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Legon AC. An Assessment of Radial Potential Functions for the Halogen Bond: Pseudo-Diatomic Models for Axially Symmetric Complexes B⋅⋅⋅ClF (B=N 2 , CO, PH 3 , HCN, and NH 3 ). Chempluschem 2021; 86:731-740. [PMID: 33942569 DOI: 10.1002/cplu.202100122] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Revised: 03/31/2021] [Indexed: 11/05/2022]
Abstract
The radial potential energy is calculated ab initio at the explicitly correlated level of theory CCSD(T)(F12c)/cc-pVTZ-F12 for the five axially symmetric, halogen-bonded complexes B⋅⋅⋅ClF (B=N2 , CO, PH3 , HCN, and NH3 ) as a function of the intermolecular distance r. The PE curves are fitted by the Hulburt-Hirschfelder analytical function under the assumption of a pseudo-diatomic model. The spectroscopic constants ω σ and ω σ x σ , and α σ of the intermolecular stretching mode υ σ are calculated by two closely related approaches. The first involves derivatives of a polynomial fitted to the ab initio calculated points near to re and evaluated at r=re . The second uses the constants of the fitted H-H function. Both procedures are tested on 35 ClF by fitting (a) its RKR-type function and (b) the CCSD(T)(F12c)/cc-pVTZ-F12 version. The complexes OC⋅⋅⋅ClF and H3 P⋅⋅⋅ClF behave differently from the other three. A point of inflection/secondary minimum with a shortened r(C⋅⋅⋅Cl) and an increased r(Cl-F) detected for B=CO, suggests a second isomer with a significant contribution from the valence-bond structure OC+ Cl⋅⋅⋅F- . The shape of the ab initio calculated function for H3 P⋅⋅⋅ClF is different from those involving B=N2 , HCN, or NH3 , a difference attributed to H3 PCl+ ⋅⋅⋅F- character. The ab initio generated curve for H3 P⋅⋅⋅ClF is, nevertheless, satisfactorily fitted by the three-parameter H-H function.
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Affiliation(s)
- Anthony C Legon
- School of Chemistry, University of Bristol, Cantock's Close, Bristol, BS8 1TS, UK
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An Interacting Quantum Atoms (IQA) and Relative Energy Gradient (REG) Study of the Halogen Bond with Explicit Analysis of Electron Correlation. Molecules 2020; 25:molecules25112674. [PMID: 32526931 PMCID: PMC7321288 DOI: 10.3390/molecules25112674] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2020] [Revised: 06/03/2020] [Accepted: 06/03/2020] [Indexed: 01/18/2023] Open
Abstract
Energy profiles of seven halogen-bonded complexes were analysed with the topological energy partitioning called Interacting Quantum Atoms (IQA) at MP4(SDQ)/6-31+G(2d,2p) level of theory. Explicit interatomic electron correlation energies are included in the analysis. Four complexes combine X2 (X = Cl or F) with HCN or NH3, while the remaining three combine ClF with HCN, NH3 or N2. Each complex was systematically deformed by translating the constituent molecules along its central axis linking X and N, and reoptimising its remaining geometry. The Relative Energy Gradient (REG) method (Theor. Chem. Acc. 2017, 136, 86) then computes which IQA energies most correlate with the total energy during the process of complex formation and further compression beyond the respective equilibrium geometries. It turns out that the covalent energy (i.e., exchange) of the halogen bond, X…N, itself drives the complex formation. When the complexes are compressed from their equilibrium to shorter X…N distance then the intra-atomic energy of N is in charge. When the REG analysis is restricted to electron correlation then the interatomic correlation energy between X and N again drives the complex formation, and the complex compression is best described by the destabilisation of the through-space correlation energy between N and the "outer" halogen.
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Alkorta I, Legon A. Strengths of non-covalent interactions in hydrogen-bonded complexes B⋯HX and halogen-bonded complexes B⋯XY (X, Y = F, Cl): an ab initio investigation. NEW J CHEM 2018. [DOI: 10.1039/c8nj00470f] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The intermolecular quadratic stretching force constants kcalc.σ of a series of hydrogen-bonded and halogen bonded complexes B⋯HX and B⋯XY, where B is N2, CO, HCCH, C2H4, H2S, PH3, HCN, or NH3.
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Affiliation(s)
- Ibon Alkorta
- Instituto de Química Médica (IQM-CSIC)
- Juan de la Cierva
- 3
- E-28006 Madrid
- Spain
| | - Anthony Legon
- School of Chemistry
- University of Bristol
- Cantock's Close
- Bristol BS8 1TS
- UK
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Abstract
The halogen bond occurs when there is evidence of a net attractive interaction between an electrophilic region associated with a halogen atom in a molecular entity and a nucleophilic region in another, or the same, molecular entity. In this fairly extensive review, after a brief history of the interaction, we will provide the reader with a snapshot of where the research on the halogen bond is now, and, perhaps, where it is going. The specific advantages brought up by a design based on the use of the halogen bond will be demonstrated in quite different fields spanning from material sciences to biomolecular recognition and drug design.
