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Ouchaoui AA, Hadad SEE, Aherkou M, Fadoua E, Mouad M, Ramli Y, Kettani A, Bourais I. Unlocking Benzosampangine's Potential: A Computational Approach to Investigating, Its Role as a PD-L1 Inhibitor in Tumor Immune Evasion via Molecular Docking, Dynamic Simulation, and ADMET Profiling. Bioinform Biol Insights 2024; 18:11779322241298591. [PMID: 39564188 PMCID: PMC11574905 DOI: 10.1177/11779322241298591] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Accepted: 10/21/2024] [Indexed: 11/21/2024] Open
Abstract
The interaction between programmed cell death protein 1 (PD-1) and its ligand PD-L1 plays a crucial role in tumor immune evasion, presenting a critical target for cancer immunotherapy. Despite being effective, current monoclonal antibodies present some drawbacks such as high costs, toxicity, and resistance development. Therefore, the development of small-molecule inhibitors is necessary, especially those derived from natural sources. In this study, benzosampangine is predicted as a promising PD-L1 inhibitor, with potential applications in cancer immunotherapy. Utilizing the high-resolution crystal structure of human PD-L1 (PDB ID: 5O45), we screened 511 natural compounds, identifying benzosampangine as a top candidate with exceptional inhibitory properties. Molecular docking predicted that benzosampangine exhibits a strong binding affinity for PD-L1 (-9.4 kcal/mol) compared with established controls such as CA-170 (-6.5 kcal/mol), BMS-202 (-8.6 kcal/mol), and pyrvinium (-8.9 kcal/mol). The compound's predicted binding efficacy is highlighted by robust interactions with key amino acids (ILE54, TYR56, GLN66, MET115, ILE116, SER117, ALA121, ASP122) within the active site, notably forming 3 Pi-sulfur interactions with MET115-an interaction absents in control inhibitors. In addition, ADMET profiling suggests that over the control molecules, benzosampangine has several key advantages, including favorable solubility, permeability, metabolic stability, and low toxicity, while adhering to Lipinski's rule of five. Molecular dynamic simulations predict the stability of the benzosampangine-PD-L1 complex, reinforcing its potential to sustain inhibition of the PD-1/PD-L1 pathway. MMGBSA analysis calculated a binding free energy (ΔGbind) of -39.39 kcal/mol for the benzosampangine-PD-L1 complex, with significant contributions from Coulombic, lipophilic, and Van der Waals interactions, validating the predicted docking results. This study investigates in silico benzosampangine, predicting its better molecular interactions and pharmacokinetic profile compared with several already known PD-L1 inhibitors.
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Affiliation(s)
- Abderrahim Ait Ouchaoui
- Mohammed VI University of Sciences and Health (UM6SS), Casablanca, Morocco
- Mohammed VI Center for Research and Innovation (CM6RI), Rabat, Morocco
| | - Salah Eddine El Hadad
- Mohammed VI University of Sciences and Health (UM6SS), Casablanca, Morocco
- Mohammed VI Center for Research and Innovation (CM6RI), Rabat, Morocco
| | - Marouane Aherkou
- Mohammed VI Center for Research and Innovation (CM6RI), Rabat, Morocco
- Biotechnology Laboratory (MedBiotech), Bioinova Research Center, Rabat Medical and Pharmacy School, Mohammed V University in Rabat, Rabat, Morocco
| | - Elkamili Fadoua
- Rabat Medical and Pharmacy School, Mohammed Vth University, Rabat, Morocco
| | - Mkamel Mouad
- Mohammed VI Center for Research and Innovation (CM6RI), Rabat, Morocco
| | - Youssef Ramli
- Laboratory of Medicinal Chemistry, Drug Sciences Research Center, Faculty of Medicine and Pharmacy, Mohammed V University in Rabat, Rabat, Morocco
| | - Anass Kettani
- Laboratory of Biology and Health, URAC 34, Faculty of Sciences Ben M'sik, Health and Biotechnology Research Center, Hassan II University of Casablanca, Casablanca, Morocco
| | - Ilhame Bourais
- Mohammed VI University of Sciences and Health (UM6SS), Casablanca, Morocco
- Mohammed VI Center for Research and Innovation (CM6RI), Rabat, Morocco
- Laboratory of Human Pathologies Biology, Department of Biology, Faculty of Sciences, Mohammed V University in Rabat, Rabat, Morocco
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Catros V. Les CAR-T cells, des cellules tueuses spécifiques d’antigènes tumoraux. Med Sci (Paris) 2019; 35:316-326. [DOI: 10.1051/medsci/2019067] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Les lymphocytes T présentent des fonctions lytiques puissantes et leur adressage spécifique aux cellules tumorales afin de les détruire est un enjeu majeur. Leur ingénierie par transfert d’une construction génétique codant un fragment d’anticorps spécifique de la molécule CD19, exprimée par les lymphocytes B, fusionné à une unité de transduction d’un signal T a conduit à des résultats cliniques importants dans des formes avancées de lymphomes. Ces lymphocytes T modifiés, appelés CAR-T cells, ou plus simplement CAR pour chimeric antigen receptor, ont reçu une approbation par la Food and drug administration américaine en 2017 pour les deux premiers médicaments de thérapie cellulaire : le Kymriah™ et le Yescarta™. Ces CAR, conçus pour le traitement d’hémopathies malignes, permettent d’envisager la construction d’autres CAR dirigés, eux, contre des tumeurs solides. De nouvelles générations de CAR visent à mieux contrôler leur prolifération et à améliorer leurs fonctions in vivo grâce à la mise en place de mécanismes d’inactivation inductibles. Le développement des multi-CAR, des CAR spécifiques de plusieurs cibles, et leur combinaison aux inhibiteurs de points de contrôle immunitaires ouvrent une nouvelle ère pour l’immunothérapie des tumeurs.
