1
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Christensen EG, Steele RP. Probing the Partial Activation of Water by Open-Shell Interactions, Cl(H 2O) 1-4. J Phys Chem A 2019; 123:8657-8673. [PMID: 31513400 DOI: 10.1021/acs.jpca.9b07235] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The partial chemical activation of water by reactive radicals was examined computationally for small clusters of chlorine and water, Cl•(H2O)n=1-4. Using an automated isomer-search procedure, dozens of unique, stable structures were computed. Among the resulting structural classes were intact, hydrated-chlorine isomers, as well as hydrogen-abstracted (HCl)(OH)(H2O)n-1 configurations. The latter showed increased stability as the degree of hydration increased, until n = 4, where a new class of structures was discovered with a chloride ion bound to an oxidized water network. The electronic structure of these three structural classes was investigated, and spectral signatures of this hydration-based evolution were connected to these electronic properties. An ancillary outcome of this detailed computational analysis, including coupled-cluster benchmarks, was the calibration of cost-effective quantum chemistry methods for future studies of these radical-water complexes.
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Affiliation(s)
- Elizabeth G Christensen
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry , University of Utah , 315 South 1400 East , Salt Lake City , Utah 84112 , United States
| | - Ryan P Steele
- Department of Chemistry and Henry Eyring Center for Theoretical Chemistry , University of Utah , 315 South 1400 East , Salt Lake City , Utah 84112 , United States
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2
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Dupuis R, Benoit M, Tuckerman ME, Méheut M. Importance of a Fully Anharmonic Treatment of Equilibrium Isotope Fractionation Properties of Dissolved Ionic Species As Evidenced by Li +(aq). Acc Chem Res 2017. [PMID: 28644616 DOI: 10.1021/acs.accounts.6b00607] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Equilibrium fractionation of stable isotopes is critically important in fields ranging from chemistry, including medicinal chemistry, electrochemistry, geochemistry, and nuclear chemistry, to environmental science. The dearth of reliable estimates of equilibrium fractionation factors, from experiment or from natural observations, has created a need for accurate computational approaches. Because isotope fractionation is a purely quantum mechanical phenomenon, exact calculation of fractionation factors is nontrivial. Consequently, a severe approximation is often made, in which it is assumed that the system can be decomposed into a set of independent harmonic oscillators. Reliance on this often crude approximation is one of the primary reasons that theoretical prediction of isotope fractionation has lagged behind experiment. A class of problems for which one might expect the harmonic approximation to perform most poorly is the isotopic fractionation between solid and solution phases. In order to illustrate the errors associated with the harmonic approximation, we have considered the fractionation of Li isotopes between aqueous solution and phyllosilicate minerals, where we find that the harmonic approximation overestimates isotope fractionation factors by as much as 30% at 25 °C. Lithium is a particularly interesting species to examine, as natural lithium isotope signatures provide information about hydrothermal processes, carbon cycle, and regulation of the Earth's climate by continental alteration. Further, separation of lithium isotopes is of growing interest in the nuclear industry due to a need for pure 6Li and 7Li isotopes. Moving beyond the harmonic approximation entails performing exact quantum calculations, which can be achieved using the Feynman path integral formulation of quantum statistical mechanics. In the path integral approach, a system of quantum particles is represented as a set of classical-like ring-polymer chains, whose interparticle interactions are determined by the rules of quantum mechanics. Because a classical isomorphism exists between the true quantum system and the system of ring-polymers, classical-like methods can be applied. Recent developments of efficient path integral approaches for the exact calculation of isotope fractionation now allow the case of the aforementioned dissolved Li fractionation properties to be studied in detail. Applying this technique, we find that the calculations yield results that are in good agreement with both experimental data and natural observations. Importantly, path integral methods, being fully atomistic, allow us to identify the origins of anharmonic effects and to make reliable predictions at temperatures that are experimentally inaccessible yet are, nevertheless, relevant for natural phenomena.
