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Šebelík V, Duffy CD, Keil E, Polívka T, Hauer J. Understanding Carotenoid Dynamics via the Vibronic Energy Relaxation Approach. J Phys Chem B 2022; 126:3985-3994. [PMID: 35609122 PMCID: PMC9190705 DOI: 10.1021/acs.jpcb.2c00996] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2022] [Revised: 05/03/2022] [Indexed: 11/30/2022]
Abstract
Carotenoids are an integral part of natural photosynthetic complexes, with tasks ranging from light harvesting to photoprotection. Their underlying energy deactivation network of optically dark and bright excited states is extremely efficient: after excitation of light with up to 2.5 eV of photon energy, the system relaxes back to ground state on a time scale of a few picoseconds. In this article, we summarize how a model based on the vibrational energy relaxation approach (VERA) explains the main characteristics of relaxation dynamics after one-photon excitation with special emphasis on the so-called S* state. Lineshapes after two-photon excitation are beyond the current model of VERA. We outline this future line of research in our article. In terms of experimental method development, we discuss which techniques are needed to better describe energy dissipation effects in carotenoids and within the first solvation shell.
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Affiliation(s)
- Václav Šebelík
- Dynamical
Spectroscopy, Department of Chemistry, Technical
University of Munich, Lichtenbergstraße 4, 85748 Garching bei Munich, Germany
| | - Christopher D.
P. Duffy
- Digital
Environment Research Institute, Queen Mary
University of London, London E1 4NS, U.K.
| | - Erika Keil
- Dynamical
Spectroscopy, Department of Chemistry, Technical
University of Munich, Lichtenbergstraße 4, 85748 Garching bei Munich, Germany
| | - Tomáš Polívka
- Department
of Physics, Faculty of Science, University
of South Bohemia, Branišovská 1760, 370
05 České Budějovice, Czech Republic
- Biology
Centre, Institute of Plant Molecular Biology, Czech Academy of Sciences, Branišovská 1160/31, 370 05 České Budějovice, Czech Republic
| | - Jürgen Hauer
- Dynamical
Spectroscopy, Department of Chemistry, Technical
University of Munich, Lichtenbergstraße 4, 85748 Garching bei Munich, Germany
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2
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Bubilaitis V, Hauer J, Abramavicius D. Simulations of pump probe spectra of a molecular complex at high excitation intensity. Chem Phys 2019. [DOI: 10.1016/j.chemphys.2019.110458] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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3
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Cupellini L, Corbella M, Mennucci B, Curutchet C. Electronic energy transfer in biomacromolecules. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2018. [DOI: 10.1002/wcms.1392] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Lorenzo Cupellini
- Dipartimento di Chimica e Chimica Industriale University of Pisa Pisa Italy
| | - Marina Corbella
- Departament de Farmàcia i Tecnologia Farmacèutica i Fisicoquímica and Institut de Química Teòrica i Computacional (IQTC‐UB), Facultat de Farmàcia i Ciències de l'Alimentació Universitat de Barcelona Barcelona Spain
| | - Benedetta Mennucci
- Dipartimento di Chimica e Chimica Industriale University of Pisa Pisa Italy
| | - Carles Curutchet
- Departament de Farmàcia i Tecnologia Farmacèutica i Fisicoquímica and Institut de Química Teòrica i Computacional (IQTC‐UB), Facultat de Farmàcia i Ciències de l'Alimentació Universitat de Barcelona Barcelona Spain
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4
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Cho M, Brixner T, Stiopkin I, Vaswani H, Fleming GR. Two Dimensional Electronic Spectroscopy of Molecular Complexes. J CHIN CHEM SOC-TAIP 2013. [DOI: 10.1002/jccs.200600002] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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5
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Affiliation(s)
- Minhaeng Cho
- Department of Chemistry and Center for Multidimensional Spectroscopy, Korea University, Seoul 136-701, Korea.
