Thermal properties of knotted block copolymer rings with charged monomers subjected to short-range interactions

The thermal properties of coarse-grained knotted copolymer rings fluctuating in a highly screening solution are investigated on a simple cubic lattice using the Wang-Landau Monte Carlo algorithm. The rings contain two kinds of monomers A and B with opposite charges that are subjected to short-range interactions. In view of possible applications in medicine and the construction of intelligent materials, it is shown that the behavior of copolymer rings can be tuned by changing both their monomer configuration and topology. We find several phase transitions depending on the monomer distribution. They include the expansion and collapse of the knotted polymer as well as rearrangements leading to metastable states. The temperatures at which these phase transitions are occurring and other features can be tuned by changing the topology of the system. The processes underlying the observed transitions are identified. In knots formed by diblock copolymers, two different classes of behaviors are detected depending on whether there is an excess of monomers of one kind or not. Moreover, we find that the most stable compact states are formed by copolymers in which units of two A monomers are alternated by units of two B monomers. Remarkably, these compact states are in a lamellar phase. The transition from the lamellar to the expanded state produces in the specific heat capacity a narrow and high peak that is centered at temperatures that are much higher than those of the peaks observed in all other monomer distributions.

Specific heat and partition function zeros for the dimer model on the checkerboard B lattice: Finite-size effects

There are three possible classifications of the dimer weights on the bonds of the checkerboard lattice and they are denoted as checkerboard A, B, and C lattices [Phys. Rev. E 91, 062139 (2015)PLEEE81539-375510.1103/PhysRevE.91.062139]. The dimer model on the checkerboard B and C lattices has much richer critical behavior compared to the dimer model on the checkerboard A lattice. In this paper we study in full detail the dimer model on the checkerboard B lattice. The dimer model on the checkerboard B lattice has two types of critical behavior. In one limit this model is the anisotropic dimer model on rectangular lattice with algebraic decay of correlators and in another limit it is the anisotropic generalized Kasteleyn model with radically different critical behavior. We analyze the partition function of the dimer model on a 2M×2N checkerboard B lattice wrapped on a torus. We find very unusual behavior of the partition function zeros and the specific heat of the dimer model. Remarkably, the partition function zeros of finite-size systems can have very interesting structures, made of rings, concentric circles, radial line segments, or even arabesque structures. We find out that the number of the specific heat peaks and the number of circles of the partition function zeros increases with the system size. The lattice anisotropy of the model has strong effects on the behavior of the specific heat, dominating the relation between the correlation length exponent ν and the shift exponent λ, and λ is generally unequal to 1/ν (λ≠1/ν).

Physical mechanism for biopolymers to aggregate and maintain in non-equilibrium states

Many human or animal diseases are related to aggregation of proteins. A viable biological organism should maintain in non-equilibrium states. How protein aggregate and why biological organisms can maintain in non-equilibrium states are not well understood. As a first step to understand such complex systems problems, we consider simple model systems containing polymer chains and solvent particles. The strength of the spring to connect two neighboring monomers in a polymer chain is controlled by a parameter s with s → ∞ for rigid-bond. The strengths of bending and torsion angle dependent interactions are controlled by a parameter s A with s A  → -∞ corresponding to no bending and torsion angle dependent interactions. We find that for very small s A , polymer chains tend to aggregate spontaneously and the trend is independent of the strength of spring. For strong springs, the speed distribution of monomers in the parallel (along the direction of the spring to connect two neighboring monomers) and perpendicular directions have different effective temperatures and such systems are in non-equilibrium states.

Finite-size corrections and scaling for the dimer model on the checkerboard lattice

Lattice models are useful for understanding behaviors of interacting complex many-body systems. The lattice dimer model has been proposed to study the adsorption of diatomic molecules on a substrate. Here we analyze the partition function of the dimer model on a 2M×2N checkerboard lattice wrapped on a torus and derive the exact asymptotic expansion of the logarithm of the partition function. We find that the internal energy at the critical point is equal to zero. We also derive the exact finite-size corrections for the free energy, the internal energy, and the specific heat. Using the exact partition function and finite-size corrections for the dimer model on a finite checkerboard lattice, we obtain finite-size scaling functions for the free energy, the internal energy, and the specific heat of the dimer model. We investigate the properties of the specific heat near the critical point and find that the specific-heat pseudocritical point coincides with the critical point of the thermodynamic limit, which means that the specific-heat shift exponent λ is equal to ∞. We have also considered the limit N→∞ for which we obtain the expansion of the free energy for the dimer model on the infinitely long cylinder. From a finite-size analysis we have found that two conformal field theories with the central charges c=1 for the height function description and c=-2 for the construction using a mapping of spanning trees can be used to describe the dimer model on the checkerboard lattice.