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Vargas R, Garza J, Martínez A, Ibarra IA. Computational tools to study non-covalent interactions and confinement effects in chemical systems. Chem Commun (Camb) 2024; 60:3008-3018. [PMID: 38376468 DOI: 10.1039/d3cc06347j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2024]
Abstract
Confinement is a very common phenomenon in chemistry, for example, when molecules are located inside cavities. In these conditions, the electronic structure of atoms and molecules is modified. These changes could be mapped through the interaction with other molecules since non-covalent interactions between molecules are also influenced by confinement. In this work we address both topics, non-covalent interactions, and confined systems, using quantum chemistry tools with new software, emphasizing the importance of analyzing both fields simultaneously.
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Affiliation(s)
- Rubicelia Vargas
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa. C.P. 09340, Ciudad de México, Mexico.
| | - Jorge Garza
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa. C.P. 09340, Ciudad de México, Mexico.
| | - Ana Martínez
- Departamento de Materiales de Baja Dimensionalidad. Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México, Ciudad Universitaria S.N., Coyoacán 04510, Ciudad de México, Mexico
- On sabatical at Museo Nacional de Ciencias Naturales, CSIC, Spain
| | - Ilich A Ibarra
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa. C.P. 09340, Ciudad de México, Mexico.
- Laboratorio de Fisicoquímica y Reactividad de Superficies (LaFReS). Instituto de Investigaciones en Materiales, Universidad Nacional Autónoma de México, Ciudad Universitaria S.N., Coyoacán 04510, Ciudad de México, Mexico
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2
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The Exchange-Correlation Effects on the Electronic Bands of Hybrid Armchair Single-Walled Carbon Boron Nitride Nanostructure. CRYSTALS 2022. [DOI: 10.3390/cryst12030394] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]
Abstract
This study investigates the effect of exchange-correlation on the electronic properties of hybridized hetero-structured nanomaterials, called single-walled carbon boron nitride nanotubes (SWCBNNT). A first principles (ab initio) method implemented in Quantum ESPRESSO codes, together with different parametrizations (local density approximation (LDA) formulated by Perdew Zunga (PZ) and the generalized gradient approximation (GGA) proposed by Perdew–Burke–Ernzerhof (PBE) and Perdew–Wang 91 (PW91)), were used in this study. It has been observed that the disappearance of interface states in the band gap was due to the discontinuity of the π–π bonds in some segments of SWCNT, which resulted in the asymmetric distribution in the two segments. This work has successfully created a band gap in SWCBNNT, where the PBE exchange-correlation functional provides a well-agreed band gap value of 1.8713 eV. Effects of orbitals on electronic properties have also been studied elaborately. It has been identified that the Py orbital gives the largest contribution to the electrical properties of our new hybrid SWCBNNT nanostructures. This study may open a new avenue for tailoring bandgap in the hybrid heterostructured nanomaterials towards practical applications with next-generation optoelectronic devices, especially in LED nanoscience and nanotechnology.
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3
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Akter S, Vargas JA, Sharkas K, Peralta JE, Jackson KA, Baruah T, Zope RR. How well do self-interaction corrections repair the overestimation of static polarizabilities in density functional calculations? Phys Chem Chem Phys 2021; 23:18678-18685. [PMID: 34612405 DOI: 10.1039/d0cp06512a] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We examine the effect of removing self-interaction error (SIE) on the calculation of molecular polarizabilities in the local spin density (LSDA) and generalized gradient approximations (GGA). To this end, we utilize a database of 132 molecules taken from a recent benchmark study [Hait and Head-Gordon, Phys. Chem. Chem. Phys., 2018, 20, 19800] to assess the influence of SIE on polarizabilities by comparing results with accurate reference data. Our results confirm that the general overestimation of molecular polarizabilities by these density functional approximations can be attributed to SIE. However, removing SIE using the Perdew-Zunger self-interaction-correction (PZ-SIC) method, implemented using the Fermi-Löwdin Orbital SIC approach, leads to an underestimation of molecular polarizabilities, showing that PZ-SIC overcorrects when combined with LSDA or GGA. Application of a recently proposed locally scaled SIC [Zope, et al., J. Chem. Phys., 2019, 151, 214108] is found to provide more accurate polarizabilities. We attribute this to the ability of the local scaling scheme to selectively correct for SIE in the regions of space where the correction is needed most.
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Affiliation(s)
- Sharmin Akter
- Computational Science Program, The University of Texas at El Paso, El Paso, Texas 79968, USA.
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4
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Diaz CM, Suryanarayana P, Xu Q, Baruah T, Pask JE, Zope RR. Implementation of Perdew–Zunger self-interaction correction in real space using Fermi–Löwdin orbitals. J Chem Phys 2021; 154:084112. [DOI: 10.1063/5.0031341] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Carlos M. Diaz
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Phanish Suryanarayana
- College of Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Qimen Xu
- College of Engineering, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - Tunna Baruah
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - John E. Pask
- Physics Division, Lawrence Livermore National Laboratory, Livermore, California 94550, USA
| | - Rajendra R. Zope
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
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5
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Romero S, Yamamoto Y, Baruah T, Zope RR. Local self-interaction correction method with a simple scaling factor. Phys Chem Chem Phys 2021; 23:2406-2418. [DOI: 10.1039/d0cp06282k] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The local self-interaction correction method with a simple scaling factor performs better than the Perdew-Zunger self-interaction correction method and also provides a good description of the binding energies of weakly bonded water clusters.