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6
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Cheng YC, Lee H, Fleming GR. Efficient Simulation of Three-Pulse Photon-Echo Signals with Application to the Determination of Electronic Coupling in a Bacterial Photosynthetic Reaction Center. J Phys Chem A 2007; 111:9499-508. [PMID: 17696328 DOI: 10.1021/jp0735177] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A time-nonlocal quantum master equation coupled with a perturbative scheme to evaluate the third-order polarization in the phase-matching direction k(s) = -k(1) + k(2) + k(3) is used to efficiently simulate three-pulse photon-echo signals. The present method is capable of describing photon-echo peak shifts including pulse overlap and bath memory effects. In addition, the method treats the non-Markovian evolution of the density matrix and the third-order polarization in a consistent manner, thus is expected to be useful in systems with rapid and complex dynamics. We apply the theoretical method to describe one- and two-color three-pulse photon-echo peak shift experiments performed on a bacterial photosynthetic reaction center and demonstrate that, by properly incorporating the pulse overlap effects, the method can be used to describe simultaneously all peak shift experiments and determine the electronic coupling between the localized Q(y) excitations on the bacteriopheophytin (BPhy) and accessory bateriochlorophyll (BChl) in the reaction center. A value of J = 250 cm(-1) is found for the coupling between BPhy and BChl.
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Affiliation(s)
- Yuan-Chung Cheng
- Department of Chemistry and QB3 Institute, University of California Berkeley, Berkeley, California 94720, USA
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7
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Parkinson DY, Lee H, Fleming GR. Measuring Electronic Coupling in the Reaction Center of Purple Photosynthetic Bacteria by Two-Color, Three-Pulse Photon Echo Peak Shift Spectroscopy. J Phys Chem B 2007; 111:7449-56. [PMID: 17530796 DOI: 10.1021/jp070029q] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
One- and two-color, three-pulse photon echo peak shift spectroscopy (1C and 2C3PEPS) was used to estimate the electronic coupling between the accessory bacteriochlorophyll (B) and the bacteriopheophytin (H) in the reaction center of the purple photosynthetic bacterium Rhodobacter sphaeroides as approximately 170 +/- 30 cm-1. This is the first direct experimental determination of this parameter; it is within the range of values found in previously published calculations. The 1C3PEPS signal of the Qy band of the bacteriochlorophyll B shows that it is weakly coupled to nuclear motions of the bath, whereas the 1C3PEPS signal of the Qy band of the bacteriopheophytin, H, shows that it is more strongly coupled to the bath, but has minimal inhomogeneous broadening. Our simulations capture the major features of the data with the theoretical framework developed in our group to separately calculate the response functions and population dynamics.
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Affiliation(s)
- Dilworth Y Parkinson
- Department of Chemistry, University of California, Berkeley, California 94720, USA
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8
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Vaswani HM, Stenger J, Fromme P, Fleming GR. One- and Two-Color Photon Echo Peak Shift Studies of Photosystem I. J Phys Chem B 2006; 110:26303-12. [PMID: 17181289 DOI: 10.1021/jp061008j] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
Abstract
Wavelength-dependent one- and two-color photon echo peak shift spectroscopy was performed on the chlorophyll Qy band of trimeric photosystem I from Thermosynechococcus elongatus. Sub-100 fs energy transfer steps were observed in addition to longer time scales previously measured by others. In the main PSI absorption peak (675-700 nm), the peak shift decays more slowly with increasing wavelength, implying that energy transfer between pigments of similar excitation energy is slower for pigments with lower site energies. In the far-red region (715 nm), the decay of the peak shift is more rapid and is complete by 1 ps, a consequence of the strong electron-phonon coupling present in this spectral region. Two-color photon echo peak shift data show strong excitonic coupling between pigments absorbing at 675 nm and those absorbing at 700 nm. The one- and two-color peak shifts were simulated using the previously developed energy transfer model (J. Phys. Chem. B 2002, 106, 10251; Biophysical Journal 2003, 85, 140). The simulations agree well with the experimental data. Two-color photon echo peak shift is shown to be far more sensitive to variations in the molecular Hamiltonian than one-color photon echo peak shift spectroscopy.