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Affiliation(s)
- Romain Dupuis
- DIPC, Paseo Manuel de Lardizabal, 4, 20018 San Sebastiàn, Spain
| | - Magali Benoit
- CEMES CNRS UPR8011, 29 rue Jeanne Marvig, 31055 Cedex Toulouse, France
| | - Mark E. Tuckerman
- Department of Chemistry, New York University, New York, New York 10003, United States
- Courant Institute of Mathematical Sciences, New York University, New York, New York 10012, United States
- NYU-ECNU Center for Computational Chemistry at NYU Shanghai, Shanghai 200062, China
| | - Merlin Méheut
- GET, CNRS UMR 5563, IRD UR 154, Université Toulouse III, OMP, 14 avenue Edouard Belin, 31400 Toulouse, France
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3
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Paesani F. Temperature-Dependent Infrared Spectroscopy of Water from a First-Principles Approach. J Phys Chem A 2011; 115:6861-71. [DOI: 10.1021/jp111426r] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Francesco Paesani
- Department of Chemistry and Biochemistry, University of California, San Diego, 9500 Gilman Drive, La Jolla, California 92093, United States
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4
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Ramos-Cordoba E, Lambrecht DS, Head-Gordon M. Charge-transfer and the hydrogen bond: Spectroscopic and structural implications from electronic structure calculations. Faraday Discuss 2011; 150:345-62; discussion 391-418. [DOI: 10.1039/c1fd00004g] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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5
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Calvo F, Parneix P, Van-Oanh NT. Finite temperature infrared spectroscopy of polycyclic aromatic hydrocarbon molecules: Path-integral molecular dynamics. J Chem Phys 2010; 132:124308. [DOI: 10.1063/1.3367719] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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6
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Paesani F, Voth GA. A quantitative assessment of the accuracy of centroid molecular dynamics for the calculation of the infrared spectrum of liquid water. J Chem Phys 2010; 132:014105. [DOI: 10.1063/1.3291212] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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7
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Paesani F, Xantheas SS, Voth GA. Infrared Spectroscopy and Hydrogen-Bond Dynamics of Liquid Water from Centroid Molecular Dynamics with an Ab Initio-Based Force Field. J Phys Chem B 2009; 113:13118-30. [DOI: 10.1021/jp907648y] [Citation(s) in RCA: 114] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Francesco Paesani
- Center for Biophysical Modeling and Simulation and Department of Chemistry, University of Utah, 315 South 1400 East Room 2020, Salt Lake City, Utah 84112-0850, and Chemical and Materials Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352
| | - Sotiris S. Xantheas
- Center for Biophysical Modeling and Simulation and Department of Chemistry, University of Utah, 315 South 1400 East Room 2020, Salt Lake City, Utah 84112-0850, and Chemical and Materials Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352
| | - Gregory A. Voth
- Center for Biophysical Modeling and Simulation and Department of Chemistry, University of Utah, 315 South 1400 East Room 2020, Salt Lake City, Utah 84112-0850, and Chemical and Materials Sciences Division, Pacific Northwest National Laboratory, 902 Battelle Boulevard, P.O. Box 999, MS K1-83, Richland, Washington 99352
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8
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Mielke SL, Truhlar DG. Improved Methods for Feynman Path Integral Calculations of Vibrational−Rotational Free Energies and Application to Isotopic Fractionation of Hydrated Chloride Ions. J Phys Chem A 2009; 113:4817-27. [DOI: 10.1021/jp900834u] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Steven L. Mielke
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
| | - Donald G. Truhlar
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455-0431
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9
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Thomas V, Iftimie R. Toward Understanding the Dissociation of Weak Acids in Water: 1. Using IR Spectroscopy to Identify Proton-Shared Hydrogen-Bonded Ion-Pair Intermediates. J Phys Chem B 2008; 113:4152-60. [DOI: 10.1021/jp807378x] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Vibin Thomas
- Département de Chimie, Université de Montréal, CP 6128, succursale Centre-Ville, Montréal, H3C3J7, Canada
| | - Radu Iftimie
- Département de Chimie, Université de Montréal, CP 6128, succursale Centre-Ville, Montréal, H3C3J7, Canada
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10