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Aboura C, Touaoula TM, Aribi M. The pulse vaccination effects in mammary carcinoma. INT J BIOMATH 2017. [DOI: 10.1142/s179352451750036x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
Abstract
Induction of antitumor immunity by vaccination is one of the major current immunotherapy strategies. We present a mathematical model of the competition between immune cells and mammary carcinogenesis under the effect of Triplex vaccine. The model describes both humoral and cell-mediated immune responses against cancer cells. The control of the cancer cells growth occurs through the application of the pulse vaccination. Here we determine the relationship between the strength of the vaccine and the time required to eradicate cancer cells, and we present some simulations to illustrate our theoretical results, namely, the total cancer cells depletion, which is influenced by competition occurs among the immune and cancer cells.
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Affiliation(s)
- Chahinez Aboura
- Laboratoire d’Analyse Non Linéaire et Mathématiques Appliquées, University of Abou Bekr Belkaïd, Tlemcen 13000, Algeria
- Department of Mathematics, University of Abou Bekr Belkaïd, Tlemcen 13000, Algeria
| | - Tarik Mohamed Touaoula
- Laboratoire d’Analyse Non Linéaire et Mathématiques Appliquées, University of Abou Bekr Belkaïd, Tlemcen 13000, Algeria
- Department of Mathematics, University of Abou Bekr Belkaïd, Tlemcen 13000, Algeria
| | - Mourad Aribi
- Department of Biology and Immunology, University of Abou Bekr Belkaïd, Tlemcen 13000, Algeria
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Catros V, Dessarthe B, Thedrez A, Toutirais O. [Nectins and nectin-like receptors DNAM-1 and CRTAM: new ways for tumor escape]. Med Sci (Paris) 2014; 30:537-43. [PMID: 24939541 DOI: 10.1051/medsci/20143005017] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
Abstract
Nectin and nectin-like (Necl) are cell adhesion molecules expressed in various tumors. They were alternatively reported as involved in tumor suppressor or oncogenic functions that led to their use as histological or serological cancer markers. Gene inactivation in lung carcinoma but overexpression in leukemia were reported for Necl-2. DNAM-1 and CRTAM are emerging NK receptors of immune cells that were described to interact with nectin and Necl. DNAM-1, constitutively expressed by CD8(+) T cells, NK or γδ T lymphocytes, is a ligand of Necl-5. It participates to tumor immunosurveillance promoting Necl-5 expressing tumor cell lysis. CRTAM, only expressed after lymphocyte activation, is a ligand of Necl-2. Engagement of CRTAM with Necl-2 has opposite effects depending on the type of lymphocyte. For NK or CD8(+) T cells, it promotes cytotoxicity and IFNγ secretion favoring immunosurveillance. By contrast, CRTAM/Necl-2 interaction triggers cell death of activated TVg9Vd2 γδ T cells favoring immune escape. Nectin and Necl-mediated interactions appear to be crucial for the delicate balance between tumor escape and antitumor response.
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Affiliation(s)
- Véronique Catros
- Inserm UMR U991, Foie, Métabolismes et Cancer, 35033 Rennes, France - Site biologie cellulaire du CRB (centre de ressources biologiques) santé de Rennes, centre hospitalier universitaire de Rennes, 35033 Rennes, France
| | - Benoit Dessarthe
- Inserm UMR U991, Foie, Métabolismes et Cancer, 35033 Rennes, France
| | - Aurélie Thedrez
- Inserm UMR U991, Foie, Métabolismes et Cancer, 35033 Rennes, France
| | - Olivier Toutirais
- Inserm U919, GIP (groupe d'intérêt public) Cyceron, université de Caen Basse-Normandie, 14074 Caen, France
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