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Yang X, Zhu Y, Chen X, Gao X, Jin S, Liu B, He L, Chen B, Wang D. Molecular structures of ten ionic hydrogen bond-mediated anhydrous tert-butylammonium salts from different carboxylic acids. J Mol Struct 2022. [DOI: 10.1016/j.molstruc.2021.131917] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Mondal B, Captain B, Ramamurthy V. Volume demanding geometric isomerization of cis-4-stilbazole. HCl salts in the crystalline state: Probing the role of a metastable dimer. J Photochem Photobiol A Chem 2016. [DOI: 10.1016/j.jphotochem.2015.07.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
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Sasaki T, Ida Y, Hisaki I, Yuge T, Uchida Y, Tohnai N, Miyata M. Characterization of Supramolecular Hidden Chirality of Hydrogen-Bonded Networks by Advanced Graph Set Analysis. Chemistry 2014; 20:2478-87. [PMID: 24677311 DOI: 10.1002/chem.201303770] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2013] [Indexed: 11/09/2022]
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Ohashi Y. Dynamic motion and various reaction paths of cobaloxime complexes in crystalline-state photoreaction. CRYSTALLOGR REV 2013. [DOI: 10.1080/0889311x.2012.752820] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Lemmerer A. Steric effects in hydrogen bonded columns of salts of benzoic acid and 1-adamantanecarboxylic acid with the cyclic amines CnH2n+1NH2, n = 5, 6, 7, 8 and 12. CrystEngComm 2011. [DOI: 10.1039/c0ce00749h] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Rao AS, Tripuramallu BK, Ravada K, Das SK. 2-Amino-anilinium 2-chloro-acetate. Acta Crystallogr Sect E Struct Rep Online 2010; 66:o1945. [PMID: 21588271 PMCID: PMC3007232 DOI: 10.1107/s1600536810024554] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2010] [Accepted: 06/23/2010] [Indexed: 11/10/2022]
Abstract
In the crystal structure of the title compound, C6H9N2+·ClCH2COO−, prepared by the reaction of OPDA (orthophenelynediamine) with chloroacetic acid, N—H⋯O hydrogen bonds generate ladder-like chains and very weak intermolecular C—H⋯Cl hydrogen-bonding interactions between the anions and cations lead to a supramolecular network. C—H⋯O interactions also occur.
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Affiliation(s)
- A Srinivasa Rao
- School of Chemistry, University of Hyderabad, Hyderabad 500 046, India
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Hernández Linares MG, Guerrero Luna G, Bernès S. (R)-1-Phenyl-ethyl-ammonium trifluoro-acetate. Acta Crystallogr Sect E Struct Rep Online 2010; 66:o1118. [PMID: 21579169 PMCID: PMC2979250 DOI: 10.1107/s1600536810013565] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2010] [Accepted: 04/13/2010] [Indexed: 11/11/2022]
Abstract
In the crystal structure of the title salt, C(8)H(12)N(+)·C(2)F(3)O(2) (-), all of the ammonium H atoms serve as donors for hydrogen bonds to carboxyl-ate O atoms, forming an R(4) (3)(10) ring motif based on two cations and two anions. Since both cations and anions act as inter-ion bridging groups, R(10) rings aggregate in a one-dimensional supra-molecular network by sharing the strongest N-H⋯O bond. Edge-sharing motifs lie on the twofold screw axis parallel to [010], and anti-parallel packing of these 2(1)-column structural units results in the crystal structure. This arrangement is one of the most commonly occurring in conglomerates of chiral 1-phenyl-ethyl-amine with achiral monocarboxylic acids, confirming that these ionic salts are particularly robust supra-molecular heterosynthons useful in crystal engineering.