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Habershon S, Fanourgakis GS, Manolopoulos DE. Comparison of path integral molecular dynamics methods for the infrared absorption spectrum of liquid water. J Chem Phys 2008; 129:074501. [DOI: 10.1063/1.2968555] [Citation(s) in RCA: 146] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
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11
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Iftimie R, Thomas V, Plessis S, Marchand P, Ayotte P. Spectral Signatures and Molecular Origin of Acid Dissociation Intermediates. J Am Chem Soc 2008; 130:5901-7. [DOI: 10.1021/ja077846o] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Radu Iftimie
- Départment de Chimie, Université de Montréal, CP 6128, succursale Centre-Ville, Montréal H3C3J7, Canada, and Département de Chimie, Université de Sherbrooke, 2500 Boulevard Université, Sherbrooke J1K2R1, Canada
| | - Vibin Thomas
- Départment de Chimie, Université de Montréal, CP 6128, succursale Centre-Ville, Montréal H3C3J7, Canada, and Département de Chimie, Université de Sherbrooke, 2500 Boulevard Université, Sherbrooke J1K2R1, Canada
| | - Sylvain Plessis
- Départment de Chimie, Université de Montréal, CP 6128, succursale Centre-Ville, Montréal H3C3J7, Canada, and Département de Chimie, Université de Sherbrooke, 2500 Boulevard Université, Sherbrooke J1K2R1, Canada
| | - Patrick Marchand
- Départment de Chimie, Université de Montréal, CP 6128, succursale Centre-Ville, Montréal H3C3J7, Canada, and Département de Chimie, Université de Sherbrooke, 2500 Boulevard Université, Sherbrooke J1K2R1, Canada
| | - Patrick Ayotte
- Départment de Chimie, Université de Montréal, CP 6128, succursale Centre-Ville, Montréal H3C3J7, Canada, and Département de Chimie, Université de Sherbrooke, 2500 Boulevard Université, Sherbrooke J1K2R1, Canada
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12
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Rheinecker J, Bowman JM. The calculated infrared spectrum of Cl-H2O using a new full dimensional ab initio potential surface and dipole moment surface. J Chem Phys 2007; 125:133206. [PMID: 17029453 DOI: 10.1063/1.2209675] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We report a full dimensional, ab initio-based global potential energy surface (PES) and dipole moment surface for Cl-H2O. Both surfaces are symmetric with respect to interchange of the H atoms. The PES is a fit to thousands of electronic energies calculated using the coupled-cluster method [CCSD(T)] with a moderately large basis (aug-cc-pVTZ). Vibrational energies and wave functions are accurately obtained using MULTIMODE. The wave function and dipole moment surface are used to calculate and analyze the pure infrared spectrum at 0 K which is compared with experiment. Vibrational energies and the infrared spectra for DOD and HOD/DOH are also presented.
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Affiliation(s)
- Jaime Rheinecker
- Cherry L. Emerson Center for Scientific Computation, Emory University, Atlanta, Georgia 30322, USA
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13
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Swalina C, Wang Q, Chakraborty A, Hammes-Schiffer S. Analysis of Nuclear Quantum Effects on Hydrogen Bonding. J Phys Chem A 2007; 111:2206-12. [PMID: 17388289 DOI: 10.1021/jp0682661] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
The impact of nuclear quantum effects on hydrogen bonding is investigated for a series of hydrogen fluoride (HF)n clusters and a partially solvated fluoride anion, F-(H2O). The nuclear quantum effects are included using the path integral formalism in conjunction with the Car-Parrinello molecular dynamics (PICPMD) method and using the second-order vibrational perturbation theory (VPT2) approach. For the HF clusters, a directional change in the impact of nuclear quantum effects on the hydrogen-bonding strength is observed as the clusters evolve toward the condensed phase. Specifically, the inclusion of nuclear quantum effects increases the F-F distances for the (HF)n=2-4 clusters and decreases the F-F distances for the (HF)n>4 clusters. This directional change occurs because the enhanced electrostatic interactions between the HF monomers become more dominant than the zero point energy effects of librational modes as the size of the HF clusters increases. For the F-(H2O) system, the inclusion of nuclear quantum effects decreases the F-O distance and strengthens the hydrogen bonding interaction between the fluoride anion and the water molecule because of enhanced electrostatic interactions. The vibrationally averaged 19F shielding constant for F-(H2O) is significantly lower than the value for the equilibrium geometry, indicating that the electronic density on the fluorine decreases as a result of the quantum delocalization of the shared hydrogen. Deuteration of this system leads to an increase in the vibrationally averaged F-O distance and nuclear magnetic shielding constant because of the smaller degree of quantum delocalization for deuterium.
