038/s41467-023-42713-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2023] [Accepted: 10/19/2023] [Indexed: 11/06/2023] Open
Abstract
In active matter, particles typically experience mediated interactions, which are not constrained by Newton's third law and are therefore generically non-reciprocal. Non-reciprocity leads to a rich set of emerging behaviors that are hard to account for starting from the microscopic scale, due to the absence of a generic theoretical framework out of equilibrium. Here we consider bacterial mixtures that interact via mediated, non-reciprocal interactions (NRI) like quorum-sensing and chemotaxis. By explicitly relating microscopic and macroscopic dynamics, we show that, under conditions that we derive explicitly, non-reciprocity may fade upon coarse-graining, leading to large-scale equilibrium descriptions. In turn, this allows us to account quantitatively, and without fitting parameters, for the rich behaviors observed in microscopic simulations including phase separation, demixing, and multi-phase coexistence. We also derive the condition under which non-reciprocity survives coarse-graining, leading to a wealth of dynamical patterns. Again, our analytical approach allows us to predict the phase diagram of the system starting from its microscopic description. All in all, our work demonstrates that the fate of non-reciprocity across scales is a subtle and important question.
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Affiliation(s)
- Alberto Dinelli
- Université Paris Cité, Laboratoire Matière et Systèmes Complexes (MSC), UMR 7057 CNRS, F-75205, Paris, France
| | - Jérémy O'Byrne
- Université Paris Cité, Laboratoire Matière et Systèmes Complexes (MSC), UMR 7057 CNRS, F-75205, Paris, France
- Department of Applied Maths and Theoretical Physics, University of Cambridge, Centre for Mathematical Sciences, Wilberforce Rd, Cambridge, CB3 0WA, UK
| | - Agnese Curatolo
- John A. Paulson School of Engineering and Applied Sciences and Kavli Institute for Bionano Science and Technology, Harvard University, Cambridge, MA, 02138, USA
| | - Yongfeng Zhao
- Center for Soft Condensed Matter Physics and Interdisciplinary Research & School of Physical Science and Technology, Soochow University, 215006, Suzhou, China
| | - Peter Sollich
- Institute for Theoretical Physics, Georg-August-Universität Göttingen, 37 077, Göttingen, Germany
- Department of Mathematics, King's College London, London, WC2R 2LS, UK
| | - Julien Tailleur
- Université Paris Cité, Laboratoire Matière et Systèmes Complexes (MSC), UMR 7057 CNRS, F-75205, Paris, France.
- Department of Physics, Massachusetts Institute of Technology, Cambridge, MA, 02139, USA.
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de Castro P, Urbina F, Norambuena A, Guzmán-Lastra F. Sequential epidemic-like spread between agglomerates of self-propelled agents in one dimension. Phys Rev E 2023; 108:044104. [PMID: 37978653 DOI: 10.1103/physreve.108.044104] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2023] [Accepted: 09/13/2023] [Indexed: 11/19/2023]
Abstract
Motile organisms can form stable agglomerates such as cities or colonies. In the outbreak of a highly contagious disease, the control of large-scale epidemic spread depends on factors like the number and size of agglomerates, travel rate between them, and disease recovery rate. While the emergence of agglomerates permits early interventions, it also explains longer real epidemics. In this work, we study the spread of susceptible-infected-recovered (SIR) epidemics (or any sort of information exchange by contact) in one-dimensional spatially structured systems. By working in one dimension, we establish a necessary foundation for future investigation in higher dimensions and mimic micro-organisms in narrow channels. We employ a model of self-propelled particles which spontaneously form multiple clusters. For a lower rate of stochastic reorientation, particles have a higher tendency to agglomerate and therefore the clusters become larger and less numerous. We examine the time evolution averaged over many epidemics and how it is affected by the existence of clusters through the eventual recovery of infected particles before reaching new clusters. New terms appear in the SIR differential equations in the last epidemic stages. We show how the final number of ever-infected individuals depends nontrivially on single-individual parameters. In particular, the number of ever-infected individuals first increases with the reorientation rate since particles escape sooner from clusters and spread the disease. For higher reorientation rate, travel between clusters becomes too diffusive and the clusters too small, decreasing the number of ever-infected individuals.
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Affiliation(s)
- Pablo de Castro
- ICTP-South American Institute for Fundamental Research - Instituto de Física Teórica da UNESP, Rua Dr. Bento Teobaldo Ferraz 271, 01140-070 São Paulo, Brazil
| | - Felipe Urbina
- Centro Multidisciplinario de Física, Universidad Mayor, Huechuraba, 8580745 Santiago, Chile
| | - Ariel Norambuena
- Centro Multidisciplinario de Física, Universidad Mayor, Huechuraba, 8580745 Santiago, Chile
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Siebers F, Jayaram A, Blümler P, Speck T. Exploiting compositional disorder in collectives of light-driven circle walkers. SCIENCE ADVANCES 2023; 9:eadf5443. [PMID: 37058561 PMCID: PMC10104457 DOI: 10.1126/sciadv.adf5443] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Accepted: 03/15/2023] [Indexed: 06/19/2023]
Abstract
Emergent behavior in collectives of "robotic" units with limited capabilities that is robust and programmable is a promising route to perform tasks on the micro and nanoscale that are otherwise difficult to realize. However, a comprehensive theoretical understanding of the physical principles, in particular steric interactions in crowded environments, is still largely missing. Here, we study simple light-driven walkers propelled through internal vibrations. We demonstrate that their dynamics is well captured by the model of active Brownian particles, albeit with an angular speed that differs between individual units. Transferring to a numerical model, we show that this polydispersity of angular speeds gives rise to specific collective behavior: self-sorting under confinement and enhancement of translational diffusion. Our results show that, while naively perceived as imperfection, disorder of individual properties can provide another route to realize programmable active matter.
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Rojas-Vega M, de Castro P, Soto R. Wetting dynamics by mixtures of fast and slow self-propelled particles. Phys Rev E 2023; 107:014608. [PMID: 36797971 DOI: 10.1103/physreve.107.014608] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2022] [Accepted: 01/06/2023] [Indexed: 01/26/2023]
Abstract
We study active surface wetting using a minimal model of bacteria that takes into account the intrinsic motility diversity of living matter. A mixture of "fast" and "slow" self-propelled Brownian particles is considered in the presence of a wall. The evolution of the wetting layer thickness shows an overshoot before stationarity and its composition evolves in two stages, equilibrating after a slow elimination of excess particles. Nonmonotonic evolutions are shown to arise from delayed avalanches towards the dilute phase combined with the emergence of a transient particle front.
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Affiliation(s)
| | - Pablo de Castro
- ICTP South American Institute for Fundamental Research & Instituto de Física Teórica, Universidade Estadual Paulista - UNESP, 01140-070 São Paulo, Brazil
| | - Rodrigo Soto
- Departamento de Física, FCFM, Universidad de Chile, Avenida Blanco Encalada 2008, Santiago, Chile
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