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Affiliation(s)
- Harsha M Vaswani
- Department of Chemistry, University of California at Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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9
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Pisliakov AV, Mancal T, Fleming GR. Two-dimensional optical three-pulse photon echo spectroscopy. II. Signatures of coherent electronic motion and exciton population transfer in dimer two-dimensional spectra. J Chem Phys 2006; 124:234505. [PMID: 16821927 DOI: 10.1063/1.2200705] [Citation(s) in RCA: 105] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Abstract
Using the nonperturbative approach to the calculation of nonlinear optical spectra developed in a foregoing paper [Mancal et al., J. Chem. Phys. 124, 234504 (2006), preceding paper], calculations of two-dimensional electronic spectra of an excitonically coupled dimer model system are presented. The dissipative exciton transfer dynamics is treated within the Redfield theory and energetic disorder within the molecular ensemble is taken into account. The manner in which the two-dimensional spectra reveal electronic couplings in the aggregate system and the evolution of the spectra in time is studied in detail. Changes in the intensity and shape of the peaks in the two-dimensional relaxation spectra are related to the coherent and dissipative dynamics of the system. It is shown that coherent electronic motion, an electronic analog of a vibrational wave packet, can manifest itself in two-dimensional optical spectra of molecular aggregate systems as a periodic modulation of both the diagonal and off-diagonal peaks.
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Affiliation(s)
- Andrei V Pisliakov
- Department of Chemistry, University of California-Berkeley, Berkeley, CA 94720, USA
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Mancal T, Pisliakov AV, Fleming GR. Two-dimensional optical three-pulse photon echo spectroscopy. I. Nonperturbative approach to the calculation of spectra. J Chem Phys 2006; 124:234504. [PMID: 16821926 DOI: 10.1063/1.2200704] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/27/2023] Open
Abstract
The nonperturbative approach to the calculation of nonlinear optical spectra of Seidner et al. [J. Chem. Phys. 103, 3998 (1995)] is extended to describe four-wave mixing experiments. The system-field interaction is treated nonperturbatively in the semiclassical dipole approximation, enabling a calculation of third order nonlinear spectroscopic signals directly from molecular dynamics and an efficient modeling of multilevel systems exhibiting relaxation and transfer phenomena. The method, coupled with the treatment of dynamics within the Bloch model, is illustrated by calculations of the two-dimensional three-pulse photon echo spectra of a simple model system-a two-electronic-level molecule. The nonperturbative calculations reproduce well-known results obtained by perturbative methods. Technical limitations of the nonperturbative approach in dealing with a dynamic inhomogeneity are discussed, and possible solutions are suggested. An application of the approach to an excitonically coupled dimer system with emphasis on the manifestation of complex exciton dynamics in two-dimensional optical spectra is presented in paper II Pisliakov et al. [J. Chem. Phys. 124, 234505 (2006), following paper].
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Affiliation(s)
- Tomás Mancal
- Department of Chemistry, University of California-Berkeley, Berkeley, CA 94720, USA
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11
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Kjellberg P, Pullerits T. Three-pulse photon echo of an excitonic dimer modeled via Redfield theory. J Chem Phys 2006; 124:024106. [PMID: 16422570 DOI: 10.1063/1.2150447] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
In this article the third-order response of an excitonically coupled dimer is studied. The three-pulse photon echo signals were calculated by extracting polarization components from the total polarization in the corresponding phase-matched directions. The total nonlinear response was obtained by numeric propagation of the density matrix, with the exciton-vibrational coupling modeled via Redfield relaxation theory. The full two-dimensional three-pulse photon echo signals and the peak shift were analyzed in terms of the density-matrix dynamics of coherence dephasing and population relaxation. The location of the two-exciton state was found to be essential for proper modeling of the three-pulse photon echo. In particular, an oscillation in the three-pulse photon echo peak shift is found if the two-exciton state is displaced. The oscillations can be related to the dynamics of the one-exciton coherences.