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Affiliation(s)
- Chet Swalina
- Department of Chemistry, 104 Chemistry Building, Pennsylvania State University, University Park, Pennsylvania 16802, USA
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14
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Herbert JM, Head-Gordon M. Charge Penetration and the Origin of Large O−H Vibrational Red-Shifts in Hydrated-Electron Clusters, (H2O)n-. J Am Chem Soc 2006; 128:13932-9. [PMID: 17044721 DOI: 10.1021/ja064949i] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The origin of O-H vibrational red-shifts observed experimentally in (H2O)n(-) clusters is analyzed using electronic structure calculations, including natural bond orbital analysis. The red-shifts are shown to arise from significant charge transfer and strong donor-acceptor stabilization between the unpaired electron and O-H sigma* orbitals on a nearby water molecule in a double hydrogen-bond-acceptor ("AA") configuration. The extent of e(-) --> sigma* charge transfer is comparable to the n --> sigma* charge transfer in the most strongly hydrogen-bonded X(-)(H2O) complexes (e.g., X = F, O, OH), even though the latter systems exhibit much larger vibrational red-shifts. In X(-)(H2O), the proton affinity of X(-) induces a low-energy XH...(-)OH diabatic state that becomes accessible in v = 1 of the shared-proton stretch, leading to substantial anharmonicity in this mode. In contrast, the H + (-)OH(H2O)(n-1) diabat of (H2O)n(-) is not energetically accessible; thus, the O-H stretching modes of the AA water are reasonably harmonic, and their red-shifts are less dramatic. Only a small amount of charge penetrates beyond the AA water molecule, even upon vibrational excitation of these AA modes. Implications for modeling of the aqueous electron are discussed.
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Affiliation(s)
- John M Herbert
- Department of Chemistry, University of California, Berkeley, California 94720, USA.
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15
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Jang S. Path-integral centroid dynamics for general initial conditions: A nonequilibrium projection operator formulation. J Chem Phys 2006; 124:64107. [PMID: 16483196 DOI: 10.1063/1.2162887] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The formulation of path-integral centroid dynamics is extended to the quantum dynamics of density operators evolving from general initial states by means of the nonequilibrium projection operator technique. It is shown that the new formulation provides a basis for applying the method of centroid dynamics to nonequilibrium situations and that it allows the derivation of new formal relations, which can be useful in improving current equilibrium centroid dynamics methods. A simple approximation of uniform relaxation for the unprojected portion of the Liouville space propagator leads to a class of practically solvable equations of motion for the centroid variables, but with an undetermined parameter of relaxation. This new class of equations encompasses the centroid molecular-dynamics (CMD) method as a limiting case, and can be applied to both equilibrium and nonequilibrium situations. Tests for the equilibrium dynamics of one-dimensional model systems demonstrate that the new equations with appropriate choice of the relaxation parameter are comparable to the CMD method.
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Affiliation(s)
- Seogjoo Jang
- Department of Chemistry and Biochemistry, Queens College, City University of New York, Flushing, 11367-1597, USA.
