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Ueta H, Gleeson MA, Kleyn AW. The interaction of hyperthermal argon atoms with CO-covered Ru(0001): Scattering and collision-induced desorption. J Chem Phys 2011; 134:064706. [DOI: 10.1063/1.3545974] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Lümmen N. ReaxFF-molecular dynamics simulations of non-oxidative and non-catalyzed thermal decomposition of methane at high temperatures. Phys Chem Chem Phys 2010; 12:7883-93. [DOI: 10.1039/c003367g] [Citation(s) in RCA: 51] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Alexander WA, Troya D. Theoretical Study of the Ar−, Kr−, and Xe−CH4, −CF4 Intermolecular Potential-Energy Surfaces. J Phys Chem A 2006; 110:10834-43. [PMID: 16970379 DOI: 10.1021/jp063398f] [Citation(s) in RCA: 34] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present a theoretical study of the intermolecular potentials for the Ar, Kr, and Xe-CH4, -CF4 systems. The potential-energy surfaces of these systems have been calculated utilizing second-order Möller-Plesset perturbation theory and coupled-cluster theory in combination with correlation-consistent basis sets (aug-cc-pvnz; n = d, t, q). The calculations show that the stabilizing interactions between the rare gases and the molecules are slightly larger for CF4 than for CH4. Moreover, the rare-gas-CX4 (X = H, F) potentials are more attractive for Xe than for Kr and Ar. Our highest quality ab initio data (focal-point-CCSD(T) extrapolated to the complete basis set limit) have been used to develop pairwise analytical potentials for rare-gas-hydrocarbon (-fluorocarbon) systems. These potentials can be applied in classical-trajectory studies of rare gases interacting with hydrocarbon surfaces.
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Marques JMC, Martínez-Núñez E, Vazquez SA. Trajectory dynamics study of collision-induced dissociation of the Ar + CH4 reaction at hyperthermal conditions: vibrational excitation and isotope substitution. J Phys Chem A 2006; 110:7113-21. [PMID: 16737261 DOI: 10.1021/jp0611929] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
We investigate the role of vibrational energy excitation of methane and two deuterated species (CD(4) and CH(2)D(2)) in the collision-induced dissociation (CID) process with argon at hyperthermal energies. The quasi-classical trajectory method has been applied, and the reactive Ar + CH(4) system has been modeled by using a modified version of the CH(4) potential energy surface of Duchovic et al. (J. Phys. Chem. 1984, 88, 1339) and the Ar-CH(4) intermolecular potential function obtained by Troya (J. Phys. Chem. A 2005, 109, 5814). This study clearly shows that CID is markedly enhanced with vibrational excitation and, to a lesser degree, with collision energy. In general, CID increases by exciting stretch vibrational modes of the reactant molecule. For the direct dissociation of CH(4), however, the CID cross sections appear to be essentially independent of which vibrational mode is initially excited. In all situations studied, the CID cross sections are always greater for the Ar + CD(4) reaction than for the Ar + CH(4) one, the Ar + CH(2)D(2) being an intermediate situation. A detailed analysis of the energy transfer processes, including their relation with CID, is also presented.
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Affiliation(s)
- J M C Marques
- Departamento de Química, Universidade de Coimbra, Portugal.
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Vayner G, Alexeev Y, Wang J, Windus TL, Hase WL. Ab initio and analytic intermolecular potentials for Ar-CF4. J Phys Chem A 2006; 110:3174-8. [PMID: 16509641 DOI: 10.1021/jp054592p] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
Ab initio calculations at the CCSD(T) level of theory were performed to characterize the Ar + CF4 intermolecular potential. Potential energy curves were calculated with the aug-cc-pVTZ basis set, and with and without a correction for basis set superposition error (BSSE). Additional calculations were performed with other correlation consistent basis sets to extrapolate the Ar-CF4 potential energy minimum to the complete basis set (CBS) limit. Both the size of the basis set and BSSE have substantial effects on the Ar + CF4 potential. Calculations with the aug-cc-pVTZ basis set, and with a BSSE correction, appear to give a good representation of the BSSE corrected potential at the CBS limit. In addition, MP2 theory is found to give potential energies in very good agreement with those determined by the much higher level CCSD(T) theory. Two model analytic potential energy functions were determined for Ar + CF4. One is a fit to the aug-cc-pVTZ calculations with a BSSE correction. The second was derived by fitting an average BSSE corrected potential, which is an average of the CCSD(T)/aug-cc-pVTZ potentials with and without a BSSE correction. These analytic functions are written as a sum of two-body potentials and excellent fits to the ab initio potentials are obtained by representing each two-body interaction as a Buckingham potential.