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Lemmerer A, Bourne SA, Caira MR, Cotton J, Hendricks U, Peinke LC, Trollope L. Incorporating active pharmaceutical ingredients into a molecular salt using a chiral counterion. CrystEngComm 2010. [DOI: 10.1039/c0ce00043d] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Mizobe Y, Hinoue T, Yamamoto A, Hisaki I, Miyata M, Hasegawa Y, Tohnai N. Systematic Investigation of Molecular Arrangements and Solid-State Fluorescence Properties on Salts of Anthracene-2,6-disulfonic Acid with Aliphatic Primary Amines. Chemistry 2009; 15:8175-84. [DOI: 10.1002/chem.200900773] [Citation(s) in RCA: 71] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Ionkin AS, Marshall WJ, Fish BM. Highly Sterically Hindered Olefins: A Case of E- and Z-Di-tert-butyl α,β-Unsaturated Acids. Org Lett 2008; 10:2303-5. [DOI: 10.1021/ol800808g] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Alex S. Ionkin
- DuPont Central Research & Development, Experimental Station, Wilmington, Delaware 19880-0500
| | - William J. Marshall
- DuPont Central Research & Development, Experimental Station, Wilmington, Delaware 19880-0500
| | - Brian M. Fish
- DuPont Central Research & Development, Experimental Station, Wilmington, Delaware 19880-0500
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Lemmerer A, Bourne SA, Fernandes MA. Disruption of a robust supramolecular heterosynthon in achiral benzylammonium and (pyridylmethyl)ammonium m-iodobenzoate salts. CrystEngComm 2008. [DOI: 10.1039/b811789f] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Furukawa D, Kobatake S, Matsumoto A. Direct observation of change in the molecular structure of benzyl (Z,Z)-muconate during photoisomerization in the solid state. Chem Commun (Camb) 2008:55-7. [DOI: 10.1039/b714792a] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Lemmerer A, Bourne SA, Fernandes MA. Structural and melting point characterisation of six chiral ammonium naphthalene carboxylate salts. CrystEngComm 2008. [DOI: 10.1039/b810068c] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Zhang J, Gembicky M, Messerschmidt M, Coppens P. Hydrogen-bond quenching of photodecarbonylation in the solid state and recovery of reactivity by co-crystallization. Chem Commun (Camb) 2007:2399-401. [PMID: 17844759 DOI: 10.1039/b700073a] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Intermolecular H-bonding between C=O (ketone) and HO (4'-hydroxyphenyl) quenches photodecarbonylation of 2,2,4,4-tetramethyl-1,3-di(4'-hydroxyphenyl)acetone 1 in the crystalline solid state, its reactivity is recovered by co-crystallization with the small organic molecule 4,4'-bicyclohexanone.
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Affiliation(s)
- Jing Zhang
- Department of Chemistry, State University of New York at Buffalo, Buffalo, New York 14260-3000, USA
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Ballabh A, Trivedi DR, Dastidar P. From Nonfunctional Lamellae to Functional Nanotubes. Org Lett 2006; 8:1271-4. [PMID: 16562869 DOI: 10.1021/ol053000i] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
[structure: see text] Long chain alkyl-alkyl interactions appears to be the main driving force in hydrogen bond isomerism induced transformation of lamellar architectures to nanotubular constructs in alkylammonium dicarboxylate salts; the syntheses of the nanotubes require no skill for typical organic synthesis, and they are functional materials displaying intriguing gelling properties.
