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Marjollet A, Inhester L, Welsch R. Initial state-selected scattering for the reactions H + CH4/CHD3 and F + CHD3 employing ring polymer molecular dynamics. J Chem Phys 2022; 156:044101. [DOI: 10.1063/5.0076216] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- A. Marjollet
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
- Department of Physics, Universität Hamburg, Notkestr. 9-11, 22607 Hamburg, Germany
| | - L. Inhester
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
| | - R. Welsch
- Center for Free-Electron Laser Science CFEL, Deutsches Elektronen-Synchrotron DESY, Notkestrasse 85, 22607 Hamburg, Germany
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2
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Rotenberg B. Use the force! Reduced variance estimators for densities, radial distribution functions, and local mobilities in molecular simulations. J Chem Phys 2020; 153:150902. [DOI: 10.1063/5.0029113] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Affiliation(s)
- Benjamin Rotenberg
- Sorbonne Université, CNRS, Physico-Chimie des électrolytes et Nanosystèmes Interfaciaux, F-75005 Paris, France
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3
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Pérez de Tudela R, Martini P, Goulart M, Scheier P, Pirani F, Hernández-Rojas J, Bretón J, Ortiz de Zárate J, Bartolomei M, González-Lezana T, Hernández MI, Campos-Martínez J, Villarreal P. A combined experimental and theoretical investigation of Cs + ions solvated in He N clusters. J Chem Phys 2019; 150:154304. [PMID: 31005067 DOI: 10.1063/1.5092566] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
Solvation of Cs+ ions inside helium droplets has been investigated both experimentally and theoretically. On the one hand, mass spectra of doped helium clusters ionized with a crossed electron beam, HeNCs+, have been recorded for sizes up to N = 60. The analysis of the ratio between the observed peaks for each size N reveals evidences of the closure of the first solvation shell when 17 He atoms surround the alkali ion. On the other hand, we have obtained energies and geometrical structures of the title clusters by means of basin-hopping, diffusion Monte Carlo (DMC), and path integral Monte Carlo (PIMC) methods. The analytical He-Cs+ interaction potential employed in our calculations is represented by the improved Lennard-Jones expression optimized on high level ab initio energies. The weakness of the existing interaction between helium and Cs+ in comparison with some other alkali ions such as Li+ is found to play a crucial role. Our theoretical findings confirm that the first solvation layer is completed at N = 17 and both evaporation and second difference energies obtained with the PIMC calculation seem to reproduce a feature observed at N = 12 for the experimental ion abundance. The analysis of the DMC probability distributions reveals the important contribution from the icosahedral structure to the overall configuration for He12Cs+.
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Affiliation(s)
| | - Paul Martini
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstr. 25, A-6020 Innsbruck, Austria
| | - Marcelo Goulart
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstr. 25, A-6020 Innsbruck, Austria
| | - Paul Scheier
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstr. 25, A-6020 Innsbruck, Austria
| | - Fernando Pirani
- Dipartimento di Chimica, Biologia e Biotecnologie, Universitá di Perugia, 06123 Perugia, Italy
| | - Javier Hernández-Rojas
- Departamento de Física and IUdEA, Universidad de La Laguna, La Laguna, 38205 Tenerife, Spain
| | - José Bretón
- Departamento de Física and IUdEA, Universidad de La Laguna, La Laguna, 38205 Tenerife, Spain
| | | | | | | | - Marta I Hernández
- Instituto de Física Fundamental, IFF-CSIC, Serrano 123, 28006 Madrid, Spain
| | | | - Pablo Villarreal
- Instituto de Física Fundamental, IFF-CSIC, Serrano 123, 28006 Madrid, Spain
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4
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Rodríguez-Cantano R, Bartolomei M, Hernández MI, Campos-Martínez J, González-Lezana T, Villarreal P, Pérez de Tudela R, Pirani F, Hernández-Rojas J, Bretón J. Comparative investigation of pure and mixed rare gas atoms on coronene molecules. J Chem Phys 2017; 146:034302. [DOI: 10.1063/1.4973890] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Affiliation(s)
| | | | - Marta I. Hernández
- Instituto de Física Fundamental, IFF-CSIC, Serrano 123, 28006 Madrid, Spain
| | | | | | - Pablo Villarreal
- Instituto de Física Fundamental, IFF-CSIC, Serrano 123, 28006 Madrid, Spain
| | | | - Fernando Pirani
- Dipartimento di Chimica, Biologia e Biotecnologie, Universitá di Perugia, 06123 Perugia, Italy
| | | | - José Bretón
- Departamento de Física and IUdEA, Universidad de La Laguna, 38205 Tenerife, Spain
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5
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Bartolomei M, Pérez de Tudela R, Arteaga K, González-Lezana T, Hernández MI, Campos-Martínez J, Villarreal P, Hernández-Rojas J, Bretón J, Pirani F. Adsorption of molecular hydrogen on coronene with a new potential energy surface. Phys Chem Chem Phys 2017; 19:26358-26368. [DOI: 10.1039/c7cp03819d] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Adsorption of molecular hydrogen on coronene studied with a new potential energy surface. Path integral Monte Carlo and basin-hopping calculations have been performed to investigate energies and structures of the corresponding (H2)N-coronene clusters.