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Affiliation(s)
- Selim Romero
- Department of Physics
- University of Texas at El Paso
- El Paso
- USA
- Computational Science Program
| | - Yoh Yamamoto
- Department of Physics
- University of Texas at El Paso
- El Paso
- USA
| | - Tunna Baruah
- Department of Physics
- University of Texas at El Paso
- El Paso
- USA
- Computational Science Program
| | - Rajendra R. Zope
- Department of Physics
- University of Texas at El Paso
- El Paso
- USA
- Computational Science Program
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6
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Schwalbe S, Fiedler L, Kraus J, Kortus J, Trepte K, Lehtola S. PyFLOSIC: Python-based Fermi–Löwdin orbital self-interaction correction. J Chem Phys 2020; 153:084104. [DOI: 10.1063/5.0012519] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Sebastian Schwalbe
- Institute of Theoretical Physics, TU Bergakademie Freiberg, Leipziger Str. 23, D-09599 Freiberg, Germany
| | - Lenz Fiedler
- Institute of Theoretical Physics, TU Bergakademie Freiberg, Leipziger Str. 23, D-09599 Freiberg, Germany
| | - Jakob Kraus
- Institute of Theoretical Physics, TU Bergakademie Freiberg, Leipziger Str. 23, D-09599 Freiberg, Germany
| | - Jens Kortus
- Institute of Theoretical Physics, TU Bergakademie Freiberg, Leipziger Str. 23, D-09599 Freiberg, Germany
| | - Kai Trepte
- Department of Physics, Central Michigan University, Mount Pleasant, Michigan 48859, USA
| | - Susi Lehtola
- Department of Chemistry, University of Helsinki, P.O. Box 55 (A. I. Virtasen Aukio 1), FI-00014 University of Helsinki, Finland
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7
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Aprà E, Bylaska EJ, de Jong WA, Govind N, Kowalski K, Straatsma TP, Valiev M, van Dam HJJ, Alexeev Y, Anchell J, Anisimov V, Aquino FW, Atta-Fynn R, Autschbach J, Bauman NP, Becca JC, Bernholdt DE, Bhaskaran-Nair K, Bogatko S, Borowski P, Boschen J, Brabec J, Bruner A, Cauët E, Chen Y, Chuev GN, Cramer CJ, Daily J, Deegan MJO, Dunning TH, Dupuis M, Dyall KG, Fann GI, Fischer SA, Fonari A, Früchtl H, Gagliardi L, Garza J, Gawande N, Ghosh S, Glaesemann K, Götz AW, Hammond J, Helms V, Hermes ED, Hirao K, Hirata S, Jacquelin M, Jensen L, Johnson BG, Jónsson H, Kendall RA, Klemm M, Kobayashi R, Konkov V, Krishnamoorthy S, Krishnan M, Lin Z, Lins RD, Littlefield RJ, Logsdail AJ, Lopata K, Ma W, Marenich AV, Martin Del Campo J, Mejia-Rodriguez D, Moore JE, Mullin JM, Nakajima T, Nascimento DR, Nichols JA, Nichols PJ, Nieplocha J, Otero-de-la-Roza A, Palmer B, Panyala A, Pirojsirikul T, Peng B, Peverati R, Pittner J, Pollack L, Richard RM, Sadayappan P, Schatz GC, Shelton WA, Silverstein DW, Smith DMA, Soares TA, Song D, Swart M, Taylor HL, Thomas GS, Tipparaju V, Truhlar DG, Tsemekhman K, Van Voorhis T, Vázquez-Mayagoitia Á, Verma P, Villa O, Vishnu A, Vogiatzis KD, Wang D, Weare JH, Williamson MJ, Windus TL, Woliński K, Wong AT, Wu Q, Yang C, Yu Q, Zacharias M, Zhang Z, Zhao Y, Harrison RJ. NWChem: Past, present, and future. J Chem Phys 2020; 152:184102. [PMID: 32414274 DOI: 10.1063/5.0004997] [Citation(s) in RCA: 317] [Impact Index Per Article: 79.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
Specialized computational chemistry packages have permanently reshaped the landscape of chemical and materials science by providing tools to support and guide experimental efforts and for the prediction of atomistic and electronic properties. In this regard, electronic structure packages have played a special role by using first-principle-driven methodologies to model complex chemical and materials processes. Over the past few decades, the rapid development of computing technologies and the tremendous increase in computational power have offered a unique chance to study complex transformations using sophisticated and predictive many-body techniques that describe correlated behavior of electrons in molecular and condensed phase systems at different levels of theory. In enabling these simulations, novel parallel algorithms have been able to take advantage of computational resources to address the polynomial scaling of electronic structure methods. In this paper, we briefly review the NWChem computational chemistry suite, including its history, design principles, parallel tools, current capabilities, outreach, and outlook.
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Affiliation(s)
- E Aprà
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - E J Bylaska
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - W A de Jong
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - N Govind
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - K Kowalski
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - T P Straatsma
- National Center for Computational Sciences, Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - M Valiev
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - H J J van Dam
- Brookhaven National Laboratory, Upton, New York 11973, USA
| | - Y Alexeev
- Argonne Leadership Computing Facility, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - J Anchell
- Intel Corporation, Santa Clara, California 95054, USA
| | - V Anisimov
- Argonne Leadership Computing Facility, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - F W Aquino
- QSimulate, Cambridge, Massachusetts 02139, USA
| | - R Atta-Fynn
- Department of Physics, The University of Texas at Arlington, Arlington, Texas 76019, USA
| | - J Autschbach
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260, USA
| | - N P Bauman
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - J C Becca
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - D E Bernholdt
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | | | - S Bogatko
- 4G Clinical, Wellesley, Massachusetts 02481, USA
| | - P Borowski
- Faculty of Chemistry, Maria Curie-Skłodowska University in Lublin, 20-031 Lublin, Poland
| | - J Boschen
- Department of Chemistry, Iowa State University, Ames, Iowa 50011, USA
| | - J Brabec
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, 18223 Prague 8, Czech Republic
| | - A Bruner
- Department of Chemistry and Physics, University of Tennessee at Martin, Martin, Tennessee 38238, USA
| | - E Cauët
- Service de Chimie Quantique et Photophysique (CP 160/09), Université libre de Bruxelles, B-1050 Brussels, Belgium
| | - Y Chen
- Facebook, Menlo Park, California 94025, USA
| | - G N Chuev
- Institute of Theoretical and Experimental Biophysics, Russian Academy of Science, Pushchino, Moscow Region 142290, Russia
| | - C J Cramer
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - J Daily
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - M J O Deegan
- SKAO, Jodrell Bank Observatory, Macclesfield SK11 9DL, United Kingdom
| | - T H Dunning
- Department of Chemistry, University of Washington, Seattle, Washington 98195, USA
| | - M Dupuis
- Department of Chemistry, University at Buffalo, State University of New York, Buffalo, New York 14260, USA
| | - K G Dyall
- Dirac Solutions, Portland, Oregon 97229, USA
| | - G I Fann
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - S A Fischer
- Chemistry Division, U. S. Naval Research Laboratory, Washington, DC 20375, USA
| | - A Fonari
- School of Chemistry and Biochemistry, Georgia Institute of Technology, Atlanta, Georgia 30332, USA
| | - H Früchtl
- EaStCHEM and School of Chemistry, University of St. Andrews, St. Andrews KY16 9ST, United Kingdom
| | - L Gagliardi
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - J Garza
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, Col. Vicentina, Iztapalapa, C.P. 09340 Ciudad de México, Mexico
| | - N Gawande
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - S Ghosh
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 5545, USA
| | - K Glaesemann
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - A W Götz
- San Diego Supercomputer Center, University of California, San Diego, La Jolla, California 92093, USA
| | - J Hammond
- Intel Corporation, Santa Clara, California 95054, USA
| | - V Helms
- Center for Bioinformatics, Saarland University, D-66041 Saarbrücken, Germany
| | - E D Hermes
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94551, USA
| | - K Hirao
- Next-generation Molecular Theory Unit, Advanced Science Institute, RIKEN, Saitama 351-0198, Japan
| | - S Hirata
- Department of Chemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA
| | - M Jacquelin
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - L Jensen
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - B G Johnson
- Acrobatiq, Pittsburgh, Pennsylvania 15206, USA
| | - H Jónsson
- Faculty of Physical Sciences, University of Iceland, Reykjavík, Iceland and Department of Applied Physics, Aalto University, FI-00076 Aalto, Espoo, Finland
| | - R A Kendall
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - M Klemm
- Intel Corporation, Santa Clara, California 95054, USA
| | - R Kobayashi
- ANU Supercomputer Facility, Australian National University, Canberra, Australia
| | - V Konkov
- Chemistry Program, Florida Institute of Technology, Melbourne, Florida 32901, USA