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Affiliation(s)
- Gabriella Cavallo
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
| | - Pierangelo Metrangolo
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
- VTT-Technical
Research Centre of Finland, Biologinkuja 7, 02150 Espoo, Finland
| | - Roberto Milani
- VTT-Technical
Research Centre of Finland, Biologinkuja 7, 02150 Espoo, Finland
| | - Tullio Pilati
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
| | - Arri Priimagi
- Department
of Chemistry and Bioengineering, Tampere
University of Technology, Korkeakoulunkatu 8, FI-33101 Tampere, Finland
| | - Giuseppe Resnati
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
| | - Giancarlo Terraneo
- Laboratory
of Nanostructured Fluorinated Materials (NFMLab), Department of Chemistry,
Materials and Chemical Engineering “Giulio Natta”, Politecnico di Milano, Via L. Mancinelli 7, I-20131 Milano, Italy
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Legon AC. A reduced radial potential energy function for the halogen bond and the hydrogen bond in complexes B···XY and B···HX, where X and Y are halogen atoms. Phys Chem Chem Phys 2015; 16:12415-21. [PMID: 24827860 DOI: 10.1039/c4cp01444h] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
It is shown by considering 76 halogen- and hydrogen-bonded complexes BXY and BHX (where B is a Lewis base N2, CO, C2H2, C2H4, H2S, HCN, H2O, PH3 or NH3 and X, Y are F, Cl, Br or I) that the intermolecular stretching force constants kσ (determined from experimental centrifugal distortion constants via a simple model) and the intermolecular dissociation energies Dσ (calculated at the CCSD(T)(F12*)/cc-pVDZ-F12 level of theory) are related by Dσ = Cσkσ, where Cσ = 1.50(3) × 10(3) m(2) mol(-1). This suggests that one-dimensional functions implying direct proportionality of Dσ and kσ, (e.g. a Morse or Rydberg function) might serve as reduced radial potential energy functions for such complexes.
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Affiliation(s)
- Anthony C Legon
- School of Chemistry, University of Bristol, Cantock's Close, Bristol BS8 1TS, UK.
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Anable JP, Hird DE, Stephens SL, Zaleski DP, Walker NR, Legon AC. Characterisation of the weak halogen bond in N2⋯ICF3 by pure rotational spectroscopy. Chem Phys Lett 2015. [DOI: 10.1016/j.cplett.2015.02.023] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Young NA. Main group coordination chemistry at low temperatures: A review of matrix isolated Group 12 to Group 18 complexes. Coord Chem Rev 2013. [DOI: 10.1016/j.ccr.2012.10.013] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Del Bene JE, Alkorta I, Elguero J. Spin−Spin Coupling across Intermolecular F−Cl···N Halogen Bonds. J Phys Chem A 2008; 112:7925-9. [DOI: 10.1021/jp804119r] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Janet E. Del Bene
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555, Instituto de Química Médica, CSIC, Juan de la Cierva 3, 28006 Madrid, Spain
| | - Ibon Alkorta
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555, Instituto de Química Médica, CSIC, Juan de la Cierva 3, 28006 Madrid, Spain
| | - José Elguero
- Department of Chemistry, Youngstown State University, Youngstown, Ohio 44555, Instituto de Química Médica, CSIC, Juan de la Cierva 3, 28006 Madrid, Spain
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Davey J, Legon A, Waclawik E. Measurement of inter- and intramolecular charge transfer in the complex N 2 ⋯ICl from analysis of halogen nuclear quadrupole hyperfine structure in the rotational spectrum. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s0166-1280(00)00377-8] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Rotational spectrum of CH 3 CN⋯ClF and evidence for the +I effect of a CH 3 group on the ‘chlorine’ bond N⋯ClF. J Mol Struct 1999. [DOI: 10.1016/s0022-2860(99)00211-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Legon AC. Präreaktive Komplexe der Dihalogene XY mit Lewis-Basen B in der Gasphase: eine systematische Studie der Halogen-Analoga B⋅⋅⋅XY der Wasserstoffbrückenbindungen B⋅⋅⋅HX. Angew Chem Int Ed Engl 1999. [DOI: 10.1002/(sici)1521-3757(19990917)111:18<2850::aid-ange2850>3.0.co;2-6] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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Cooke S, Holloway J, Legon A. Rotational spectrum of thiophene⋯ClF and the role of thiophene as a π- or n-electron pair donor in weakly bound complexes. Chem Phys Lett 1998. [DOI: 10.1016/s0009-2614(98)01200-7] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Waclawik E, Legon A, Holloway J. Rotational spectrum of the nitrogen trifluoride–chlorine monofluoride complex and the inductive effect of groups R=CH3, H, F on R3N/ClF interactions. Chem Phys Lett 1998. [DOI: 10.1016/s0009-2614(98)00962-2] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Cooke SA, Corlett GK, Evans CM, Legon AC, Holloway JH. Angular geometries of complexes containing the O⋯Cl–F linkage: Rotational spectrum of formaldehyde⋯chlorine monofluoride. J Chem Phys 1998. [DOI: 10.1063/1.475362] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Legon A. Nature of complexes B … ClF in the gas phase: Conclusions from systematic variation of the Lewis base B and a comparison of the B … ClF/B … HCl series. Chem Phys Lett 1997. [DOI: 10.1016/s0009-2614(97)01095-6] [Citation(s) in RCA: 25] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Cooke S, Legon A, Holloway J. Properties of a complex of carbon dioxide and chlorine monofluoride from rotational spectroscopy: identification of an extremely weak interaction. J Mol Struct 1997. [DOI: 10.1016/s0022-2860(96)09607-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Cooke S, Holloway J, Legon A. The rotational spectrum and angular geometry of a pre-reactive complex of allene and chlorine monofluoride. Chem Phys Lett 1997. [DOI: 10.1016/s0009-2614(96)01515-1] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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