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Affiliation(s)
- Pär Kjellberg
- Department of Chemical Physics, Lund University, Box 124, 22100 Lund, Sweden
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12
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Yang M. A reduced density-matrix theory of absorption line shape of molecular aggregate. J Chem Phys 2005; 123:124705. [PMID: 16392509 DOI: 10.1063/1.2046668] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A theory for the absorption line shape of molecular aggregates in condensed phase is formulated based on a reduced density-matrix approach. Intermolecular couplings in the aggregates are assumed to be weak (Förster type of energy transfer mechanism). The spin-Boson model is employed to include the effect of electron-phonon coupling. Using the projection operator technique, we derive kinetic equations for the reduced electronic density matrix associated with the absorption spectrum. General expressions of time-dependent rate constants in the kinetic equations are derived by using the cumulant expansion technique. The resulting time-dependent kinetic equations are solved numerically. We illustrate the applicability of the present theory by calculating the line shape of a dimer (a pair of donor and acceptor of energy transfer). For a J-aggregate type of molecular pair (with excitonic redshift), a tail appears on the blue side of the absorption spectrum due to the existence of inhomogeneity in electronic state mixing which is originated from the electron-phonon coupling.
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Affiliation(s)
- Mino Yang
- Department of Chemistry and Basic Sciences Research Institute, Chungbuk National University, Cheongju, Chungbuk 361-763, South Korea.
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13
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Cho M, Fleming GR. The integrated photon echo and solvation dynamics. II. Peak shifts and two-dimensional photon echo of a coupled chromophore system. J Chem Phys 2005; 123:114506. [PMID: 16392572 DOI: 10.1063/1.1955444] [Citation(s) in RCA: 58] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023] Open
Abstract
A theoretical description of one- and two-color photon echo peak shifts (PEPS) and two-dimensional (2D) photon echo spectrum (PES) of a coupled chromophore system are presented. The effects of population relaxation in the one-exciton states on both the PEPS and the 2D PES are investigated. For values of time T shorter than the population relaxation time, a finite two-color peak shift magnitude and nonzero cross peaks in the 2D PES provide evidence of electronic coupling between the chromophores. These two distinct observables, i.e., PEPS and off-diagonal peaks, both originate from the electronic coupling. However, it is shown that the PEPS and 2D PES methods can provide complementary information on the structure-dependent nonlinear optical responses of coupled chromophore systems.
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Affiliation(s)
- Minhaeng Cho
- Department of Chemistry and Center for Multidimensional Spectroscopy, Division of Chemistry and Molecular Engineering, Korea University, Seoul, Korea
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14
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Prall BS, Parkinson DY, Fleming GR. Probing correlated spectral motion: Two-color photon echo study of Nile blue. J Chem Phys 2005; 123:054515. [PMID: 16108677 DOI: 10.1063/1.1940637] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023] Open
Abstract
We performed two-color three-pulse photon echo peak shift experiments on Nile blue in ethylene glycol and acetonitrile to determine the role of solvent dynamics in correlated spectral motion. The system was pumped near the absorption maximum and the correlation between the initial state and the final state was probed at a number of wavelengths, from the absorption maximum to the fluorescence maximum. In addition to solvent dynamics, we found that strongly coupled intramolecular vibrations generated correlations between different spectral regions. The inertial solvent response was found for both solvents to have a time scale on the order of 100-145 fs. This response contributed half of the solvent interaction strength for acetonitrile, but less than a third for ethylene glycol. Several diffusive time scales were observed: 500 fs and 2.5 ps for acetonitrile, and 1, 15, and 100 ps for ethylene glycol. A single description of the solvation dynamics was insufficient to quantitatively describe the dynamics at all probe wavelengths, which could indicate different dynamics in the ground and excited states or the presence of an additional contribution to the signal from the excited-state absorption.