| | - S Krishnamoorthy
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - M Krishnan
- Facebook, Menlo Park, California 94025, USA
| | - Z Lin
- Department of Physics, University of Science and Technology of China, Hefei, China
| | - R D Lins
- Aggeu Magalhaes Institute, Oswaldo Cruz Foundation, Recife, Brazil
| | | | - A J Logsdail
- Cardiff Catalysis Institute, School of Chemistry, Cardiff University, Cardiff, Wales CF10 3AT, United Kingdom
| | - K Lopata
- Department of Chemistry, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | - W Ma
- Institute of Software, Chinese Academy of Sciences, Beijing, China
| | - A V Marenich
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | - J Martin Del Campo
- Departamento de Física y Química Teórica, Facultad de Química, Universidad Nacional Autónoma de México, México City, Mexico
| | - D Mejia-Rodriguez
- Quantum Theory Project, Department of Physics, University of Florida, Gainesville, Florida 32611, USA
| | - J E Moore
- Intel Corporation, Santa Clara, California 95054, USA
| | - J M Mullin
- DCI-Solutions, Aberdeen Proving Ground, Maryland 21005, USA
| | - T Nakajima
- Computational Molecular Science Research Team, RIKEN Center for Computational Science, Kobe, Hyogo 650-0047, Japan
| | - D R Nascimento
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - J A Nichols
- Oak Ridge National Laboratory, Oak Ridge, Tennessee 37831, USA
| | - P J Nichols
- Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA
| | - J Nieplocha
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - A Otero-de-la-Roza
- Departamento de Química Física y Analítica, Facultad de Química, Universidad de Oviedo, 33006 Oviedo, Spain
| | - B Palmer
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - A Panyala
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - T Pirojsirikul
- Department of Chemistry, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
| | - B Peng
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - R Peverati
- Chemistry Program, Florida Institute of Technology, Melbourne, Florida 32901, USA
| | - J Pittner
- J. Heyrovský Institute of Physical Chemistry, Academy of Sciences of the Czech Republic, v.v.i., 18223 Prague 8, Czech Republic
| | - L Pollack
- StudyPoint, Boston, Massachusetts 02114, USA
| | | | - P Sadayappan
- School of Computing, University of Utah, Salt Lake City, Utah 84112, USA
| | - G C Schatz
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| | - W A Shelton
- Cain Department of Chemical Engineering, Louisiana State University, Baton Rouge, Louisiana 70803, USA
| | | | - D M A Smith
- Intel Corporation, Santa Clara, California 95054, USA
| | - T A Soares
- Dept. of Fundamental Chemistry, Universidade Federal de Pernambuco, Recife, Brazil
| | - D Song
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - M Swart
- ICREA, 08010 Barcelona, Spain and Universitat Girona, Institut de Química Computacional i Catàlisi, Campus Montilivi, 17003 Girona, Spain
| | - H L Taylor
- CD-adapco/Siemens, Melville, New York 11747, USA
| | - G S Thomas
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - V Tipparaju
- Cray Inc., Bloomington, Minnesota 55425, USA
| | - D G Truhlar
- Department of Chemistry, Chemical Theory Center, and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, USA
| | | | - T Van Voorhis
- Department of Chemistry, Massachusetts Institute of Technology, Cambridge, Massachusetts 02139, USA
| | - Á Vázquez-Mayagoitia
- Argonne Leadership Computing Facility, Argonne National Laboratory, Argonne, Illinois 60439, USA
| | - P Verma
- 1QBit, Vancouver, British Columbia V6E 4B1, Canada
| | - O Villa
- NVIDIA, Santa Clara, California 95051, USA
| | - A Vishnu
- Pacific Northwest National Laboratory, Richland, Washington 99352, USA
| | - K D Vogiatzis
- Department of Chemistry, University of Tennessee, Knoxville, Tennessee 37996, USA
| | - D Wang
- College of Physics and Electronics, Shandong Normal University, Jinan, Shandong 250014, China
| | - J H Weare
- Department of Chemistry and Biochemistry, University of California San Diego, La Jolla, California 92093, USA
| | - M J Williamson
- Department of Chemistry, Cambridge University, Lensfield Road, Cambridge CB2 1EW, United Kingdom
| | - T L Windus
- Department of Chemistry, Iowa State University and Ames Laboratory, Ames, Iowa 50011, USA
| | - K Woliński
- Faculty of Chemistry, Maria Curie-Skłodowska University in Lublin, 20-031 Lublin, Poland
| | - A T Wong
- Qwil, San Francisco, California 94107, USA
| | - Q Wu
- Brookhaven National Laboratory, Upton, New York 11973, USA
| | - C Yang
- Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Q Yu
- AMD, Santa Clara, California 95054, USA
| | - M Zacharias
- Department of Physics, Technical University of Munich, 85748 Garching, Germany
| | - Z Zhang
- Stanford Research Computing Center, Stanford University, Stanford, California 94305, USA
| | - Y Zhao
- State Key Laboratory of Silicate Materials for Architectures, International School of Materials Science and Engineering, Wuhan University of Technology, Wuhan 430070, China
| | - R J Harrison
- Institute for Advanced Computational Science, Stony Brook University, Stony Brook, New York 11794, USA
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8
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Yamamoto Y, Romero S, Baruah T, Zope RR. Improvements in the orbitalwise scaling down of Perdew–Zunger self-interaction correction in many-electron regions. J Chem Phys 2020; 152:174112. [DOI: 10.1063/5.0004738] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Yoh Yamamoto
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Selim Romero
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Tunna Baruah
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Rajendra R. Zope
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
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9
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Zope RR, Yamamoto Y, Diaz CM, Baruah T, Peralta JE, Jackson KA, Santra B, Perdew JP. A step in the direction of resolving the paradox of Perdew-Zunger self-interaction correction. J Chem Phys 2019; 151:214108. [DOI: 10.1063/1.5129533] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Rajendra R. Zope
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Yoh Yamamoto
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Carlos M. Diaz
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Tunna Baruah
- Department of Physics, University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Juan E. Peralta
- Physics Department and Science of Advanced Materials Program, Central Michigan University, Mt. Pleasant, Michigan 48859, USA
| | - Koblar A. Jackson
- Physics Department and Science of Advanced Materials Program, Central Michigan University, Mt. Pleasant, Michigan 48859, USA
| | - Biswajit Santra
- Department of Physics, Temple University, Philadelphia, Pennsylvania 19122, USA and Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
| | - John P. Perdew
- Department of Physics, Temple University, Philadelphia, Pennsylvania 19122, USA and Department of Chemistry, Temple University, Philadelphia, Pennsylvania 19122, USA
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10
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Yamamoto Y, Diaz CM, Basurto L, Jackson KA, Baruah T, Zope RR. Fermi-Löwdin orbital self-interaction correction using the strongly constrained and appropriately normed meta-GGA functional. J Chem Phys 2019; 151:154105. [PMID: 31640373 DOI: 10.1063/1.5120532] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Despite the success of density functional approximations (DFAs) in describing the electronic properties of many-electron systems, the most widely used approximations suffer from self-interaction errors (SIEs) that limit their predictive power. Here, we describe the effects of removing SIE from the strongly constrained and appropriately normed (SCAN) meta-generalized gradient approximation using the Fermi-Löwdin Orbital Self-Interaction Correction (FLOSIC) method. FLOSIC is a size-extensive implementation of the Perdew-Zunger self-interaction correction (PZ-SIC) formalism. We find that FLOSIC-SCAN calculations require careful treatment of numerical details and an integration grid that yields reliable accuracy with this approach. We investigate the performance of FLOSIC-SCAN for predicting a wide array of properties and find that it provides better results than FLOSIC-LDA and FLOSIC-PBE in nearly all cases. It also gives better predictions than SCAN for orbital energies and dissociation energies where self-interaction effects are known to be important, but total energies and atomization energies are made worse. For these properties, we also investigate the use of the self-consistent FLOSIC-SCAN density in the SCAN functional and find that this DFA@FLOSIC-DFA approach yields improved results compared to pure, self-consistent SCAN calculations. Thus, FLOSIC-SCAN provides improved results over the parent SCAN functional in cases where SIEs are dominant, and even when they are not, if the SCAN@FLOSIC-SCAN method is used.