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Affiliation(s)
- Amar Ballabh
- Analytical Science Discipline, Central Salt & Marine Chemicals Research Institute, G. B. Marg, Bhavnagar, 364 002, Gujarat, India
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Moorthy JN, Venkatakrishnan P, Savitha G, Weiss RG. Cis → trans and trans → cis isomerizations of styrylcoumarins in the solid state. Importance of the location of free volume in crystal lattices. Photochem Photobiol Sci 2006; 5:903-13. [PMID: 17019468 DOI: 10.1039/b606027g] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have examined the photobehavior of a set of isomers of 2-pyranone-annulated stilbenes (6-styrylcoumarin 1, 7-styrylcoumarin 2, 4-methyl-6-styrylcoumarin 3, and 4-methyl-7-styrylcoumarin, 4) in their crystalline phases. While the cis isomers of 1-3 undergo cis-->trans photoisomerizations in the solid state, cis-4 and the trans isomers of 1-3 do not; the trans isomer of 4 undergoes photo-induced intermolecular reactions. Solution-state irradiations of the trans isomers of 1-4 lead to the cis isomers quite readily, as does cis-4 lead to trans-4, which suggests that the absence of geometric isomerization of the trans isomers and the lack of reactivity of cis-4 in the solid state are due to molecular packing effects. X-Ray crystal structural analyses of 1-4 reveal interesting conformational preferences for the styrenic moieties and differences in the total 'free' volumes within the lattices, but neither factor explains satisfactorily why some of the molecules undergo geometric isomerizations in their single crystals and others do not. Using the PLATON program, we have located the sizes and positions of 'void volumes' within the crystal lattices, and identified trajectories necessary for atomic motions to lead to geometric isomerizations to understand the reactivities of 1-4. The voids in the reactive cis isomers of 1-3 crystals are located along the trajectories needed for geometric isomerization. The relevant voids in the crystals of cis-4 and the trans isomers of 1 and 2 (the non-isomerizing molecules for which suitable crystals could be grown for X-ray analyses) are located along a trajectory that does not permit isomerization. We hypothesize that the classical momentum gained from the initial motions that are facilitated due to the voids in the crystals of the cis isomers of 1-3, as well as the heat dissipated to the local environment by internal conversions and vibronic cascade of the Franck-Condon states, helps to drive the system over potential energy barriers that would not be possible otherwise. Cis-4 and the trans isomers of 1 and 2, as well as other examples from the literature in which geometric isomerizations do or do not occur in the solid state, also follow the predictions based upon the PLATON analyses. On these bases, it is suggested that the methodology described may be generally applicable for predicting when geometric isomerizations (and possibly other reactive processes) in crystalline materials will occur.
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Sada K, Inoue K, Tanaka T, Epergyes A, Tanaka A, Tohnai N, Matsumoto A, Miyata M. Multicomponent Organic Alloys Based on Organic Layered Crystals. Angew Chem Int Ed Engl 2005; 44:7059-62. [PMID: 16222649 DOI: 10.1002/anie.200501678] [Citation(s) in RCA: 54] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Kazuki Sada
- Department of Chemistry & Biochemistry, Graduate School of Engineering, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka 819-0395, Japan.
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Sada K, Inoue K, Tanaka T, Epergyes A, Tanaka A, Tohnai N, Matsumoto A, Miyata M. Multicomponent Organic Alloys Based on Organic Layered Crystals. Angew Chem Int Ed Engl 2005. [DOI: 10.1002/ange.200501678] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Elemans JAAW, Slangen RRJ, Rowan AE, Nolte RJM. Synthesis and hierarchical self-assembly of cavity-containing facial amphiphiles. J Org Chem 2004; 68:9040-9. [PMID: 14604379 DOI: 10.1021/jo035130f] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The synthesis and aggregation behavior of cavity-containing facial amphiphiles is described. The molecules consist of a glycoluril-based rigid cavity functionalized with two water-soluble benzoate groups. By specific molecular recognition processes in water, the amphiphilic hosts self-assemble in a hierarchical process to form arrays of molecules. Depending on the counterions, these arrays can be assembled into well-defined aggregates of mesoscopic size. The size and shape of the aggregates can be tuned by variations in the size and substitution pattern of the cavities of the host molecules.
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Affiliation(s)
- Johannes A A W Elemans
- Department of Organic Chemistry, NSRIM institute, University of Nijmegen, Toernooiveld, 6525 ED Nijmegen, The Netherlands.
