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Ali S, Ghatwary N, Jha D, Isik-Polat E, Polat G, Yang C, Li W, Galdran A, Ballester MÁG, Thambawita V, Hicks S, Poudel S, Lee SW, Jin Z, Gan T, Yu C, Yan J, Yeo D, Lee H, Tomar NK, Haithami M, Ahmed A, Riegler MA, Daul C, Halvorsen P, Rittscher J, Salem OE, Lamarque D, Cannizzaro R, Realdon S, de Lange T, East JE. Assessing generalisability of deep learning-based polyp detection and segmentation methods through a computer vision challenge. Sci Rep 2024; 14:2032. [PMID: 38263232 PMCID: PMC10805888 DOI: 10.1038/s41598-024-52063-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Accepted: 01/12/2024] [Indexed: 01/25/2024] Open
Abstract
Polyps are well-known cancer precursors identified by colonoscopy. However, variability in their size, appearance, and location makes the detection of polyps challenging. Moreover, colonoscopy surveillance and removal of polyps are highly operator-dependent procedures and occur in a highly complex organ topology. There exists a high missed detection rate and incomplete removal of colonic polyps. To assist in clinical procedures and reduce missed rates, automated methods for detecting and segmenting polyps using machine learning have been achieved in past years. However, the major drawback in most of these methods is their ability to generalise to out-of-sample unseen datasets from different centres, populations, modalities, and acquisition systems. To test this hypothesis rigorously, we, together with expert gastroenterologists, curated a multi-centre and multi-population dataset acquired from six different colonoscopy systems and challenged the computational expert teams to develop robust automated detection and segmentation methods in a crowd-sourcing Endoscopic computer vision challenge. This work put forward rigorous generalisability tests and assesses the usability of devised deep learning methods in dynamic and actual clinical colonoscopy procedures. We analyse the results of four top performing teams for the detection task and five top performing teams for the segmentation task. Our analyses demonstrate that the top-ranking teams concentrated mainly on accuracy over the real-time performance required for clinical applicability. We further dissect the devised methods and provide an experiment-based hypothesis that reveals the need for improved generalisability to tackle diversity present in multi-centre datasets and routine clinical procedures.
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Affiliation(s)
- Sharib Ali
- School of Computing, Faculty of Engineering and Physical Sciences, University of Leeds, Leeds, LS2 9JT, UK.
- Department of Engineering Science, Institute of Biomedical Engineering, University of Oxford, Oxford, OX3 7DQ, UK.
- Oxford National Institute for Health Research Biomedical Research Centre, Oxford, OX4 2PG, UK.
| | - Noha Ghatwary
- Computer Engineering Department, Arab Academy for Science and Technology, Smart Village, Giza, Egypt
| | - Debesh Jha
- SimulaMet, 0167, Oslo, Norway
- Department of Computer Science, UiT The Arctic University of Norway, Hansine Hansens veg 18, 9019, Tromsø, Norway
| | - Ece Isik-Polat
- Graduate School of Informatics, Middle East Technical University, 06800, Ankara, Turkey
| | - Gorkem Polat
- Graduate School of Informatics, Middle East Technical University, 06800, Ankara, Turkey
| | - Chen Yang
- City University of Hong Kong, Kowloon, Hong Kong
| | - Wuyang Li
- City University of Hong Kong, Kowloon, Hong Kong
| | - Adrian Galdran
- BCN MedTech, Department of Information and Communication Technologies, Universitat Pompeu Fabra, 08018, Barcelona, Spain
| | - Miguel-Ángel González Ballester
- BCN MedTech, Department of Information and Communication Technologies, Universitat Pompeu Fabra, 08018, Barcelona, Spain
- ICREA, Barcelona, Spain
| | | | | | - Sahadev Poudel
- Department of IT Convergence Engineering, Gachon University, Seongnam, 13120, Republic of Korea
| | - Sang-Woong Lee
- Department of IT Convergence Engineering, Gachon University, Seongnam, 13120, Republic of Korea
| | - Ziyi Jin