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Affiliation(s)
- Yoh Yamamoto
- Department of Physics, The University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Carlos M Diaz
- Department of Physics, The University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Luis Basurto
- Department of Physics, The University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Koblar A Jackson
- Physics Department and Science of Advanced Materials Program, Central Michigan University, Mt. Pleasant, Michigan 48859, USA
| | - Tunna Baruah
- Department of Physics, The University of Texas at El Paso, El Paso, Texas 79968, USA
| | - Rajendra R Zope
- Department of Physics, The University of Texas at El Paso, El Paso, Texas 79968, USA
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11
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Fermi-Löwdin orbital self-interaction corrected density functional theory: Ionization potentials and enthalpies of formation. J Comput Chem 2018; 39:2463-2471. [DOI: 10.1002/jcc.25586] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2018] [Revised: 08/15/2018] [Accepted: 08/16/2018] [Indexed: 11/07/2022]
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12
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Lehtola S, Head-Gordon M, Jónsson H. Complex Orbitals, Multiple Local Minima, and Symmetry Breaking in Perdew-Zunger Self-Interaction Corrected Density Functional Theory Calculations. J Chem Theory Comput 2016; 12:3195-207. [PMID: 27232582 DOI: 10.1021/acs.jctc.6b00347] [Citation(s) in RCA: 44] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Implentation of seminumerical stability analysis for calculations using the Perdew-Zunger self-interaction correction is described. It is shown that real-valued solutions of the Perdew-Zunger equations for gas phase atoms are unstable with respect to imaginary orbital rotations, confirming that a proper implementation of the correction requires complex-valued orbitals. The orbital density dependence of the self-interaction corrected functional is found to lead to multiple local minima in the case of the acrylic acid, H6, and benzene molecules. In the case of benzene, symmetry breaking that results in incorrect ground state geometry is found to occur, erroneously leading to alternating bond lengths in the molecule.
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Affiliation(s)
- Susi Lehtola
- Chemical Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States
| | - Martin Head-Gordon
- Chemical Sciences Division, Lawrence Berkeley National Laboratory , Berkeley, California 94720, United States.,Department of Chemistry, University of California , Berkeley, California 94720, United States
| | - Hannes Jónsson
- Faculty of Physical Sciences, University of Iceland , 107 Reykjavík, Iceland.,Department of Applied Physics, Aalto University School of Science , P.O. Box 11000, FI-00076 Aalto, Espoo, Finland
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13
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Ma J, Wang LW. Using Wannier functions to improve solid band gap predictions in density functional theory. Sci Rep 2016; 6:24924. [PMID: 27114185 PMCID: PMC4845067 DOI: 10.1038/srep24924] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2015] [Accepted: 03/31/2016] [Indexed: 11/28/2022] Open
Abstract
Enforcing a straight-line condition of the total energy upon removal/addition of fractional electrons on eigen states has been successfully applied to atoms and molecules for calculating ionization potentials and electron affinities, but fails for solids due to the extended nature of the eigen orbitals. Here we have extended the straight-line condition to the removal/addition of fractional electrons on Wannier functions constructed within the occupied/unoccupied subspaces. It removes the self-interaction energies of those Wannier functions, and yields accurate band gaps for solids compared to experiments. It does not have any adjustable parameters and the computational cost is at the DFT level. This method can also work for molecules, providing eigen energies in good agreement with experimental ionization potentials and electron affinities. Our approach can be viewed as an alternative approach of the standard LDA+U procedure.
