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Lozano AI, Álvarez L, García-Abenza A, Guerra C, Kossoski F, Rosado J, Blanco F, Oller JC, Hasan M, Centurion M, Weber T, Slaughter DS, Mootheril DM, Dorn A, Kumar S, Limão-Vieira P, Colmenares R, García G. Electron Scattering from 1-Methyl-5-Nitroimidazole: Cross-Sections for Modeling Electron Transport through Potential Radiosensitizers. Int J Mol Sci 2023; 24:12182. [PMID: 37569557 PMCID: PMC10418670 DOI: 10.3390/ijms241512182] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2023] [Revised: 07/26/2023] [Accepted: 07/27/2023] [Indexed: 08/13/2023] Open
Abstract
In this study, we present a complete set of electron scattering cross-sections from 1-Methyl-5-Nitroimidazole (1M5NI) molecules for impact energies ranging from 0.1 to 1000 eV. This information is relevant to evaluate the potential role of 1M5NI as a molecular radiosensitizers. The total electron scattering cross-sections (TCS) that we previously measured with a magnetically confined electron transmission apparatus were considered as the reference values for the present analysis. Elastic scattering cross-sections were calculated by means of two different schemes: The Schwinger multichannel (SMC) method for the lower energies (below 15 eV) and the independent atom model-based screening-corrected additivity rule with interferences (IAM-SCARI) for higher energies (above 15 eV). The latter was also applied to calculate the total ionization cross-sections, which were complemented with experimental values of the induced cationic fragmentation by electron impact. Double differential ionization cross-sections were measured with a reaction microscope multi-particle coincidence spectrometer. Using a momentum imaging spectrometer, direct measurements of the anion fragment yields and kinetic energies by the dissociative electron attachment are also presented. Cross-sections for the other inelastic channels were derived with a self-consistent procedure by sampling their values at a given energy to ensure that the sum of the cross-sections of all the scattering processes available at that energy coincides with the corresponding TCS. This cross-section data set is ready to be used for modelling electron-induced radiation damage at the molecular level to biologically relevant media containing 1M5NI as a potential radiosensitizer. Nonetheless, a proper evaluation of its radiosensitizing effects would require further radiobiological experiments.
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Affiliation(s)
- Ana I. Lozano
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas-CSIC, Serrano 113-bis, 28006 Madrid, Spain or (A.I.L.); (L.Á.); (A.G.-A.); (C.G.)
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal (P.L.-V.)
| | - Lidia Álvarez
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas-CSIC, Serrano 113-bis, 28006 Madrid, Spain or (A.I.L.); (L.Á.); (A.G.-A.); (C.G.)
| | - Adrián García-Abenza
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas-CSIC, Serrano 113-bis, 28006 Madrid, Spain or (A.I.L.); (L.Á.); (A.G.-A.); (C.G.)
| | - Carlos Guerra
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas-CSIC, Serrano 113-bis, 28006 Madrid, Spain or (A.I.L.); (L.Á.); (A.G.-A.); (C.G.)
| | - Fábris Kossoski
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, 31062 Toulouse, France;
| | - Jaime Rosado
- Departamento de Estructura de la Materia, Física Térmica y Electrónica e IPARCOS, Universidad Complutense de Madrid, Avenida Complutense, 28040 Madrid, Spain; (J.R.); (F.B.)
| | - Francisco Blanco
- Departamento de Estructura de la Materia, Física Térmica y Electrónica e IPARCOS, Universidad Complutense de Madrid, Avenida Complutense, 28040 Madrid, Spain; (J.R.); (F.B.)
| | - Juan Carlos Oller
- Centro de Investigaciones Energéticas Medioambientales y Tecnológicas (CIEMAT), Avenida Complutense 22, 28040 Madrid, Spain;
| | - Mahmudul Hasan
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (M.H.); (T.W.); (D.S.S.)
- Department of Physics and Astronomy, University of Nebraska-Lincoln, Lincoln, NE 68588, USA;
| | - Martin Centurion
- Department of Physics and Astronomy, University of Nebraska-Lincoln, Lincoln, NE 68588, USA;
| | - Thorsten Weber
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (M.H.); (T.W.); (D.S.S.)
| | - Daniel S. Slaughter
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (M.H.); (T.W.); (D.S.S.)
| | | | - Alexander Dorn
- Max Planck Institute for Nuclear Physics, 69117 Heidelberg, Germany; (D.M.M.)
| | - Sarvesh Kumar
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal (P.L.-V.)
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720, USA; (M.H.); (T.W.); (D.S.S.)
| | - Paulo Limão-Vieira
- Laboratório de Colisões Atómicas e Moleculares, CEFITEC, Departamento de Física, Universidade NOVA de Lisboa, 2829-516 Caparica, Portugal (P.L.-V.)
| | - Rafael Colmenares
- Servicio de Radiofísica, IRYCIS-Hospital Universitario Ramón y Cajal, Carretera de Colmenar Viejo Km. 9.100, 28034 Madrid, Spain
| | - Gustavo García
- Instituto de Física Fundamental, Consejo Superior de Investigaciones Científicas-CSIC, Serrano 113-bis, 28006 Madrid, Spain or (A.I.L.); (L.Á.); (A.G.-A.); (C.G.)