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Affiliation(s)
- Bradley S Prall
- Department of Chemistry, University of California, Berkeley, Berkeley, California 94720, USA
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15
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Gelin M, Egorova D, Domcke W. A new method for the calculation of two-pulse time- and frequency-resolved spectra. Chem Phys 2005. [DOI: 10.1016/j.chemphys.2004.11.033] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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16
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17
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Khalil M, Demirdöven N, Tokmakoff A. Coherent 2D IR Spectroscopy: Molecular Structure and Dynamics in Solution. J Phys Chem A 2003. [DOI: 10.1021/jp0219247] [Citation(s) in RCA: 568] [Impact Index Per Article: 25.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- M. Khalil
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - N. Demirdöven
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - A. Tokmakoff
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
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18
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Gelin MF, Pisliakov AV, Egorova D, Domcke W. A simple model for the calculation of nonlinear optical response functions and femtosecond time-resolved spectra. J Chem Phys 2003. [DOI: 10.1063/1.1547751] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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19
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Nagasawa Y, Seike K, Muromoto T, Okada T. Two-Dimensional Analysis of Integrated Three-Pulse Photon Echo Signals of Nile Blue Doped in PMMA. J Phys Chem A 2003. [DOI: 10.1021/jp027012m] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Yutaka Nagasawa
- Department of Chemistry, Graduate School of Engineering Science, and Research Center for Materials Science at Extreme Conditions, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Kazushige Seike
- Department of Chemistry, Graduate School of Engineering Science, and Research Center for Materials Science at Extreme Conditions, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Takayuki Muromoto
- Department of Chemistry, Graduate School of Engineering Science, and Research Center for Materials Science at Extreme Conditions, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Tadashi Okada
- Department of Chemistry, Graduate School of Engineering Science, and Research Center for Materials Science at Extreme Conditions, Osaka University, Toyonaka, Osaka 560-8531, Japan
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20
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van Mourik F, Frese RN, van der Zwan G, Cogdell RJ, van Grondelle R. Direct Observation of Solvation Dynamics and Dielectric Relaxation in the Photosynthetic Light-Harvesting-2 Complex of Rhodopseudomonas acidophila. J Phys Chem B 2003. [DOI: 10.1021/jp026726u] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Frank van Mourik
- Department of Biophysics and Physics of Complex Systems, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081HV Amsterdam, The Netherlands, Institut de Physique de la Matière Condensée, Faculté des Sciences, Université de Lausanne, CH-1015 Lausanne-Dorigny, Switzerland, Department of Analytical Chemistry and Applied Spectroscopy, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands, and Division of Biochemistry and Molecular Biology, Institute of
| | - Raoul N. Frese
- Department of Biophysics and Physics of Complex Systems, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081HV Amsterdam, The Netherlands, Institut de Physique de la Matière Condensée, Faculté des Sciences, Université de Lausanne, CH-1015 Lausanne-Dorigny, Switzerland, Department of Analytical Chemistry and Applied Spectroscopy, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands, and Division of Biochemistry and Molecular Biology, Institute of
| | - Gert van der Zwan
- Department of Biophysics and Physics of Complex Systems, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081HV Amsterdam, The Netherlands, Institut de Physique de la Matière Condensée, Faculté des Sciences, Université de Lausanne, CH-1015 Lausanne-Dorigny, Switzerland, Department of Analytical Chemistry and Applied Spectroscopy, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands, and Division of Biochemistry and Molecular Biology, Institute of
| | - Richard J. Cogdell