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16
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Burnham CJ, Reiter GF, Mayers J, Abdul-Redah T, Reichert H, Dosch H. On the origin of the redshift of the OH stretch in Ice Ih: evidence from the momentum distribution of the protons and the infrared spectral density. Phys Chem Chem Phys 2006; 8:3966-77. [PMID: 17028687 DOI: 10.1039/b605410b] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Recent measurements of the momentum distribution in water and ice have shown that the proton is in a considerably softer potential in ice Ih than in water or the free monomer. This is broadly consistent with the large red shift observed in the vibrational spectrum. We show that existing water models, which treat the intramolecular potential as unchanged by the hydrogen bonding are unable to reproduce the momentum distribution. In addition, even if they can substantially explain the red shift they are unable to explain the large increase in intensity observed in the infrared spectrum in going from the monomer to ice Ih. We show that the inclusion of a bond dipole derivative term is essential to explain the observed intensities in the infrared spectrum. Though this term is partially responsible for the softening of the effective potential of the proton we show that best agreement with the observed momentum distribution requires a further softening of the harmonic component of the intramolecular potential. We introduce an efficient normal-mode molecular dynamics algorithm for calculating the momentum distribution with path-integrals.
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Affiliation(s)
- C J Burnham
- Physics Department, University of Houston, Houston, Texas 77004, USA.
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17
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Ka BJ, Voth GA. An efficient and accurate implementation of centroid molecular dynamics using a Gaussian approximation. J Phys Chem A 2005; 109:11609-17. [PMID: 16354054 DOI: 10.1021/jp053919j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
An approximate method for Centroid Molecular Dynamics (CMD) is presented which uses a Gaussian approximation. The resulting method, called Gaussian CMD (GCMD), is 100-1000 times faster than CMD because it replaces explicit path-integral sampling, which is the most time-consuming part of CMD, with a Gaussian averaging, which can be done analytically. Several methods for computing the Gaussian width parameter in the GCMD approach are also presented. This new method is shown to give satisfactory results for the position correlation function in simple one-dimensional systems when CMD itself is consistent with the exact result. The GCMD and CMD results are also compared for the case of 1-dimensional systems coupled to harmonic baths, with good success. GCMD is further compared to CMD with good success for liquid para-hydrogen at two different temperatures, 14 K and 25 K, and for ortho-deuterium at 20.7 K.
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Affiliation(s)
- Being J Ka
- Center for Biophysical Modeling and Simulation and Department of Chemistry, University of Utah, Salt Lake City, Utah 84112-0850, USA
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18
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Horikoshi A, Kinugawa K. Effective potential analytic continuation calculations of real time quantum correlation functions: asymmetric systems. J Chem Phys 2004; 121:2891-8. [PMID: 15291599 DOI: 10.1063/1.1774161] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We apply the effective potential analytic continuation (EPAC) method to one-dimensional asymmetric potential systems to obtain the real time quantum correlation functions at various temperatures. Comparing the EPAC results with the exact results, we find that for an asymmetric anharmonic oscillator the EPAC results are in very good agreement with the exact ones at low temperature, while this agreement becomes worse as the temperature increases. We also show that the EPAC calculation for a certain type of asymmetric potentials can be reduced to that for the corresponding symmetric potentials.
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Affiliation(s)
- Atsushi Horikoshi
- Japan Science and Technology Agency, Faculty of Science, Nara Women's University, 630-8506.
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19
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Yonetani Y, Kinugawa K. Centroid molecular dynamics approach to the transport properties of liquid para-hydrogen over the wide temperature range. J Chem Phys 2004; 120:10624-33. [PMID: 15268088 DOI: 10.1063/1.1735613] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Fundamental transport properties of liquid para-hydrogen (p-H(2)), i.e., diffusion coefficients, thermal conductivity, shear viscosity, and bulk viscosity, have been evaluated by means of the path integral centroid molecular dynamics (CMD) calculations. These transport properties have been obtained over the wide temperature range, 14-32 K. Calculated values of the diffusion coefficients and the shear viscosity are in good agreement with the experimental values at all the investigated temperatures. Although a relatively large deviation is found for the thermal conductivity, the calculated values are less than three times the amount of the experimental values at any temperature. On the other hand, the classical molecular dynamics has led all the transport properties to much larger deviation. For the bulk viscosity of liquid p-H(2), which was never known from experiments, the present CMD has given a clear temperature dependence. In addition, from the comparison based on the principle of corresponding states, it has been shown that the marked deviation of the transport properties of liquid p-H(2) from the feature which is expected from the molecular parameters is due to the quantum effect.