- College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, 310027, China
| | - Tianyuan Gan
- College of Biomedical Engineering and Instrument Science, Zhejiang University, Hangzhou, 310027, China
| | - ChengHui Yu
- Tsinghua Shenzhen International Graduate School, Tsinghua University, Shenzhen, 518055, China
| | - JiangPeng Yan
- Department of Automation, Tsinghua University, Beijing, 100084, China
| | - Doyeob Yeo
- Smart Sensing and Diagnosis Research Division, Korea Atomic Energy Research Institute, Taejon, 34057, Republic of Korea
| | - Hyunseok Lee
- Daegu-Gyeongbuk Medical Innovation Foundation, Medical Device Development Center, Taegu, 427724, Republic of Korea
| | - Nikhil Kumar Tomar
- NepAL Applied Mathematics and Informatics Institute for Research (NAAMII), Kathmandu, Nepal
| | - Mahmood Haithami
- Computer Science Department, University of Nottingham, Malaysia Campus, 43500, Semenyih, Malaysia
| | - Amr Ahmed
- Computer Science, Edge Hill University, Lancashire, United Kingdom
| | - Michael A Riegler
- SimulaMet, 0167, Oslo, Norway
- Department of Computer Science, UiT The Arctic University of Norway, Hansine Hansens veg 18, 9019, Tromsø, Norway
| | - Christian Daul
- CRAN UMR 7039, Université de Lorraine and CNRS, 54500, Vandœuvre-Lès-Nancy, France
| | - Pål Halvorsen
- SimulaMet, 0167, Oslo, Norway
- Oslo Metropolitan University, Pilestredet 46, 0167, Oslo, Norway
| | - Jens Rittscher
- Department of Engineering Science, Institute of Biomedical Engineering, University of Oxford, Oxford, OX3 7DQ, UK
| | - Osama E Salem
- Faculty of Medicine, University of Alexandria, Alexandria, 21131, Egypt
| | - Dominique Lamarque
- Université de Versailles St-Quentin en Yvelines, Hôpital Ambroise Paré, 9 Av. Charles de Gaulle, 92100, Boulogne-Billancourt, France
| | - Renato Cannizzaro
- CRO Centro Riferimento Oncologico IRCCS Aviano Italy, Via Franco Gallini, 2, 33081, Aviano, PN, Italy
| | - Stefano Realdon
- CRO Centro Riferimento Oncologico IRCCS Aviano Italy, Via Franco Gallini, 2, 33081, Aviano, PN, Italy
- Veneto Institute of Oncology IOV-IRCCS, Via Gattamelata, 64, 35128, Padua, Italy
| | - Thomas de Lange
- Medical Department, Sahlgrenska University Hospital-Mölndal, Blå stråket 5, 413 45, Göteborg, Sweden
- Department of Molecular and Clinical Medicine, Sahlgrenska Academy, University of Gothenburg, 41345, Göteborg, Sweden
- Augere Medical, Nedre Vaskegang 6, Oslo, 0186, Norway
| | - James E East
- Oxford National Institute for Health Research Biomedical Research Centre, Oxford, OX4 2PG, UK
- Translational Gastroenterology Unit, Nuffield Department of Medicine, Experimental Medicine Division, John Radcliffe Hospital, University of Oxford, Oxford, OX3 9DU, UK
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Baumer S, Streicher K, Alqahtani SA, Brookman-Amissah D, Brunner M, Federle C, Muehlenberg K, Pfeifer L, Salzberger A, Schorr W, Zustin J, Pech O. Accuracy of polyp characterization by artificial intelligence and endoscopists: a prospective, non-randomized study in a tertiary endoscopy center. Endosc Int Open 2023; 11:E818-E828. [PMID: 37727511 PMCID: PMC10506867 DOI: 10.1055/a-2096-2960] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/17/2023] [Accepted: 05/08/2023] [Indexed: 09/21/2023] Open
Abstract
Background and study aims Artificial intelligence (AI) in gastrointestinal endoscopy is developing very fast. Computer-aided detection of polyps and computer-aided diagnosis (CADx) for polyp characterization are available now. This study was performed to evaluate the diagnostic performance of a new commercially available CADx system in clinical practice. Patients and methods This prospective, non-randomized study was performed at a tertiary academic endoscopy center from March to August 2022. We included patients receiving a colonoscopy. Polypectomy had to be performed in all polyps. Every patient was examined concurrently by an endoscopist and AI using two opposing screens. The AI system, overseen by a second observer, was not visible to the endoscopist. The primary outcome was accuracy of the AI classifying the polyps into "neoplastic" and "non-neoplastic." The secondary outcome was accuracy of the classification by the endoscopists. Sessile serrated lesions were classified as neoplastic. Results We included 156 patients (mean age 65; 57 women) with 262 polyps ≤10 mm. Eighty-four were hyperplastic polyps (32.1%), 158 adenomas (60.3%), seven sessile serrated lesions (2.7%) and 13 other entities (normal/inflammatory colonmucosa, lymphoidic polyp) (4.9%) on histological diagnosis. Sensitivity, specificity and accuracy of AI were 89.70% (95% confidence interval [CI]: 84.02%-93.88%), 75.26% (95% CI: 65.46%-83.46%) and 84.35% (95% CI:79.38%-88.53%), respectively. Sensitivity, specificity and accuracy for less experienced endoscopists (2-5 years of endoscopy) were 95.56% (95% CI: 84.85%-99.46%), 61.54% (95% CI: 40.57%-79.77%) and 83.10% (95% CI: 72.34%-90.95%) and for experienced endoscopists 90.83% (95% CI: 84.19%-95.33%), 71.83% (95% CI: 59.90%-81.87%) and 83.77% (95% CI: 77.76%-88.70%), respectively. Conclusion Accuracy for polyp characterization by a new commercially available AI system is high, but does not fulfill the criteria for a "resect-and-discard" strategy.
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Affiliation(s)
- Sebastian Baumer
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
| | - Kilian Streicher
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
| | - Saleh A. Alqahtani
- Department of Gastroenterology and Hepatology, Johns Hopkins Hospital, Baltimore, United States
- Liver Transplant Center, King Faisal Specialist Hospital and Research Center, Riyadh, Saudi Arabia
| | - Dominic Brookman-Amissah
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
| | - Monika Brunner
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
| | - Christoph Federle
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
| | - Klaus Muehlenberg
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
| | - Lukas Pfeifer
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
| | - Andrea Salzberger
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
| | - Wolfgang Schorr
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
| | - Jozef Zustin
- Private Practice, Histopathology Service Private Practice, Regensburg, Germany
- Gerhard-Domagk-Institute of Pathology, Universitätsklinikum Münster, Munster, Germany
| | - Oliver Pech
- Department of Gastroenterology and Interventional Endoscopy, Krankenhaus Barmherzige Brüder Regensburg, Regensburg, Germany
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van Bokhorst QNE, Houwen BBSL, Hazewinkel Y, Fockens P, Dekker E. Advances in artificial intelligence and computer science for computer-aided diagnosis of colorectal polyps: current status. Endosc Int Open 2023; 11:E752-E767. [PMID: 37593158 PMCID: PMC10431975 DOI: 10.1055/a-2098-1999] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Accepted: 05/08/2023] [Indexed: 08/19/2023] Open
Affiliation(s)
- Querijn N E van Bokhorst
- Department of Gastroenterology and Hepatology, Amsterdam University Medical Centers, location Academic Medical Center, Amsterdam, the Netherlands
- Amsterdam Gastroenterology Endocrinology Metabolism, Amsterdam, the Netherlands
| | - Britt B S L Houwen
- Department of Gastroenterology and Hepatology, Amsterdam University Medical Centers, location Academic Medical Center, Amsterdam, the Netherlands
- Amsterdam Gastroenterology Endocrinology Metabolism, Amsterdam, the Netherlands
| | - Yark Hazewinkel
- Department of Gastroenterology and Hepatology, Tergooi Medical Center, Hilversum, the Netherlands
| | - Paul Fockens
- Department of Gastroenterology and Hepatology, Amsterdam University Medical Centers, location Academic Medical Center, Amsterdam, the Netherlands
- Amsterdam Gastroenterology Endocrinology Metabolism, Amsterdam, the Netherlands
| | - Evelien Dekker
- Department of Gastroenterology and Hepatology, Amsterdam University Medical Centers, location Academic Medical Center, Amsterdam, the Netherlands
- Amsterdam Gastroenterology Endocrinology Metabolism, Amsterdam, the Netherlands
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