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Affiliation(s)
- Jie Ma
- Joint Center for Artificial Photosynthesis and Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Lin-Wang Wang
- Joint Center for Artificial Photosynthesis and Materials Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
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14
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Scaling correction approaches for reducing delocalization error in density functional approximations. Sci China Chem 2015. [DOI: 10.1007/s11426-015-5501-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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15
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Lehtola S, Jónsson H. Variational, Self-Consistent Implementation of the Perdew–Zunger Self-Interaction Correction with Complex Optimal Orbitals. J Chem Theory Comput 2014; 10:5324-37. [DOI: 10.1021/ct500637x] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
Affiliation(s)
- Susi Lehtola
- COMP
Centre of Excellence and Department of Applied Physics, P.O. Box 11100, FI-00076 Aalto University, Espoo, Finland
| | - Hannes Jónsson
- COMP
Centre of Excellence and Department of Applied Physics, P.O. Box 11100, FI-00076 Aalto University, Espoo, Finland
- Faculty
of Physical Sciences, University of Iceland, Reykjavík, Iceland
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16
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The surprising oxidation state of fumed silica and the nature of water binding to silicon oxides and hydroxides. Chem Phys Lett 2011. [DOI: 10.1016/j.cplett.2010.11.013] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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17
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Rapacioli M, Spiegelman F, Scemama A, Mirtschink A. Modeling Charge Resonance in Cationic Molecular Clusters: Combining DFT-Tight Binding with Configuration Interaction. J Chem Theory Comput 2010; 7:44-55. [DOI: 10.1021/ct100412f] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
Affiliation(s)
- Mathias Rapacioli
- Université de Toulouse, UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, 118 Route de Narbonne, F-31062 Toulouse, France, and CNRS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, F-31062 Toulouse, France
| | - Fernand Spiegelman
- Université de Toulouse, UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, 118 Route de Narbonne, F-31062 Toulouse, France, and CNRS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, F-31062 Toulouse, France
| | - Anthony Scemama
- Université de Toulouse, UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, 118 Route de Narbonne, F-31062 Toulouse, France, and CNRS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, F-31062 Toulouse, France
| | - André Mirtschink
- Université de Toulouse, UPS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, 118 Route de Narbonne, F-31062 Toulouse, France, and CNRS, LCPQ (Laboratoire de Chimie et Physique Quantiques), IRSAMC, F-31062 Toulouse, France
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18
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Pham-Tran NN, Nguyen MT. Electronic structure and properties of some oligomers based on fluorinated 1H-phospholes: n- versus p-type materials. CR CHIM 2010. [DOI: 10.1016/j.crci.2010.06.011] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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19
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Rincón L, Hasmy A, Gonzalez CA, Almeida R. Extended Hückel tight-binding approach to electronic excitations. J Chem Phys 2008; 129:044107. [DOI: 10.1063/1.2956489] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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20
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Umezawa N. Local-density approximation for orbital densities applied to the self-interaction correction. J Chem Phys 2008; 128:044105. [PMID: 18247928 DOI: 10.1063/1.2822113] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A simple approximation to the functional derivative of Perdew-Zunger-type self-interaction-corrected local-spin density functional is suggested. In this approach, the orbital density |phi(isigma)(r)|(2) is regarded as a functional of the local electron density |phi(isigma)(r)|(2)=n(isigma)(n(sigma)(r)) so as to enable a functional derivative of n(isigma)(n(sigma)(r)) with respect to n(sigma)(r). Our computational results show that this approximation gives fairly good estimates of the total energy, the ionization potential, and the electron affinity for atoms. Comparative studies of this method with the averaged-density approximation and the global averaging method for the self-interaction correction are made.
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Affiliation(s)
- Naoto Umezawa
- National Institute for Materials Science, Advanced Electronic Materials Center, Namiki 1-1, Tsukuba, Ibaraki 305-0044, Japan.
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21
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Liao MS, Bonifassi P, Leszczynski J, Huang MJ. Electronic structure, absorption spectra, and hyperpolarisabilities of some novel push–pull zinc porphyrins. A DFT/TDDFT study. Mol Phys 2008. [DOI: 10.1080/00268970701870991] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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22
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Tu G, Carravetta V, Vahtras O, Agren H. Core ionization potentials from self-interaction corrected Kohn-Sham orbital energies. J Chem Phys 2008; 127:174110. [PMID: 17994810 DOI: 10.1063/1.2777141] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We propose a simple self-interaction correction to Kohn-Sham orbital energies in order to apply ground state Kohn-Sham density functional theory to accurate predictions of core electron binding energies and chemical shifts. The proposition is explored through a series of calculations of organic compounds of different sizes and types. Comparison is made versus experiment and the "DeltaKohn-Sham" method employing separate state optimizations of the ground and core hole states, with the use of the B3LYP functional and different basis sets. A parameter alpha is introduced for a best fitting of computed and experimental ionization potentials. It is found that internal parametrizations in terms of basis set expansions can be well controlled. With a unique alpha=0.72 and basis set larger than 6-31G, the core ionization energies (IPs) of the self-interaction corrected Kohn-Sham calculations fit quite well to the experimental values. Hence, self-interaction corrected Kohn-Sham calculations seem to provide a promising tool for core IPs that combines accuracy and efficiency.
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Affiliation(s)
- Guangde Tu
- Institute of Chemical-Physical Processes, Area of Research CNR, via Moruzzi 1, 56124 Pisa, Italy
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23
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Frontana C, Vázquez-Mayagoitia A, Garza J, Vargas R, González I. Substituent effect on a family of quinones in aprotic solvents: an experimental and theoretical approach. J Phys Chem A 2007; 110:9411-9. [PMID: 16869691 DOI: 10.1021/jp060836+] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
In this work a comparison between redox potentials, obtained by constructing current-potential plots from chronoamperometric measurements, and the parameter sigma(x), as proposed by Zuman in terms of the Hammett substituent parameters, was performed for several quinone compounds. This study shows the limitations of this approach and proves that methods based on quantum chemistry can be used to study the substituent effect in quinone systems. By using the Density Functional Theory, in the Kohn-Sham context with three exchange-correlation functionals, BLYP, B3LYP, and BHLYP, it was found that the electron affinity is good enough to give a useful relationship with experimental redox potentials of quinone systems. This conclusion is reached when the basis set functions involve diffuse functions, and also when the Hartree-Fock exchange energy is included in the exchange-correlation functional. The Fukui function, to describe preferential sites involved at initial stages of a system that bind an electron, is analyzed when electron donor and electron acceptor groups are present as substituents in quinone systems. The methods applied in this work are valid for any kind of quinone compound and will be used in further analysis of the electron reorganization in semiquinone species.
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Affiliation(s)
- Carlos Frontana
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina. Iztapalapa, CP 09340, México DF, México
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24
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Namazian M, Coote ML. Accurate Calculation of Absolute One-Electron Redox Potentials of Somepara-Quinone Derivatives in Acetonitrile. J Phys Chem A 2007; 111:7227-32. [PMID: 17625811 DOI: 10.1021/jp0725883] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Standard ab initio molecular orbital theory and density functional theory calculations have been used to calculate absolute one-electron reduction potentials of several para-quinones in acetonitrile. The high-level composite method of G3(MP2)-RAD is used for the gas-phase calculations and a continuum model of solvation, CPCM, has been employed to calculate solvation energies. To compare the theoretical reduction potentials with experiment, the reduction potentials relative to a standard calomel electrode (SCE) have also been calculated and compared to experimental values. The average error of the calculated reduction potentials using the proposed method is 0.07 V without any additional approximation. An ONIOM method in which the core is studied at G3(MP2)-RAD and the substituent effect of the rest of the molecule is studied at R(O)MP2/6-311+G(3df,2p) provides an accurate low-cost alternative to G3(MP2)-RAD for larger molecules.