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Affiliation(s)
| | | | - Kilian Arteaga
- Instituto de Física Fundamental
- IFF-CSIC
- 28006 Madrid
- Spain
| | | | | | | | | | | | - José Bretón
- Departamento de Física and IUdEA
- Universidad de La Laguna
- 38205 Tenerife
- Spain
| | - Fernando Pirani
- Dipartimento di Chimica
- Biologia e Biotecnologie
- Universitá di Perugia
- Perugia
- Italy
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6
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Vlasiuk M, Frascoli F, Sadus RJ. Molecular simulation of the thermodynamic, structural, and vapor-liquid equilibrium properties of neon. J Chem Phys 2016; 145:104501. [DOI: 10.1063/1.4961682] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
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7
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Rodríguez-Cantano R, Pérez de Tudela R, Bartolomei M, Hernández MI, Campos-Martínez J, González-Lezana T, Villarreal P, Hernández-Rojas J, Bretón J. Examination of the Feynman–Hibbs Approach in the Study of NeN-Coronene Clusters at Low Temperatures. J Phys Chem A 2016; 120:5370-9. [DOI: 10.1021/acs.jpca.6b01926] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
| | | | | | - Marta I. Hernández
- Instituto de Física Fundamental (IFF-CSIC), Serrano 123, 28006 Madrid, Spain
| | | | | | - Pablo Villarreal
- Instituto de Física Fundamental (IFF-CSIC), Serrano 123, 28006 Madrid, Spain
| | | | - José Bretón
- Departamento
de Física and Iudea, Universidad de la Laguna, 38203 Tenerife, Spain
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8
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Schultz AJ, Moustafa SG, Lin W, Weinstein SJ, Kofke DA. Reformulation of Ensemble Averages via Coordinate Mapping. J Chem Theory Comput 2016; 12:1491-8. [PMID: 26950263 DOI: 10.1021/acs.jctc.6b00018] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A general framework is established for reformulation of the ensemble averages commonly encountered in statistical mechanics. This "mapped-averaging" scheme allows approximate theoretical results that have been derived from statistical mechanics to be reintroduced into the underlying formalism, yielding new ensemble averages that represent exactly the error in the theory. The result represents a distinct alternative to perturbation theory for methodically employing tractable systems as a starting point for describing complex systems. Molecular simulation is shown to provide one appealing route to exploit this advance. Calculation of the reformulated averages by molecular simulation can proceed without contamination by noise produced by behavior that has already been captured by the approximate theory. Consequently, accurate and precise values of properties can be obtained while using less computational effort, in favorable cases, many orders of magnitude less. The treatment is demonstrated using three examples: (1) calculation of the heat capacity of an embedded-atom model of iron, (2) calculation of the dielectric constant of the Stockmayer model of dipolar molecules, and (3) calculation of the pressure of a Lennard-Jones fluid. It is observed that improvement in computational efficiency is related to the appropriateness of the underlying theory for the condition being simulated; the accuracy of the result is however not impacted by this. The framework opens many avenues for further development, both as a means to improve simulation methodology and as a new basis to develop theories for thermophysical properties.