- Department of Biophysics and Physics of Complex Systems, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081HV Amsterdam, The Netherlands, Institut de Physique de la Matière Condensée, Faculté des Sciences, Université de Lausanne, CH-1015 Lausanne-Dorigny, Switzerland, Department of Analytical Chemistry and Applied Spectroscopy, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands, and Division of Biochemistry and Molecular Biology, Institute of
| | - Rienk van Grondelle
- Department of Biophysics and Physics of Complex Systems, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1081, 1081HV Amsterdam, The Netherlands, Institut de Physique de la Matière Condensée, Faculté des Sciences, Université de Lausanne, CH-1015 Lausanne-Dorigny, Switzerland, Department of Analytical Chemistry and Applied Spectroscopy, Faculty of Sciences, Vrije Universiteit, De Boelelaan 1083, 1081HV Amsterdam, The Netherlands, and Division of Biochemistry and Molecular Biology, Institute of
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21
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Shiang JJ, Yoder LM, Sension RJ. Structure and Function in the Isolated Reaction-Center Complex of Photosystem II. 2. Models for Energy Relaxation and Charge Separation in a Protein Matrix. J Phys Chem B 2003. [DOI: 10.1021/jp021983k] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Joseph J. Shiang
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055
| | - Laurie M. Yoder
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055
| | - Roseanne J. Sension
- Department of Chemistry, University of Michigan, Ann Arbor, Michigan 48109-1055
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22
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Sung J, Silbey RJ. Optical four wave mixing spectroscopy for multilevel systems coupled to multimode Brownian oscillators. J Chem Phys 2003. [DOI: 10.1063/1.1534103] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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23
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Nagasawa Y, Watanabe A, Takikawa H, Okada T. Solute Dependence of Three Pulse Photon Echo Peak Shift Measurements in Methanol Solution. J Phys Chem A 2003. [DOI: 10.1021/jp0271559] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Yutaka Nagasawa
- Department of Chemistry, Graduate School of Engineering Science and Research Center for Materials Science at Extreme Conditions, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Ayako Watanabe
- Department of Chemistry, Graduate School of Engineering Science and Research Center for Materials Science at Extreme Conditions, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Hiroko Takikawa
- Department of Chemistry, Graduate School of Engineering Science and Research Center for Materials Science at Extreme Conditions, Osaka University, Toyonaka, Osaka 560-8531, Japan
| | - Tadashi Okada
- Department of Chemistry, Graduate School of Engineering Science and Research Center for Materials Science at Extreme Conditions, Osaka University, Toyonaka, Osaka 560-8531, Japan
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24
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Frenkel and Charge-Transfer Excitons in Organic Solids. ELECTRONIC EXCITATIONS IN ORGANIC NANOSTRUCTURES 2003. [DOI: 10.1016/s1079-4050(03)31001-4] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Abstract
The current state of understanding of molecular resonance energy transfer (RET) and recent developments in the field are reviewed. The development of more general theoretical approaches has uncovered some new principles underlying RET processes. This review brings many of these important new concepts together into a generalization of Förster's original theory. The conclusions of studies investigating the various approximations in Förster theory are summarized. Areas of present and future activity are discussed. The review covers Förster theory for donor-acceptor pairs and electronic coupling for singlet-singlet, triplet-triplet, and superexchange-mediated energy transfer. This includes the transition density picture of Coulombic coupling as well as electronic coupling between molecular aggregates (excitons). Spectral overlaps and ensemble energy transfer rates in disordered aggregates, the role of dielectric properties of the medium, weak versus strong coupling, and new models for energy transfer in complex molecular assemblies are also described.
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Affiliation(s)
- Gregory D Scholes
- Lash-Miller Chemical Laboratories, University of Toronto, 80 St. George Street, Toronto, Ontario, M5S 3H6 Canada.