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25
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Vargas R, Garza J, Cedillo A. Koopmans-like approximation in the Kohn-Sham method and the impact of the frozen core approximation on the computation of the reactivity parameters of the density functional theory. J Phys Chem A 2007; 109:8880-92. [PMID: 16834292 DOI: 10.1021/jp052111w] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
A Koopmans-like approximation is introduced in the spin-polarized version of the Kohn-Sham (KS) density functional theory to obtain a relation between KS orbital energies and vertical ionization potential and electron affinity. Expressions for reactivity indexes (like electronegativity, hardness, electrophilicity, and excitation energies) include KS frontier orbital energies and additional contributions associated with the self-interaction correction. Those reactivity parameters were computed with different exchange-correlation functionals to test the approach for a set of small molecules. The results show that the present approximation provides a better way to estimate hardness, electronegativity, and electrophilicity than just the use of frontier orbital energy values. However KS HOMO and LUMO energy gap gives a better agreement with excitation energies.
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Affiliation(s)
- Rubicelia Vargas
- Departamento de Química, Universidad Autónoma Metropolitana Iztapalapa, Apartado Postal 55-534, San Rafael Atlixco 186, Col. Vicentina. Del. Iztapalapa. C.P. 09340. México, D.F. México.
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26
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Hill LL, Moore LR, Huang R, Craciun R, Vincent AJ, Dixon DA, Chou J, Woltermann CJ, Shaughnessy KH. Bulky alkylphosphines with neopentyl substituents as ligands in the amination of aryl bromides and chlorides. J Org Chem 2007; 71:5117-25. [PMID: 16808497 DOI: 10.1021/jo060303x] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Di(tert-butyl)neopentylphosphine (DTBNpP) in combination with palladium sources provided catalysts with comparable or better activity for the Hartwig-Buchwald amination of aryl bromides than tri(tert-butyl)phosphine (TTBP) under mild conditions. DTBNpP also provided effective catalysts for amination reactions of aryl chlorides at elevated temperatures. Further replacement of tert-butyl groups with neopentyl substituents resulted in less effective ligands for amination reactions. Computationally derived cone angles showed that replacement of a tert-butyl group with a neopentyl group significantly increased the cone angle of the phosphine. The larger cone angle of DTBNpP than TTBP appears to correlate with the higher activity of catalysts derived from DTBNpP in the amination of aryl bromides. TTBP is a stronger electron donor than DTBNpP, which may explain the higher activity for TTBP-derived catalysts toward aryl chlorides.
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Affiliation(s)
- Lensey L Hill
- Department of Chemistry, University of Alabama, Box 870336, Tuscaloosa, AL 35487-0336, USA
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27
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Bartlett RJ, Schweigert IV, Lotrich VF. Ab initio DFT: Getting the right answer for the right reason. ACTA ACUST UNITED AC 2006. [DOI: 10.1016/j.theochem.2006.02.004] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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28
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Shumate WJ, Mattern DL, Jaiswal A, Dixon DA, White TR, Burgess J, Honciuc A, Metzger RM. Spectroscopy and Rectification of Three Donor−Sigma−Acceptor Compounds, Consisting of a One-Electron Donor (Pyrene or Ferrocene), a One-Electron Acceptor (Perylenebisimide), and a C19 Swallowtail. J Phys Chem B 2006; 110:11146-59. [PMID: 16771377 DOI: 10.1021/jp0575512] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
We report spectroscopic characterization and unimolecular rectification (asymmetric electrical conduction) measurements of three donor-sigma-acceptor (D-sigma-A) compounds N-(10-nonadecyl)-N-(1-pyrenylmethyl)perylene-3,4,9,10-bis(dicarboximide) (1), N-(10-nonadecyl)-N-(4-[1-pyrenyl]butyl)perylene-3,4,9,10-bis(dicarboximide) (2), and N-(10-nonadecyl)-N-(2-ferrocenylethyl)perylene-3,4,9,10-bis(dicarboximide) (3). These molecules were arranged as one-molecule thick Langmuir-Blodgett monolayers between Au electrodes. In such an "Au | D-sigma-A | Au" sandwich, molecule 1 is a unimolecular rectifier, with rather small rectification ratios (between 2 and 3 at +/-1 V) that decrease upon cycling. Molecule 2 does not rectify. Molecule 3 rectifies, with a rectification ratio of between 14 and 28 at +/-1 V; the through-film rectification and currents persist, even with scans of +/-2 V, for up to 40 cycles of measurement. Qualitative arguments, based on a two-level rectification mechanism, are consistent with the current asymmetries observed in the monolayers of 1 and 3.
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Affiliation(s)
- Walter J Shumate
- Laboratory for Molecular Electronics, Chemistry Department, University of Alabama, Tuscaloosa, Alabama 35487-0336, USA
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29
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Aquino N, Garza J, Flores-Riveros A, Rivas-Silva JF, Sen KD. Confined helium atom low-lying S states analyzed through correlated Hylleraas wave functions and the Kohn-Sham model. J Chem Phys 2006; 124:054311. [PMID: 16468873 DOI: 10.1063/1.2148948] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Calculation including the electron correlation effects is reported for the ground 1 1S and lowest triplet 1 3S state energies of the confined helium atom placed at the center of an impenetrable spherical box. While the adopted wave-functional treatment involves optimization of three nonlinear parameters and 10, 20, and 40 linear coefficients contained in wave functions expressed in a generalized Hylleraas basis set that explicitly incorporates the interelectronic distance r12, via a Slater-type exponent and through polynomial terms entering the expansion, the Kohn-Sham model employed here uses the Perdew and Wang exchange-correlation functional in its spin-polarized version within the local-density approximation (LDA) with and without the self-interaction correction. All these calculations predict a systematic increase in the singlet-triplet energy splitting toward the high confinement regime, i.e., when the box radius is reduced. By using the variational results as benchmark, it is found that the LDA underestimates the singlet-triplet energy splitting, whereas the self-interaction correction overestimates such a quantity.
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Affiliation(s)
- N Aquino
- Departamento de Física, Universidad Autónoma Metropolitana-Iztapalapa, Apartado Postal 55-534, 09340 México, Distrito Federal, México.
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30
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Vázquez-Mayagoitia Á, Vargas R, Nichols JA, Fuentealba P, Garza J. Relationship between singlet–triplet excitation energies and the Kohn–Sham orbitals obtained with potentials that exhibit a wrong asymptotic behavior. Chem Phys Lett 2006. [DOI: 10.1016/j.cplett.2005.11.075] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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31
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Waters T, Wang XB, Li S, Kiran B, Dixon DA, Wang LS. Electronic Structure of the Hydroxo and Methoxo Oxometalate Anions MO3(OH)- and MO3(OCH3)- (M = Cr, Mo, and W). J Phys Chem A 2005; 109:11771-80. [PMID: 16366627 DOI: 10.1021/jp054666x] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The electronic structure of the mononuclear hydroxo MO3(OH)- and methoxo MO3(OCH3)- Group 6 oxometalate anions (M = Cr, Mo, and W) were examined by photodetachment photoelectron spectroscopy and electronic structure calculations at the density functional and CCSD(T) levels of theory. All of the anions exhibited high electron binding energies (>4.9 eV), with the lowest-energy detachment features arising from oxygen 2p-based orbitals. The combined experimental and theoretical results allowed the change in molecular orbital energy levels to be investigated as a function of metal (Cr, Mo, or W) and ligand (-OH, -OCH3). A number of fundamental thermodynamic properties of the anions and corresponding neutrals were predicted on the basis of the theoretical calculations. The calculations indicate high O-H bond dissociation energies for MO2(OR)(O-H) (R = H, CH3) and MO3(O-H), consistent with their high Brønsted acidities (just below that of H2SO4 in the gas phase) and the high ionization energies of their conjugate base anions. This suggests that the corresponding radicals should readily abstract H atoms from organic molecules.
