Genomic polymorphism in Uruguayan Creole cattle using RAPD and microsatellite markers

Zoometric Characterization of Creole Cows from the Southern Amazon Region of Peru

Bovine breeding began in Peru more than five centuries ago; since then, adaptation has started. Nowadays, Creole cattle are part of economic activities of Peruvian farmers, as they supply food and profits, among other things, for families in Andean region. Creole cattle have many strengths such as resistance to diseases, low nutrient requirements and easy adaptation to different levels of altitude and environmental conditions. However, even with all these attributes, they are not valued within production systems. Moreover, these valuable genetic resources are disappearing gradually in Perú. For this reason, this study aims to characterize the zoometry of Creole cows from the Southern Amazonas region of Peru. Biotype classification was performed by hierarchical cluster and multivariate factors analysis. Qualitative traits were analyzed with descriptive statistics and Duncan’s test (α = 0.05) was used to compare means among groups. Associations between qualitative traits were determined with Chi-square. We distinguished three biotypes of Creole cows with characteristics for meat and milk production. This information is helpful for future conservation programs for Creole cattle.

The complete mitochondrial genome of Uruguayan native cattle (Bos taurus)

Uruguayan beef is one of the most popular products in the export market. In this study, we report the complete mitochondrial genome sequence of Uruguayan native cattle for the first time. The total mitochondrial genome sequence is 16,339 bp in length with the base composition of 33.4% for A, 27.2% for T, 26.0% for C, and 13.4% for G. The description of all genes is similar to the typical mitochondrial genomes of cattle. The annotated mitochondrial genome of Uruguayan native cattle would serve as an important genetic data set for further study.

Evaluation of reproductive performance and genetic variation in bulls of the Polish White-Backed breed

The aim of the study was to evaluate genetic variation, reproductive performance and the degree of relationship of White-Backed bulls entered in the breed registry and approved for breeding. The study included 32 bulls of the White-Backed (WB) breed with an entry in the breed registry and used for breeding in the years 2003-2015. Eleven microsatellite DNA sequences (TGLA222, BM2113, TGLA53, ETH10, SPS115, TGLA126, TGLA122, INRA23, ETH3, ETH225 and BM1824) were used to analyse variation in the WB bulls. The bulls most often used for breeding were Chilon (1,073 doses), Mak (939 doses) and Jaguar (858 doses). The bulls Mak, Chilon and Jak had the greatest influence on the active population of White-Backed cattle, with the most daughters. In the analysed population of White-Backed bulls, a total of 79 different alleles were identified, with a mean 7.27 per locus. The analysed pool of microsatellite loci was characterized by high values for PIC, H_O and H_E (>0.6), and the entire population was in genetic equilibrium. The estimated level of inbreeding within the population ranged from -0.2277 (ETH225) to 0.0775 (SPS115), with a mean value of -0.0587.

Genetic diversity analysis of the Uruguayan Creole cattle breed using microsatellites and mtDNA markers

The Uruguayan Creole cattle population (N = 600) is located in a native habitat in south-east Uruguay. We analyzed its genetic diversity and compared it to other populations of American Creole cattle. A random sample of 64 animals was genotyped for a set of 17 microsatellite loci, and the D-loop hyper-variable region of mtDNA was sequenced for 28 calves of the same generation. We identified an average of 5.59 alleles per locus, with expected heterozygosities between 0.466 and 0.850 and an expected mean heterozygosity of 0.664. The polymorphic information content ranged from 0.360 to 0.820, and the global FIS index was 0.037. The D-loop analysis revealed three haplotypes (UY1, UY2 and UY3), belonging to the European matriline group, with a haplotype diversity of 0.532. The history of the population, changes in the effective population size, bottlenecks, and genetic drift are possible causes of the genetic variability patterns that we detected.

Molecular approach of the fragile chromosomal region Xq31-34 in cattle (Bos taurus) by microdissection and DOP-PCR

Fragile sites (FS) are chromosomal regions where the normal compactation of chromatine is not observed. FRAXA (Fra Xq27.3, X sexual chromosome) is one of the most studied FS in humans. FRAXA is an expansion of the trinucleotide CGG located in the gene FMR-1. In cattle, sites of chromosomal fragility were reported in BTAX, associated with different pathologies and fertility impairment. Chromosomal microdissection has became a valuable tool for isolating chromatine fragments. In this work, it was combined the chromosomal microdissection technique with DOP-PCR in order to carry out a molecular analysis of the fragile chromosomal region BTAXq31-34. In that region, polymorphic DNA-RAPD sequences (GC rich) are present and sequences of the gene FMR-1 are missing. The results showed the usefulness of the microdissection-DOP-PCR technique for molecular characterization of fragile chromosomal sites in cattle.

Genetic diversity of local geese of varying productivity and feather color in Kars

The local geese in the transition region between the Caucasus Mountains and Anatolia have economically significant differences in productivity and are identified by four feather colors, white, black, piebald, and yellow. This study was undertaken to determine the genetic structure, evolutionary relationships, and genetic diversity among these birds. DNA samples were obtained from 100 animals, and 50 random primers were screened. Genetic relationships were determined by random amplified polymorphic DNA polymorphisms obtained from a total of 48 loci, showing 40 bands (83.33%) that were polymorphic among all the populations investigated. A dendrogram constructed for this study revealed a close relationship between the white and the black birds. Additionally, the piebald birds showed close similarity to white and black geese, and the yellow birds displayed a clear distance from the other three populations.