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Samigullin T, Logacheva M, Terentieva E, Degtjareva G, Pimenov M, Valiejo-Roman C. Plastid Phylogenomic Analysis of Tordylieae Tribe (Apiaceae, Apioideae). PLANTS (BASEL, SWITZERLAND) 2022; 11:709. [PMID: 35270181 PMCID: PMC8912408 DOI: 10.3390/plants11050709] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/30/2021] [Revised: 02/28/2022] [Accepted: 03/01/2022] [Indexed: 11/16/2022]
Abstract
Based on the nrDNA ITS sequence data, the Tordylieae tribe is recognized as monophyletic with three major lineages: the subtribe Tordyliinae, the Cymbocarpum clade, and the Lefebvrea clade. Recent phylogenomic investigations showed incongruence between the nuclear and plastid genome evolution in the tribe. To assess phylogenetic relations and structure evolution of plastomes in Tordylieae, we generated eleven complete plastome sequences using the genome skimming approach and compared them with the available data from this tribe and close relatives. Newly assembled plastomes had lengths ranging from 141,148 to 150,103 base pairs and contained 122-127 genes, including 79-82 protein-coding genes, 35-37 tRNAs, and 8 rRNAs. We observed substantial differences in the inverted repeat length and gene content, accompanied by a complex picture of multiple JLA and JLB shifts. In concatenated phylogenetic analyses, Tordylieae plastomes formed at least three not closely related lineages with plastomes of the Lefebvrea clade as a sister group to plastomes from the Selineae tribe. The newly obtained data have increased our knowledge on the range of plastome variability in Apiaceae.
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Affiliation(s)
- Tahir Samigullin
- Department of Evolutionary Biochemistry, A. N. Belozersky Research Institute of Physicochemical Biology, Lomonosov Moscow State University, Leninskie Gory 1–40, 119992 Moscow, Russia; (M.L.); (C.V.-R.)
| | - Maria Logacheva
- Department of Evolutionary Biochemistry, A. N. Belozersky Research Institute of Physicochemical Biology, Lomonosov Moscow State University, Leninskie Gory 1–40, 119992 Moscow, Russia; (M.L.); (C.V.-R.)
- Center of Life Sciences, Skolkovo Institute of Science and Technology, Bolshoy Boulevard 30, Bld. 1, 121205 Moscow, Russia
| | - Elena Terentieva
- Botanical Garden, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119992 Moscow, Russia; (E.T.); (G.D.); (M.P.)
| | - Galina Degtjareva
- Botanical Garden, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119992 Moscow, Russia; (E.T.); (G.D.); (M.P.)
| | - Michael Pimenov
- Botanical Garden, Faculty of Biology, Lomonosov Moscow State University, Leninskie Gory 1/12, 119992 Moscow, Russia; (E.T.); (G.D.); (M.P.)
| | - Carmen Valiejo-Roman
- Department of Evolutionary Biochemistry, A. N. Belozersky Research Institute of Physicochemical Biology, Lomonosov Moscow State University, Leninskie Gory 1–40, 119992 Moscow, Russia; (M.L.); (C.V.-R.)
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