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Affiliation(s)
- Tom Waters
- W. R. Wiley Environmental Molecular Sciences Laboratory, Chemical Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MS-K88, Richland, Washington 99352, USA
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32
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Comparison between the frozen core and finite differences approximations for the generalized spin-dependent global and local reactivity descriptors in small molecules. Theor Chem Acc 2005. [DOI: 10.1007/s00214-005-0002-3] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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33
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Vydrov OA, Scuseria GE. Ionization potentials and electron affinities in the Perdew–Zunger self-interaction corrected density-functional theory. J Chem Phys 2005; 122:184107. [PMID: 15918694 DOI: 10.1063/1.1897378] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Using a self-consistent implementation of the Perdew-Zunger self-interaction corrected (PZ-SIC) density-functional theory, we have calculated ionization potentials (IP) and electron affinities (EA) of first- and second-row atoms and a set of small molecules. Several exchange-correlation functionals were tested. IPs and EAs were obtained by two methods: as the difference in self-consistent field (SCF) energies of neutrals and ions (deltaSCF) and as negatives of highest-occupied orbital energies. We found that, except for local spin-density approximation, PZ-SIC worsens DeltaSCF IPs and EAs. On the other hand, PZ-SIC brings orbital eigenvalues into much better agreement with electron removal energies. The Perdew-Zunger SIC seems to over-correct many-electron systems; for molecules it performs worse than for atoms. We also discuss several common approximations to PZ-SIC such as spherical averaging of orbital densities in atoms.
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Affiliation(s)
- Oleg A Vydrov
- Department of Chemistry, Rice University, Houston, Texas 77005, USA
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DeVasher RB, Spruell JM, Dixon DA, Broker GA, Griffin ST, Rogers RD, Shaughnessy KH. Experimental and Computational Study of Steric and Electronic Effects on the Coordination of Bulky, Water-Soluble Alkylphosphines to Palladium under Reducing Conditions: Correlation to Catalytic Activity. Organometallics 2005. [DOI: 10.1021/om049241w] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Rebecca B. DeVasher
- Department of Chemistry and Center for Green Manufacturing, The University of Alabama, Box 870336, Tuscaloosa, Alabama 35487-0336
| | - Jason M. Spruell
- Department of Chemistry and Center for Green Manufacturing, The University of Alabama, Box 870336, Tuscaloosa, Alabama 35487-0336
| | - David A. Dixon
- Department of Chemistry and Center for Green Manufacturing, The University of Alabama, Box 870336, Tuscaloosa, Alabama 35487-0336
| | - Grant A. Broker
- Department of Chemistry and Center for Green Manufacturing, The University of Alabama, Box 870336, Tuscaloosa, Alabama 35487-0336
| | - Scott T. Griffin
- Department of Chemistry and Center for Green Manufacturing, The University of Alabama, Box 870336, Tuscaloosa, Alabama 35487-0336
| | - Robin D. Rogers
- Department of Chemistry and Center for Green Manufacturing, The University of Alabama, Box 870336, Tuscaloosa, Alabama 35487-0336
| | - Kevin H. Shaughnessy
- Department of Chemistry and Center for Green Manufacturing, The University of Alabama, Box 870336, Tuscaloosa, Alabama 35487-0336
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35
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Matus MH, Garza J, Galván M. Basis set effects on frontier molecular orbital energies and energy gaps: A comparative study between plane waves and localized basis functions in molecular systems. J Chem Phys 2004; 120:10359-63. [PMID: 15268062 DOI: 10.1063/1.1738111] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In order to study the Kohn-Sham frontier molecular orbital energies in the complete basis limit, a comparative study between localized functions and plane waves, obtained with the local density approximation exchange-correlation functional is made. The analyzed systems are ethylene and butadiene, since they are theoretical and experimentally well characterized. The localized basis sets used are those developed by Dunning. For the plane-waves method, the pseudopotential approximation is employed. The results obtained by the localized basis sets suggest that it is possible to get an estimation of the orbital energies in the limit of the complete basis set, when the basis set size is large. It is shown that the frontier molecular orbital energies and the energy gaps obtained with plane waves are similar to those obtained with a large localized basis set, when the size of the supercell and the plane-wave expansion have been appropriately calibrated.
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Affiliation(s)
- Myrna H Matus
- Departamento de Química, Universidad Autónoma Metropolitana-Iztapalapa, A.P. 55-534, C.P. 09340, México D.F., México.
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Gräfenstein J, Kraka E, Cremer D. The impact of the self-interaction error on the density functional theory description of dissociating radical cations: Ionic and covalent dissociation limits. J Chem Phys 2004; 120:524-39. [PMID: 15267887 DOI: 10.1063/1.1630017] [Citation(s) in RCA: 120] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Self-interaction corrected density functional theory was used to determine the self-interaction error for dissociating one-electron bonds. The self-interaction error of the unpaired electron mimics nondynamic correlation effects that have no physical basis where these effects increase for increasing separation distance. For short distances the magnitude of the self-interaction error takes a minimum and increases then again for decreasing R. The position of the minimum of the magnitude of the self-interaction error influences the equilibrium properties of the one-electron bond in the radical cations H2+ (1), B2H4+ (2), and C2H6+ (3), which differ significantly. These differences are explained by hyperconjugative interactions in 2 and 3 that are directly reflected by the self-interaction error and its orbital contributions. The density functional theory description of the dissociating radical cations suffers not only from the self-interaction error but also from the simplified description of interelectronic exchange. The calculated differences between ionic and covalent dissociation for 1, 2, and 3 provide an excellent criterion for determining the basic failures of density functional theory, self-interaction corrected density functional theory, and other methods. Pure electronic, orbital relaxation, and geometric relaxation contributions to the self-interaction error are discussed. The relevance of these effects for the description of transition states and charge transfer complexes is shown. Suggestions for the construction of new exchange-correlation functionals are given. In this connection, the disadvantages of recently suggested self-interaction error-free density functional theory methods are emphasized.