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Affiliation(s)
- Andrew J Schultz
- Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York , Buffalo, New York 14260-4200, United States
| | - Sabry G Moustafa
- Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York , Buffalo, New York 14260-4200, United States
| | - Weisong Lin
- Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York , Buffalo, New York 14260-4200, United States
| | - Steven J Weinstein
- Department of Chemical Engineering, Rochester Institute of Technology , Rochester, New York 14623, United States
| | - David A Kofke
- Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York , Buffalo, New York 14260-4200, United States
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9
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Rodríguez-Cantano R, González-Lezana T, Villarreal P. Path integral Monte Carlo investigations on doped helium clusters. INT REV PHYS CHEM 2016. [DOI: 10.1080/0144235x.2015.1132595] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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10
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Rodríguez-Cantano R, Pérez de Tudela R, Bartolomei M, Hernández MI, Campos-Martínez J, González-Lezana T, Villarreal P, Hernández-Rojas J, Bretón J. Coronene molecules in helium clusters: Quantum and classical studies of energies and configurations. J Chem Phys 2015; 143:224306. [DOI: 10.1063/1.4936414] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
| | | | | | - Marta I. Hernández
- Instituto de Física Fundamental, IFF-CSIC, Serrano 123, 28006 Madrid, Spain
| | | | | | - Pablo Villarreal
- Instituto de Física Fundamental, IFF-CSIC, Serrano 123, 28006 Madrid, Spain
| | | | - José Bretón
- Departamento de Física and IUdEA, Universidad de La Laguna, 38205 Tenerife, Spain
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11
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Nagashima H, Tsuda S, Tsuboi N, Koshi M, Hayashi KA, Tokumasu T. An analysis of quantum effects on the thermodynamic properties of cryogenic hydrogen using the path integral method. J Chem Phys 2014; 140:134506. [DOI: 10.1063/1.4870036] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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12
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Buchowiecki M, Vanícek J. Direct evaluation of the temperature dependence of the rate constant based on the quantum instanton approximation. J Chem Phys 2010; 132:194106. [PMID: 20499950 DOI: 10.1063/1.3425617] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A general method for the direct evaluation of the temperature dependence of the quantum-mechanical reaction rate constant in many-dimensional systems is described. The method is based on the quantum instanton approximation for the rate constant, thermodynamic integration with respect to the inverse temperature, and the path integral Monte Carlo evaluation. It can describe deviations from the Arrhenius law due to the coupling of rotations and vibrations, zero-point energy, tunneling, corner-cutting, and other nuclear quantum effects. The method is tested on the Eckart barrier and the full-dimensional H+H(2)-->H(2)+H reaction. In the temperature range from 300 to 1500 K, the error of the present method remains within 13% despite the very large deviations from the Arrhenius law. The direct approach makes the calculations much more efficient, and the efficiency is increased even further (by up to two orders of magnitude in the studied reactions) by using optimal estimators for reactant and transition state thermal energies. Which of the estimators is optimal, however, depends on the system and the strength of constraint in a constrained simulation.
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Affiliation(s)
- Marcin Buchowiecki
- Laboratory of Theoretical Physical Chemistry, Institut des Sciences et Ingenierie Chimiques, Ecole Polytechnique Federale de Lausanne (EPFL), Lausanne CH-1015, Switzerland
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13
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Pérez de Tudela R, Márquez-Mijares M, González-Lezana T, Roncero O, Miret-Artés S, Delgado-Barrio G, Villarreal P. A path-integral Monte Carlo study of a small cluster: The Ar trimer. J Chem Phys 2010; 132:244303. [DOI: 10.1063/1.3445773] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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14
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Glaesemann KR, Fried LE. Quantitative molecular thermochemistry based on path integrals. J Chem Phys 2007; 123:34103. [PMID: 16080726 DOI: 10.1063/1.1954771] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The calculation of thermochemical data requires accurate molecular energies and heat capacities. Traditional methods rely upon the standard harmonic normal-mode analysis to calculate the vibrational and rotational contributions. We utilize path-integral Monte Carlo for going beyond the harmonic analysis and to calculate the vibrational and rotational contributions to ab initio energies. This is an application and an extension of a method previously developed in our group [J. Chem. Phys. 118, 1596 (2003)].
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Affiliation(s)
- Kurt R Glaesemann
- Chemistry and Materials Science Directorate, Lawrence Livermore National Laboratory, University of California, 94551, USA.