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26
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Xu QH, Ma YZ, Fleming GR. Different Real and Imaginary Components of the Resonant Third-Order Polarization Revealed by Optical Heterodyne Detected Transient Grating Spectroscopic Studies of Crystal Violet: Model and Experiment. J Phys Chem A 2002. [DOI: 10.1021/jp014714n] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
Affiliation(s)
- Qing-Hua Xu
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Ying-Zhong Ma
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Graham R. Fleming
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
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27
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Szöcs V, Pálszegi T, Tortschanoff A, Kauffmann HF. Electronic coupling and coherences in disordered polymers: Femtosecond 2D-photon echo correlation spectroscopy, signatures of an excitonic two-segmental site system: A theoretical study. J Chem Phys 2002. [DOI: 10.1063/1.1465398] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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28
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Agarwal R, Prall BS, Rizvi AH, Yang M, Fleming GR. Two-color three pulse photon echo peak shift spectroscopy. J Chem Phys 2002. [DOI: 10.1063/1.1459414] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Agarwal R, Rizvi AH, Prall BS, Olsen JD, Hunter CN, Fleming GR. Nature of Disorder and Inter-Complex Energy Transfer in LH2 at Room Temperature: A Three Pulse Photon Echo Peak Shift Study. J Phys Chem A 2002. [DOI: 10.1021/jp014054m] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ritesh Agarwal
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - Abbas H. Rizvi
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - Bradley S. Prall
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - John D. Olsen
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - C. Neil Hunter
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
| | - Graham R. Fleming
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, and Department of Molecular Biology and Biotechnology, University of Sheffield, Western Bank, Sheffield S10 2UH, United Kingdom
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Ohta K, Yang M, Fleming GR. Ultrafast exciton dynamics of J-aggregates in room temperature solution studied by third-order nonlinear optical spectroscopy and numerical simulation based on exciton theory. J Chem Phys 2001. [DOI: 10.1063/1.1403693] [Citation(s) in RCA: 73] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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32
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Xu QH, Fleming GR. Isomerization Dynamics of 1,1’-Diethyl-4,4’-Cyanine (1144C) Studied by Different Third-Order Nonlinear Spectroscopic Measurements. J Phys Chem A 2001. [DOI: 10.1021/jp011924r] [Citation(s) in RCA: 36] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Qing-Hua Xu
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Graham R. Fleming
- Department of Chemistry, University of California, Berkeley and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
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33
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The mechanism of energy transfer in the antenna of photosynthetic purple bacteria. J Photochem Photobiol A Chem 2001. [DOI: 10.1016/s1010-6030(01)00504-4] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Demirdöven N, Khalil M, Golonzka O, Tokmakoff A. Correlation Effects in the Two-Dimensional Vibrational Spectroscopy of Coupled Vibrations. J Phys Chem A 2001. [DOI: 10.1021/jp011215d] [Citation(s) in RCA: 60] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- N. Demirdöven
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - M. Khalil
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - O. Golonzka
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
| | - A. Tokmakoff
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139
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35
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Larsen DS, Ohta K, Xu QH, Cyrier M, Fleming GR. Influence of intramolecular vibrations in third-order, time-domain resonant spectroscopies. I. Experiments. J Chem Phys 2001. [DOI: 10.1063/1.1359240] [Citation(s) in RCA: 77] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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36
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Ohta K, Larsen DS, Yang M, Fleming GR. Influence of intramolecular vibrations in third-order, time-domain resonant spectroscopies. II. Numerical calculations. J Chem Phys 2001. [DOI: 10.1063/1.1359241] [Citation(s) in RCA: 90] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023] Open
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37
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Agarwal R, Yang M, Xu QH, Fleming GR. Three Pulse Photon Echo Peak Shift Study of the B800 Band of the LH2 Complex of Rps. acidophila at Room Temperature: A Coupled Master Equation and Nonlinear Optical Response Function Approach. J Phys Chem B 2001. [DOI: 10.1021/jp0031146] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ritesh Agarwal
- Department of Chemistry, University of California at Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Mino Yang
- Department of Chemistry, University of California at Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Qing-Hua Xu
- Department of Chemistry, University of California at Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
| | - Graham R. Fleming
- Department of Chemistry, University of California at Berkeley, and Physical Biosciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720
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38
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Mostovoy MV, Knoester J. Statistics of Optical Spectra from Single-Ring Aggregates and Its Application to LH2. J Phys Chem B 2000. [DOI: 10.1021/jp001519k] [Citation(s) in RCA: 62] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Maxim V. Mostovoy
- Institute for Theoretical Physics and Materials Science Center, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
| | - Jasper Knoester
- Institute for Theoretical Physics and Materials Science Center, University of Groningen, Nijenborgh 4, 9747 AG Groningen, The Netherlands
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