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Alvares CMS, Semino R. Force matching and iterative Boltzmann inversion coarse grained force fields for ZIF-8. J Chem Phys 2024; 160:094115. [PMID: 38445731 DOI: 10.1063/5.0190807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Accepted: 02/06/2024] [Indexed: 03/07/2024] Open
Abstract
Despite the intense activity at electronic and atomistic resolutions, coarse grained (CG) modeling of metal-organic frameworks remains largely unexplored. One of the main reasons for this is the lack of adequate CG force fields. In this work, we present iterative Boltzmann inversion and force matching (FM) force fields for modeling ZIF-8 at three different coarse grained resolutions. Their ability to reproduce structure, elastic tensor, and thermal expansion is evaluated and compared with that of MARTINI force fields considered in previous work [Alvares et al., J. Chem. Phys. 158, 194107 (2023)]. Moreover, MARTINI and FM are evaluated for their ability to depict the swing effect, a subtle phase transition ZIF-8 undergoes when loaded with guest molecules. Overall, we found that all our force fields reproduce structure reasonably well. Elastic constants and volume expansion results are analyzed, and the technical and conceptual challenges of reproducing them are explained. Force matching exhibits promising results for capturing the swing effect. This is the first time these CG methods, widely applied in polymer and biomolecule communities, are deployed to model porous solids. We highlight the challenges of fitting CG force fields for these materials.
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Affiliation(s)
| | - Rocio Semino
- Sorbonne Université, CNRS, Physico-chimie des Electrolytes et Nanosystèmes Interfaciaux, PHENIX, F-75005 Paris, France
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Zhang D, Wang Y, Safaripour M, Bellido-Aguilar DA, Van Donselaar KR, Webster DC, Croll AB, Xia W. Energy renormalization for temperature transferable coarse-graining of silicone polymer. Phys Chem Chem Phys 2024; 26:4541-4554. [PMID: 38241021 DOI: 10.1039/d3cp05969c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
Abstract
The bottom-up prediction of thermodynamic and mechanical behaviors of polymeric materials based on molecular dynamics (MD) simulation is of critical importance in polymer physics. Although the atomistically informed coarse-grained (CG) model can access greater spatiotemporal scales and retain essential chemical specificity, the temperature-transferable CG model is still a big challenge and hinders widespread application of this technique. Herein, we use a silicone polymer, i.e., polydimethylsiloxane (PDMS), having an incredibly low chain rigidity as a model system, combined with an energy-renormalization (ER) approach, to systematically develop a temperature-transferable CG model. Specifically, by introducing temperature-dependent ER factors to renormalize the effective distance and cohesive energy parameters, the developed CG model faithfully preserved the dynamics, mechanical and conformational behaviors compared with the target all-atomistic (AA) model from glassy to melt regimes, which was further validated by experimental data. With the developed CG model featuring tremendously improved computational efficiency, we systematically explored the influences of cohesive interaction strength and temperature on the dynamical heterogeneity and mechanical response of polymers, where we observed consistent trends with other linear polymers with varying chain rigidity and monomeric structures. This study serves as an extension of our proposed ER approach of developing temperature transferable CG models with diverse segmental structures, highlighting the critical role of cohesive interaction strength on CG modeling of polymer dynamics and thermomechanical behaviors.
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Affiliation(s)
- Dawei Zhang
- Department of Civil, Construction, and Environmental Engineering, North Dakota State University, Fargo, ND 58108, USA
| | - Yang Wang
- Zernike Institute for Advanced Materials, University of Groningen, 9747 AG, Groningen, The Netherlands
| | - Maryam Safaripour
- Department of Coatings and Polymeric Materials, North Dakota State University, Fargo, ND 58108, USA
| | - Daniel A Bellido-Aguilar
- Department of Coatings and Polymeric Materials, North Dakota State University, Fargo, ND 58108, USA
| | | | - Dean C Webster
- Department of Coatings and Polymeric Materials, North Dakota State University, Fargo, ND 58108, USA
| | - Andrew B Croll
- Department of Physics, North Dakota State University, Fargo, ND 58108, USA
| | - Wenjie Xia
- Department of Aerospace Engineering, Iowa State University, Ames, IA 50011, USA.
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Celik N, Sahin F, Ruzi M, Ceylan A, Butt HJ, Onses MS. Mechanochemical Activation of Silicone for Large-Scale Fabrication of Anti-Biofouling Liquid-like Surfaces. ACS APPLIED MATERIALS & INTERFACES 2023; 15:54060-54072. [PMID: 37953492 DOI: 10.1021/acsami.3c11352] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/14/2023]
Abstract
Large-scale preparation of liquid-like coatings with perfect transparency via solventless and room-temperature processes using low-cost and biocompatible materials is of tremendous interest for a broad range of applications. Here, we present a mechanochemical activation strategy for solventless grafting of poly(dimethylsiloxane) (PDMS) onto glass, silicon wafers, and ceramics. Activation is achieved via ball milling PDMS without using any solvents or additives prior to application. Ball milling results in chain scission and generation of free radicals, allowing room-temperature grafting at durations ≤1 h. The deposition of ball-milled PDMS can be facilitated by brushing or drop-casting, enabling large-scale applications. The resulting surfaces facilitate the sliding of droplets at angles <20° for liquids with surface tension ranging from 22 to 73 mN/m. An important application for public health is generating anti-biofouling coatings on sanitary ware. For example, PDMS-grafted surfaces prepared on a regular-size toilet bowl exhibit a 105-fold decrease in the attachment of bacteria from urine. These findings highlight the significant potential of mechanochemical processes for the practical preparation of liquid-like surfaces.
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Affiliation(s)
- Nusret Celik
- ERNAM─Erciyes University Nanotechnology Application and Research Center, 38039 Kayseri, Turkey
- Department of Materials Science and Engineering, Erciyes University, 38039 Kayseri, Turkey
| | - Furkan Sahin
- ERNAM─Erciyes University Nanotechnology Application and Research Center, 38039 Kayseri, Turkey
- Department of Biomedical Engineering, Faculty of Engineering and Architecture, Beykent University, 34398 Istanbul, Turkey
| | - Mahmut Ruzi
- ERNAM─Erciyes University Nanotechnology Application and Research Center, 38039 Kayseri, Turkey
| | - Ahmet Ceylan
- Faculty of Pharmacy, Erciyes University, 38039 Kayseri, Turkey
| | - Hans-Jürgen Butt
- Max Planck Institute for Polymer Research, D-55128 Mainz, Germany
| | - Mustafa Serdar Onses
- ERNAM─Erciyes University Nanotechnology Application and Research Center, 38039 Kayseri, Turkey
- Department of Materials Science and Engineering, Erciyes University, 38039 Kayseri, Turkey
- UNAM-National Nanotechnology Research Center, Institute of Materials Science and Nanotechnology, Bilkent University, 06800 Ankara, Turkey
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