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Affiliation(s)
- Yoshiteru Yonetani
- Japan Science and Technology Corporation, Department of Chemistry, Faculty of Science, Nara Women's University, Nara 630-8506, Japan
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20
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Ohta Y, Ohta K, Kinugawa K. Ab initio centroid path integral molecular dynamics: Application to vibrational dynamics of diatomic molecular systems. J Chem Phys 2004; 120:312-20. [PMID: 15267291 DOI: 10.1063/1.1626632] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
An ab initio centroid molecular dynamics (CMD) method is developed by combining the CMD method with the ab initio molecular orbital method. The ab initio CMD method is applied to vibrational dynamics of diatomic molecules, H2 and HF. For the H2 molecule, the temperature dependence of the peak frequency of the vibrational spectral density is investigated. The results are compared with those obtained by the ab initio classical molecular dynamics method and exact quantum mechanical treatment. It is shown that the vibrational frequency obtained from the ab initio CMD approaches the exact first excitation frequency as the temperature lowers. For the HF molecule, the position autocorrelation function is also analyzed in detail. The present CMD method is shown to well reproduce the exact quantum result for the information on the vibrational properties of the system.
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Affiliation(s)
- Yasuhito Ohta
- Japan Science and Technology Corporation, Osaka 563-8577, Japan
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21
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Yonetani Y, Kinugawa K. Transport properties of liquid para-hydrogen: The path integral centroid molecular dynamics approach. J Chem Phys 2003. [DOI: 10.1063/1.1616912] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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22
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Saito H, Nagao H, Nishikawa K, Kinugawa K. Molecular collective dynamics in solid para-hydrogen and ortho-deuterium: The Parrinello–Rahman-type path integral centroid molecular dynamics approach. J Chem Phys 2003. [DOI: 10.1063/1.1578474] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Abstract
This review provides a historical context for our understanding of the hydration shell surrounding halide ions and illustrates how the cluster systems can be used, in combination with theory, to elucidate the behavior of water molecules in direct contact with the anion. We discuss how vibrational predissociation spectroscopy, carried out with weakly bound argon atoms, has been employed to deduce the morphology of the small water networks attached to anions in the primary steps of hydration. We emphasize the importance of charge-transfer in the binary interaction, and discuss how this process affects the structures of the larger networks. Finally, we survey how the negatively charged water clusters (H2O)n(-) are providing a molecular-level perspective on how diffuse excess electrons interact with the water networks.
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Affiliation(s)
- William H Robertson
- Sterling Chemistry Laboratory, Department of Chemistry, Yale University, P.O. Box 208107, New Haven, CT 06520, USA.