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Affiliation(s)
- Jürgen Gräfenstein
- Department of Theoretical Chemistry, Göteborg University, Box 460, SE-403 50 Göteborg, Sweden
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Gräfenstein J, Kraka E, Cremer D. Effect of the self-interaction error for three-electron bonds: On the development of new exchange-correlation functionals. Phys Chem Chem Phys 2004. [DOI: 10.1039/b311840a] [Citation(s) in RCA: 102] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
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Vydrov OA, Scuseria GE. Effect of the Perdew–Zunger self-interaction correction on the thermochemical performance of approximate density functionals. J Chem Phys 2004; 121:8187-93. [PMID: 15511137 DOI: 10.1063/1.1794633] [Citation(s) in RCA: 111] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The Perdew-Zunger self-interaction-corrected density functional theory (SIC-DFT) was implemented self-consistently using a quasi-Newton direct minimization method. We calculated SIC-DFT energies for a number of atoms and molecules using various approximate density functionals, including hybrids. Self-interaction errors (SIE) of these functionals were compared and analyzed in terms of contributions from valence and core orbitals. We also calculated enthalpies of formation of the standard G2-1 set of 55 molecules and found that self-interaction-correction (SIC) improves agreement with experiment only for the LSDA functional, while all other functionals show worse performance upon introducing SIC. This is the first systematic study of the effect of SIC on thermochemical properties. We found no direct connection between the magnitude of the SIE contained in a functional and its performance for thermochemistry. Approximate functionals with large self-interaction errors can accurately reproduce enthalpies of formation. Our results do not support the popular belief that a smaller SIE of hybrid functionals is the main reason for their higher accuracy.
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Affiliation(s)
- Oleg A Vydrov
- Department of Chemistry, Rice University, Houston, TX 77005, USA
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Zhan CG, Dixon DA, Matsuzawa NN, Ishitani A, Uda T. Time-dependent density functional theory calculations of the photoabsorption of fluorinated alkanes. J Fluor Chem 2003. [DOI: 10.1016/s0022-1139(03)00077-0] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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40
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González I, González C, Karasiev VV, Ludeña EV, Hernández AJ. Basis set dependent SCα exchange-only and exchange-correlation calculations. J Chem Phys 2003. [DOI: 10.1063/1.1564813] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Zhan CG, Nichols JA, Dixon DA. Ionization Potential, Electron Affinity, Electronegativity, Hardness, and Electron Excitation Energy: Molecular Properties from Density Functional Theory Orbital Energies. J Phys Chem A 2003. [DOI: 10.1021/jp0225774] [Citation(s) in RCA: 913] [Impact Index Per Article: 43.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chang-Guo Zhan
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352
| | - Jeffrey A. Nichols
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352
| | - David A. Dixon
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352
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Zhan CG, Spencer P, Dixon DA. Computational Insights into the Chemical Structures and Mechanisms of the Chromogenic and Neurotoxic Effects of Aromatic γ-diketones. J Phys Chem B 2003. [DOI: 10.1021/jp0221486] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chang-Guo Zhan
- Theory, Modeling & Simulation, William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352, and Center for Research on Occupational and Environmental Toxicology, Oregon Health Sciences University, 3181 Southwest Sam Jackson Park Road L606, Portland, Oregon 97201
| | - Peter Spencer
- Theory, Modeling & Simulation, William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352, and Center for Research on Occupational and Environmental Toxicology, Oregon Health Sciences University, 3181 Southwest Sam Jackson Park Road L606, Portland, Oregon 97201
| | - David A. Dixon
- Theory, Modeling & Simulation, William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352, and Center for Research on Occupational and Environmental Toxicology, Oregon Health Sciences University, 3181 Southwest Sam Jackson Park Road L606, Portland, Oregon 97201
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Tasnádi F, Nagy Á. Local self-interaction-free approximate exchange-correlation potentials in the variational density functional theory for individual excited states. Chem Phys Lett 2002. [DOI: 10.1016/s0009-2614(02)01612-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Zhan CG, Dixon DA. A Density Functional Theory Approach to the Development of Q−e Parameters for the Prediction of Reactivity in Free-Radical Copolymerizations. J Phys Chem A 2002. [DOI: 10.1021/jp020497u] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Chang-Guo Zhan
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352
| | - David A. Dixon
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MS K1-83, P.O. Box 999, Richland, Washington 99352
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Patchkovskii S, Ziegler T. Improving “difficult” reaction barriers with self-interaction corrected density functional theory. J Chem Phys 2002. [DOI: 10.1063/1.1468640] [Citation(s) in RCA: 122] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Hirata S, Ivanov S, Grabowski I, Bartlett RJ. Time-dependent density functional theory employing optimized effective potentials. J Chem Phys 2002. [DOI: 10.1063/1.1460869] [Citation(s) in RCA: 92] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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ALLEN MARKJ, TOZER DAVIDJ. Eigenvalues, integer discontinuities and NMR shielding constants in Kohn—Sham theory. Mol Phys 2002. [DOI: 10.1080/00268970110078335] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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48
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Patchkovskii S, Ziegler T. Phosphorus NMR Chemical Shifts with Self-Interaction Free, Gradient-Corrected DFT. J Phys Chem A 2002. [DOI: 10.1021/jp014184v] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Serguei Patchkovskii
- Steacie Institute for Molecular Sciences, 100 Sussex Dr., Ottawa, Ontario, K1A 0R6 Canada, and Department of Chemistry, University of Calgary, 2500 University Dr. NW, Calgary, Alberta, T2N 1N4 Canada
| | - Tom Ziegler
- Steacie Institute for Molecular Sciences, 100 Sussex Dr., Ottawa, Ontario, K1A 0R6 Canada, and Department of Chemistry, University of Calgary, 2500 University Dr. NW, Calgary, Alberta, T2N 1N4 Canada
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Matsuzawa NN, Ishitani A, Dixon DA, Uda T. Time-Dependent Density Functional Theory Calculations of Photoabsorption Spectra in the Vacuum Ultraviolet Region. J Phys Chem A 2001. [DOI: 10.1021/jp003937v] [Citation(s) in RCA: 210] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nobuyuki N. Matsuzawa
- Atsugi Research Center, Association of Super-advanced Electronics Technologies (ASET), c/o NTT Atsugi Research and Development Center, 3-1 Morinosato-Wakamiya, Atsugi 243-0198, Japan
| | - Akihiko Ishitani
- Atsugi Research Center, Association of Super-advanced Electronics Technologies (ASET), c/o NTT Atsugi Research and Development Center, 3-1 Morinosato-Wakamiya, Atsugi 243-0198, Japan
| | - David A. Dixon
- William R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, MSIN: K1-83, P.O. Box 999, 902 Battelle Boulevard, Richland, Washington 99352
| | - Tsuyoshi Uda
- Joint Research Center for Atom Technology (JRCAT), Angstrom Technology Partnership, c/o National Institute for Advanced Interdisciplinary Research, 1-1-4 Higashi, Tsukuba 305-0046, Japan
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