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Affiliation(s)
- Grigoriy Vayner
- Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington 99352, USA
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Day BS, Morris JR, Alexander WA, Troya D. Theoretical Study of the Effect of Surface Density on the Dynamics of Ar + Alkanethiolate Self-Assembled Monolayer Collisions. J Phys Chem A 2005; 110:1319-26. [PMID: 16435792 DOI: 10.1021/jp054043j] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
We present a classical-trajectory study of energy transfer in collisions of Ar atoms with alkanethiolate self-assembled monolayers (SAMs) of different densities. The density of the SAMs is varied by changing the distance between the alkanethiolate chains in the organic monolayers. Our calculations indicate that SAMs with smaller packing densities absorb more energy from the impinging Ar atoms, in agreement with recent molecular-beam scattering experiments. We find that energy transfer is enhanced by a decrease in the SAM density because (1) less dense SAMs increase the probability of multiple encounters between Ar and the SAM, (2) the vibrational frequencies of large-amplitude motions of the SAM chains decrease for less dense SAMs, which makes energy transfer more efficient in single-encounter collisions, and (3) increases in the distance between chains promote surface penetration of the Ar atom. Analysis of angular distributions reveals that the polar-angle distributions do not have a cosine shape in trapping-desorption processes involving penetration of the Ar atom into the alkanethiolate self-assembled monolayers. Instead, there is a preference for Ar atoms that penetrate the surface to desorb along the chain-tilt direction.
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Affiliation(s)
- B Scott Day
- Department of Chemistry, Virginia Tech, 107 Davidson Hall, Blacksburg, Virginia 24061-0212, USA
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Troya D. Quasiclassical trajectory study of energy transfer and collision-induced dissociation in hyperthermal Ar + CH4 and Ar + CF4 collisions. J Phys Chem A 2005; 109:5814-24. [PMID: 16833915 DOI: 10.1021/jp051808e] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We present a study of energy transfer in collisions of Ar with methane and perfluoromethane at hyperthermal energies (E(coll) = 4-10 eV). Quasiclassical trajectory calculations of Ar + CX(4) (X = H, F) collisions indicate that energy transfer from reagents' translation to internal modes of the alkane molecule is greatly enhanced by fluorination. The reasons for the enhancement of energy transfer upon fluorination are shown to emerge from a decrease in the hydrocarbon vibrational frequencies of the CX(4) molecule with increasing the mass of the X atom, and to an increase of the steepness of the Ar-CX(4) intermolecular potential. At high collision energies, we find that the cross section of Ar + CF(4) collisions in which the amount of energy transfer is larger than needed to break a C-F bond is at least 1 order of magnitude larger than the cross sections of Ar + CH(4) collisions producing CH(4) with energy above the dissociation limit. In addition, collision-induced dissociation is detected in short time scales in the case of the fluorinated species at E(coll) = 10 eV. These results suggest that the cross section for degradation of fluorinated hydrocarbon polymers under the action of nonreactive hyperthermal gas-phase species might be significantly larger than that of hydrogenated hydrocarbon polymers. We also illustrate a practical way to derive intramolecular potential energy surfaces for bond-breaking collisions by improving semiempirical Hamiltonians based on grids of high-quality ab initio calculations.
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Affiliation(s)
- Diego Troya
- Department of Chemistry, Virginia Tech, Davidson Hall 107, Blacksburg, Virginia 24061-0212, USA.