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15
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Yang S, Yamamoto T, Miller WH. Path-integral virial estimator for reaction-rate calculation based on the quantum instanton approximation. J Chem Phys 2006; 124:084102. [PMID: 16512703 DOI: 10.1063/1.2171693] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Abstract
The quantum instanton approximation is a type of quantum transition-state theory that calculates the chemical reaction rate using the reactive flux correlation function and its low-order derivatives at time zero. Here we present several path-integral estimators for the latter quantities, which characterize the initial decay profile of the flux correlation function. As with the internal energy or heat-capacity calculation, different estimators yield different variances (and therefore different convergence properties) in a Monte Carlo calculation. Here we obtain a virial (-type) estimator by using a coordinate scaling procedure rather than integration by parts, which allows more computational benefits. We also consider two different methods for treating the flux operator, i.e., local-path and global-path approaches, in which the latter achieves a smaller variance at the cost of using second-order potential derivatives. Numerical tests are performed for a one-dimensional Eckart barrier and a model proton transfer reaction in a polar solvent, which illustrates the reduced variance of the virial estimator over the corresponding thermodynamic estimator.
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Affiliation(s)
- Sandy Yang
- Department of Chemistry and Kenneth S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, California 94720-1460, USA
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16
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Yamamoto TM. Path-integral virial estimator based on the scaling of fluctuation coordinates: Application to quantum clusters with fourth-order propagators. J Chem Phys 2005; 123:104101. [PMID: 16178583 DOI: 10.1063/1.2013257] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023] Open
Abstract
We first show that a simple scaling of fluctuation coordinates defined in terms of a given reference point gives the conventional virial estimator in discretized path integral, where different choices of the reference point lead to different forms of the estimator (e.g., centroid virial). The merit of this procedure is that it allows a finite-difference evaluation of the virial estimator with respect to temperature, which totally avoids the need of higher-order potential derivatives. We apply this procedure to energy and heat-capacity calculations of the (H(2))(22) and Ne(13) clusters at low temperature using the fourth-order Takahashi-Imada [J. Phys. Soc. Jpn. 53, 3765 (1984)] and Suzuki [Phys. Lett. A 201, 425 (1995)] propagators. This type of calculation requires up to third-order potential derivatives if analytical virial estimators are used, but in practice only first-order derivatives suffice by virtue of the finite-difference scheme above. From the application to quantum clusters, we find that the fourth-order propagators do improve upon the primitive approximation, and that the choice of the reference point plays a vital role in reducing the variance of the virial estimator.
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Affiliation(s)
- Takeshi M Yamamoto
- Department of Chemistry, Graduate School of Science, Kyoto University, Japan.
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17
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Avilés MW, Curotto E. Partial averaging and the centroid virial estimator for stereographic projection path-integral simulations in curved spaces. J Chem Phys 2005; 122:164109. [PMID: 15945674 DOI: 10.1063/1.1884109] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We develop and test three different partial averaging theories for the stereographic projection path integral in curved spaces. Additionally, we adapt and test the centroid virial estimator for the kinetic energy in curved spaces. We tested both a confining as well as a nonconfining potential for the particle in a ring. All three partial averaging theories are demonstrated to converge linearly in the asymptotic region with k(-2)max, the number of Fourier coefficients. We use an error estimator to determine the optimal parameters for an extrapolation to infinite kmax. We verify that the centroid virial estimator (derived from the primitive DeWitt path-integral formula) converges to the kinetic energy for both confining and nonconfining potentials.
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Affiliation(s)
- Michael W Avilés
- Department of Chemistry and Physics, Arcadia University, Glenside, Pennsylvania 19038, USA
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18
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Shin S, Son WJ, Jang S. Quantum phase transition of water clusters: molecular dynamics simulations with a model potential. ACTA ACUST UNITED AC 2004. [DOI: 10.1016/j.theochem.2003.12.005] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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19
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Predescu C, Sabo D, Doll JD, Freeman DL. Heat capacity estimators for random series path-integral methods by finite-difference schemes. J Chem Phys 2003. [DOI: 10.1063/1.1625366] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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20
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Predescu C, Sabo D, Doll JD, Freeman DL. Energy estimators for random series path-integral methods. J Chem Phys 2003. [DOI: 10.1063/1.1619372] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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21
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22
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Glaesemann KR, Fried LE. Improved heat capacity estimator for path integral simulations. J Chem Phys 2002. [DOI: 10.1063/1.1493184] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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