- Centre for Medical Radiation Physics, University of Wollongong, Wollongong, NSW 2522, Australia
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Graves V, Cooper B, Tennyson J. The efficient calculation of electron impact ionization cross sections with effective core potentials. J Chem Phys 2021; 154:114104. [DOI: 10.1063/5.0039465] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Vincent Graves
- Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom
| | - Bridgette Cooper
- Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London, London WC1E 6BT, United Kingdom
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Kumar R, Pal S. Evaluation of electron ionization cross-sections of methyl halides. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2013; 27:223-237. [PMID: 23239337 DOI: 10.1002/rcm.6433] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2012] [Revised: 10/02/2012] [Accepted: 10/08/2012] [Indexed: 06/01/2023]
Abstract
RATIONALE Electron collision with methyl halides CH(3)X (X = F, Cl, Br) plays an important role in various atmospheric and plasma modelling processes. The gaseous methyl halides are harmful to the troposphere and the stratospheric ozone layer. Knowledge of the ionization cross sections and ionization rate coefficients of the free gaseous halides is therefore desirable in the study of these processes. METHODS The partial single and double differential cross-sections with the integral ionization cross-sections of the gaseous halides by electron collision were calculated using a modified Jain-Khare semi-empirical approach. The ionization rate coefficients corresponding to partial ionization cross-sections were calculated by the Maxwell-Boltzmann distribution of energy. RESULTS The Jain-Khare formalism has different approaches for the evaluation of single differential, double differential and integral ionization cross-sections. The partial single differential cross-sections as a function of energy loss (sum of ionization threshold and the secondary electron energy) suffered by the incident electron were calculated at incident electron energies of 100 and 200 eV. The double differential cross-sections were computed at the same electron energies and scattering angles of 30° and 60°. The behavior of double differential cross-sections with scattering angles from 0° to 180° at constant secondary electron energies of 10 and 20 eV and fixed primary electron energies 100 and 200 eV was also calculated. The partial and total (sum of all partial cross-sections) integral ionization cross-sections were evaluated from the ionization threshold to 1000 eV. CONCLUSIONS The applied formalism is useful for the calculation of partial and total integral/or differential cross-sections at low energies. The integral ionization cross-sections showed good agreement with available experimental/or theoretical data. The data obtained for these compounds were not previously available, so the results will be of value to the experimental and theoretical community concerned with plasma and atmospheric processes.
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Affiliation(s)
- Rajeev Kumar
- Department of Physics, D. J. College, Baraut (Baghpat), UP, India, 250611.
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Bull JN, Harland PW, Vallance C. Absolute Total Electron Impact Ionization Cross-Sections for Many-Atom Organic and Halocarbon Species. J Phys Chem A 2011; 116:767-77. [DOI: 10.1021/jp210294p] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- James N. Bull
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom
| | - Peter W. Harland
- Department of Chemistry, University of Canterbury, Private Bag 4800, Christchurch 8140, New Zealand
| | - Claire Vallance
- Chemistry Research Laboratory, Department of Chemistry, University of Oxford, 12 Mansfield Road, Oxford OX1 3TA, United Kingdom
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Peudon A, Edel S, Terrissol M. Molecular basic data calculation for radiation transport in chromatin. RADIATION PROTECTION DOSIMETRY 2006; 122:128-35. [PMID: 17166876 DOI: 10.1093/rpd/ncl452] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/13/2023]
Abstract
Differential and integral electron impact ionisation cross sections were calculated using the binary-encounter-Bethe theoretical model for each core particle molecules: the four DNA bases, the backbone (sugar phosphate), and the 19 amino acids constituent of histone proteins. The binding energies and populations of molecular orbitals were computed using General Atomic Molecular Electronic Structure System. At present, there are neither experimental nor other theoretical results on amino acid electron impact ionisation cross sections. Regarding DNA bases and backbone, our results show good agreement with those published in journals.
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Affiliation(s)
- Aude Peudon
- CPAT, Université Paul Sabatier, 118 route de Narbonne, 31062 Toulouse Cédex 9, France.
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Martínez R, Sierra B, Redondo C, Rayo MNS, Castaño F. Absolute electron-impact total ionization cross sections of chlorofluoromethanes. J Chem Phys 2004; 121:11653-60. [PMID: 15634131 DOI: 10.1063/1.1808413] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
An experimental study is reported on the electron-impact total ionization cross sections (TICSs) of CCl4, CCl3F, CCl2F2, and CClF3 molecules. The kinetic energy of the colliding electrons was in the 10-85 eV range. TICSs were obtained as the sum of the partial ionization cross sections of all fragment ions, measured and identified in a linear double focusing time-of-flight mass spectrometer. The resulting TICS profiles--as a function of the electron-impact energy--have been compared both with those computed by ab initio and (semi)empirical methods and with the available experimental data. The computational methods used include the binary-encounter-Bethe (BEB) modified to include atoms with principal quantum numbers n> or =3, the Deutsch and Märk (DM) formalism, and the modified additivity rule (MAR). It is concluded that both modified BEB and DM methods fit the experimental TICS for (CF4), CClF3, CCl2F2, CCl3F, and CCl4 to a high accuracy, in contrast with the poor accord of the MAR method. A discussion on the factors influencing the discrepancies of the fittings is presented.
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Affiliation(s)
- Roberto Martínez
- Facultad de Farmacia, Departamento de Química Física, Paseo de la Universidad, 7, 01006 Vitoria, Spain
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