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Marques JMC, Martínez-Núñez E, Fernandez-Ramos A, Vazquez SA. Trajectory Dynamics Study of the Ar + CH4Dissociation Reaction at High Temperatures: the Importance of Zero-Point-Energy Effects. J Phys Chem A 2005; 109:5415-23. [PMID: 16839068 DOI: 10.1021/jp044707+] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Large-scale classical trajectory calculations have been performed to study the reaction Ar + CH4--> CH3 +H + Ar in the temperature range 2500 < or = T/K < or = 4500. The potential energy surface used for ArCH4 is the sum of the nonbonding pairwise potentials of Hase and collaborators (J. Chem. Phys. 2001, 114, 535) that models the intermolecular interaction and the CH4 intramolecular potential of Duchovic et al. (J. Phys. Chem. 1984, 88, 1339), which has been modified to account for the H-H repulsion at small bending angles. The thermal rate coefficient has been calculated, and the zero-point energy (ZPE) of the CH3 product molecule has been taken into account in the analysis of the results; also, two approaches have been applied for discarding predissociative trajectories. In both cases, good agreement is observed between the experimental and trajectory results after imposing the ZPE of CH3. The energy-transfer parameters have also been obtained from trajectory calculations and compared with available values estimated from experiment using the master equation formalism; in general, the agreement is good.
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Affiliation(s)
- J M C Marques
- Departamento de Química, Universidade de Coimbra, 3004-535 Coimbra, Portugal.
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Scott Day B, Morris JR, Troya D. Classical trajectory study of collisions of Ar with alkanethiolate self-assembled monolayers: Potential-energy surface effects on dynamics. J Chem Phys 2005; 122:214712. [PMID: 15974767 DOI: 10.1063/1.1924543] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
We have investigated collisions between Ar and alkanethiolate self-assembled monolayers (SAMs) using classical trajectory calculations with several potential-energy surfaces. The legitimacy of the potential-energy surfaces is established through comparison with molecular-beam data and ab initio calculations. Potential-energy surfaces used in previous work overestimate the binding of Ar to the SAM, leading to larger energy transfer than found in the experiments. New calculations, based on empirical force fields that better reproduce ab initio calculations, exhibit improved agreement with the experiments. In particular, polar-angle-dependent average energies calculated with explicit-atom potential-energy surfaces are in excellent agreement with the experiments. Polar- and azimuthal-angle-dependent product translational energies are examined to gain deeper insight into the dynamics of Ar+SAM collisions.
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Affiliation(s)
- B Scott Day
- Department of Chemistry, Virginia Tech, 107 Davidson Hall, Blacksburg, Virginia 24061-0212, USA
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Sun L, Peterson KA, Alexeev Y, Windus T, Kindt J, Hase WL. Effect of the Ar–Ni(s) potential on the cross section for Ar+CH4/Ni{111} collision-induced desorption and the need for a more accurate CH4/Ni{111} potential. J Chem Phys 2005; 122:44704. [PMID: 15740280 DOI: 10.1063/1.1829993] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In a previous paper [L. Sun, P. de Sainte Claire, O. Meroueh, and W. L Hase, J. Chem. Phys. 114, 535 (2001)], a classical trajectory simulation was reported of CH(4) desorption from Ni{111} by Ar-atom collisions. At an incident angle theta(i) of 60 degrees (with respect to the surface normal), the calculated collision-induced desorption (CID) cross sections are in excellent agreement with experiment. However, for smaller incident angles the calculated cross sections are larger than the experimental values and for normal collisions, theta(i)=0 degrees , the calculated cross sections are approximately a factor of 2 larger. This trajectory study used an analytic function for the Ar+Ni(s) intermolecular potential which gives an Ar-Ni{111} potential energy minimum which is an order of magnitude too deep. In the work reported here, the previous trajectory study is repeated with an Ar+Ni(s) analytic intermolecular potential which gives an accurate Ar-Ni{111} potential energy minimum and also has a different surface corrugation than the previous potential. Though there are significant differences between the two Ar+Ni(s) analytic potentials, they have no important effects on the CID dynamics and the cross sections reported here are nearly identical to the previous values. Zero-point energy motions of the surface and the CH(4)-Ni(s) intermolecular modes are considered in the simulation and they are found to have a negligible effect on the CID cross sections. Calculations of the intermolecular potential between CH(4) and a Ni atom, at various levels of theory, suggest that there are substantial approximations in the ab initio calculation used to develop the CH(4)+Ni{111} potential. The implication is that the differences between the trajectory and experimental CID cross sections may arise from an inaccurate CH(4)+Ni{111} potential used in the trajectory simulation.