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Sada K, Inoue K, Tanaka T, Tanaka A, Epergyes A, Nagahama S, Matsumoto A, Miyata M. Organic Layered Crystals with Adjustable Interlayer Distances of 1-Naphthylmethylammoniumn-Alkanoates and Isomerism of Hydrogen-Bond Networks by Steric Dimension. J Am Chem Soc 2004; 126:1764-71. [PMID: 14871108 DOI: 10.1021/ja038379n] [Citation(s) in RCA: 60] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A series of 1-naphthylmethylammonium n-alkanoates from acetate to triacontanoate produce isomorphic layered structures in the crystalline state. The interlayer distances, d-spacings, are proportional to the lengths of the alkyl chains. This is attributed to synergic intermolecular interactions; pi-pi and CH-pi interactions of the naphthalene rings between the cations, hydrophobic interactions of the alkyl chains, and two-dimensional hydrogen-bond networks between the primary ammonium cations and the carboxylate anions. Salts made from carboxylic acids wider than 5.5 A in the cross sections produce another columnar structure with a one-dimensional ladder-type hydrogen-bond network. Steric parameters of the acid components provide an explanation for the isomerism of the hydrogen-bond network.
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Affiliation(s)
- Kazuki Sada
- Department of Chemistry and Biochemistry, Graduate School of Engineering, Kyushu University, 6-10-1 Hakozaki, Higashi-ku, Fukuoka 812-8581, Japan.
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Kinbara K, Katsumata Y, Saigo K. Chiral discrimination of 2-arylalkanoic acids by (1S,2S)-1-aminoindan-2-ol and (1S,2S)-2-aminoindan-1-ol: Correlation of the relative configuration of the amino and hydroxy groups with the pattern of a supramolecular hydrogen-bond network in the less-soluble diastereomeric salt. Chirality 2003. [DOI: 10.1002/chir.10202] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
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Hénin F, Létinois S, Muzart J. Asymmetric photodeconjugation of ammonium ene-carboxylates: temperature effects and evidence for the α-carbon of the dienolic species as a latent trigonal centre. ACTA ACUST UNITED AC 2000. [DOI: 10.1016/s0957-4166(00)00151-8] [Citation(s) in RCA: 22] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Salts of N,N′-Oxalylbis(phenylglycine)s and 1-Phenylethylamines: Structural Variation of Layered Materials Induced by Stereochemistry. Tetrahedron 2000. [DOI: 10.1016/s0040-4020(99)01059-5] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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Akazome M, Takahashi T, Ogura K. Crystal structure of alkylammonium salts of N,N′-oxalylbis(phenylglycine)s: Optional construction of a monolayer or bilayer structure. Tetrahedron Lett 1998. [DOI: 10.1016/s0040-4039(98)00916-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Kinbara K, Hashimoto Y, Sukegawa M, Nohira H, Saigo K. Crystal Structures of the Salts of Chiral Primary Amines with Achiral Carboxylic Acids: Recognition of the Commonly-Occurring Supramolecular Assemblies of Hydrogen-Bond Networks and Their Role in the Formation of Conglomerates. J Am Chem Soc 1996. [DOI: 10.1021/ja9539960] [Citation(s) in RCA: 169] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Kazushi Kinbara
- Contribution from the Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113, Japan, and Department of Applied Chemistry, Faculty of Engineering, Saitama University, Shimo-ohkubo, Urawa, Saitama 338, Japan
| | - Yukihiko Hashimoto
- Contribution from the Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113, Japan, and Department of Applied Chemistry, Faculty of Engineering, Saitama University, Shimo-ohkubo, Urawa, Saitama 338, Japan
| | - Makoto Sukegawa
- Contribution from the Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113, Japan, and Department of Applied Chemistry, Faculty of Engineering, Saitama University, Shimo-ohkubo, Urawa, Saitama 338, Japan
| | - Hiroyuki Nohira
- Contribution from the Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113, Japan, and Department of Applied Chemistry, Faculty of Engineering, Saitama University, Shimo-ohkubo, Urawa, Saitama 338, Japan
| | - Kazuhiko Saigo
- Contribution from the Department of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Hongo, Bunkyo-ku, Tokyo 113, Japan, and Department of Applied Chemistry, Faculty of Engineering, Saitama University, Shimo-ohkubo, Urawa, Saitama 338, Japan
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