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24
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Roeselová M, Mucha M, Schmidt B, Jungwirth P. Quantum Dynamics and Spectroscopy of Electron Photodetachment in Cl-···H2O and Cl-···D2O Complexes. J Phys Chem A 2002. [DOI: 10.1021/jp0216171] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Martina Roeselová
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of Czech Republic and Center for Complex Molecular Systems and Biomolecules, Dolejškova 3, 18223 Prague, Czech Republic, and Institut für Mathematik, Scientific Computing, Freie Universität Berlin, Arnimallee 2-6, 14195 Berlin, Germany
| | - Martin Mucha
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of Czech Republic and Center for Complex Molecular Systems and Biomolecules, Dolejškova 3, 18223 Prague, Czech Republic, and Institut für Mathematik, Scientific Computing, Freie Universität Berlin, Arnimallee 2-6, 14195 Berlin, Germany
| | - Burkhard Schmidt
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of Czech Republic and Center for Complex Molecular Systems and Biomolecules, Dolejškova 3, 18223 Prague, Czech Republic, and Institut für Mathematik, Scientific Computing, Freie Universität Berlin, Arnimallee 2-6, 14195 Berlin, Germany
| | - Pavel Jungwirth
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of Czech Republic and Center for Complex Molecular Systems and Biomolecules, Dolejškova 3, 18223 Prague, Czech Republic, and Institut für Mathematik, Scientific Computing, Freie Universität Berlin, Arnimallee 2-6, 14195 Berlin, Germany
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25
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Schlegel HB, Iyengar SS, Li X, Millam JM, Voth GA, Scuseria GE, Frisch MJ. Ab initio molecular dynamics: Propagating the density matrix with Gaussian orbitals. III. Comparison with Born–Oppenheimer dynamics. J Chem Phys 2002. [DOI: 10.1063/1.1514582] [Citation(s) in RCA: 365] [Impact Index Per Article: 16.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
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Kuo IFW, Tobias DJ. Thermal Fluctuations of the Unusually Symmetric and Stable Superoxide Tetrahydrate Complex: An ab Initio Molecular Dynamics Study. J Phys Chem A 2002. [DOI: 10.1021/jp026873s] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
Affiliation(s)
- I-Feng W. Kuo
- Department of Chemistry, University of California, Irvine, California 92697-2025
| | - Douglas J. Tobias
- Department of Chemistry, University of California, Irvine, California 92697-2025
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27
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Burnham CJ, Xantheas SS, Miller MA, Applegate BE, Miller RE. The formation of cyclic water complexes by sequential ring insertion: Experiment and theory. J Chem Phys 2002. [DOI: 10.1063/1.1483259] [Citation(s) in RCA: 121] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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28
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Affiliation(s)
- Pavel Jungwirth
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic and Center for Complex Molecular Systems and Biomolecules, Dolejškova 3, 18223 Prague 8, Czech Republic, and Department of Chemistry and Institute for Surface and Interface Science, University of California, Irvine, California 92697-2025
| | - Douglas J. Tobias
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic and Center for Complex Molecular Systems and Biomolecules, Dolejškova 3, 18223 Prague 8, Czech Republic, and Department of Chemistry and Institute for Surface and Interface Science, University of California, Irvine, California 92697-2025
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29
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Corcelli SA, Kelley JA, Tully JC, Johnson MA. Infrared Characterization of the Icosahedral Shell Closing in Cl-·H2O·Arn (1 ≤ n ≤ 13) Clusters. J Phys Chem A 2002. [DOI: 10.1021/jp013956k] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- S. A. Corcelli
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520
| | - J. A. Kelley
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520
| | - J. C. Tully
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520
| | - M. A. Johnson
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520
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30
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Robertson WH, Weddle GH, Kelley JA, Johnson MA. Solvation of the Cl-·H2O Complex in CCl4 Clusters: The Effect of Solvent-Mediated Charge Redistribution on the Ionic H-Bond. J Phys Chem A 2002. [DOI: 10.1021/jp0137468] [Citation(s) in RCA: 42] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Affiliation(s)
- William H. Robertson
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520
| | - Gary H. Weddle
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520
| | - Jude A. Kelley
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520
| | - Mark A. Johnson
- Sterling Chemistry Laboratory, Yale University, P.O. Box 208107, New Haven, Connecticut 06520
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31
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Iyengar SS, Schlegel HB, Millam JM, A. Voth G, Scuseria GE, Frisch MJ. Ab initio molecular dynamics: Propagating the density matrix with Gaussian orbitals. II. Generalizations based on mass-weighting, idempotency, energy conservation and choice of initial conditions. J Chem Phys 2001. [DOI: 10.1063/1.1416876] [Citation(s) in RCA: 329] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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