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Affiliation(s)
- Lipeng Sun
- Department of Chemistry, Northwestern University, Evanston, IL 60208-3113, USA
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Brunsvold AL, Garton DJ, Minton TK, Troya D, Schatz GC. Crossed beams and theoretical studies of the dynamics of hyperthermal collisions between Ar and ethane. J Chem Phys 2004; 121:11702-14. [PMID: 15634136 DOI: 10.1063/1.1815271] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Crossed molecular beams experiments and classical trajectory calculations have been used to study the dynamics of Ar+ethane collisions at hyperthermal collision energies. Experimental time-of-flight and angular distributions of ethane molecules that scatter into the backward hemisphere (with respect to their original direction in the center-of-mass frame) have been collected. Translational energy distributions, derived from the time-of-flight distributions, reveal that a substantial fraction of the collisions transfer abnormally large amounts of energy to internal excitation of ethane. The flux of the scattered ethane molecules increased only slightly from directly backward scattering to sideways scattering. Theoretical calculations show angular and translational energy distributions which are in reasonable agreement with the experimental results. These calculations have been used to examine the microscopic mechanism for large energy transfer collisions ("supercollisions"). Collinear ("head-on") or perpendicular ("side-on") approaches of Ar to the C-C axis of ethane do not promote energy transfer as much as bent approaches, and collisions in which the H atom is "sandwiched" in a bent Ar...H-C configuration lead to the largest energy transfer. The sensitivity of collisional energy transfer to the intramolecular potential energy of ethane has also been examined.
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Affiliation(s)
- Amy L Brunsvold
- Department of Chemistry and Biochemistry, Montana State University, Bozeman, Montana 59717, USA
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Troya * D, Schatz † GC. Hyperthermal chemistry in the gas phase and on surfaces: theoretical studies. INT REV PHYS CHEM 2004. [DOI: 10.1080/0144235042000298484] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Yan T, Hase WL, Tully JC. A washboard with moment of inertia model of gas-surface scattering. J Chem Phys 2004; 120:1031-43. [PMID: 15267940 DOI: 10.1063/1.1628674] [Citation(s) in RCA: 53] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
A washboard with moment of inertia (WBMI) model for gas atom scattering from a flexible surface is proposed and applied. This model is a direct extension of the washboard model [J. Chem. Phys. 92, 680 (1990)] proposed for gas atom scattering from relatively rigid, corrugated surfaces. In addition, a moment of inertia is incorporated in the original washboard model to describe the flexibility of softer, more highly corrugated surfaces such as polymer or liquid surfaces. The moment of inertia of the effective surface object introduces a dependence of the efficiency of energy transfer on the position and direction of impact, a feature that has been shown to be critical by molecular dynamics simulations. The WBMI model is solved numerically by Monte Carlo integration, which makes the implementation of multiple impacts between a colliding atom and the surface very efficient. The model is applied to Ne and Ar atoms scattering from an alkylthiolate self-assembled monolayer surface and reproduces the major results obtained by classical trajectory simulation of the same system, i.e., a bimodal translation energy distribution P(E(f)) with the low-energy component well-fit with a Boltzmann distribution, but with a temperature that may (Ar) or may not (Ne) be the same as the surface temperature. This indicates that the WBMI model, with well-motivated physical assumptions and simplified interaction, reveals many of the major aspects of the gas-surface collision dynamics, though it does not take into account the real-time dynamics explicitly.
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Affiliation(s)
- Tianying Yan
- Department of Chemistry and Department of Computer Science, Wayne State University, Detroit, Michigan 48202, USA
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