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Montes de Oca-Estévez MJ, Valdés Á, Prosmiti R. A kernel-based machine learning potential and quantum vibrational state analysis of the cationic Ar hydride (Ar 2H +). Phys Chem Chem Phys 2024; 26:7060-7071. [PMID: 38345626 DOI: 10.1039/d3cp05865d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2024]
Abstract
One of the most fascinating discoveries in recent years, in the cold and low pressure regions of the universe, was the detection of ArH+ and HeH+ species. The identification of such noble gas-containing molecules in space is the key to understanding noble gas chemistry. In the present work, we discuss the possibility of [Ar2H]+ existence as a potentially detectable molecule in the interstellar medium, providing new data on possible astronomical pathways and energetics of this compound. As a first step, a data-driven approach is proposed to construct a full 3D machine-learning potential energy surface (ML-PES) via the reproducing kernel Hilbert space (RKHS) method. The training and testing data sets are generated from CCSD(T)/CBS[56] computations, while a validation protocol is introduced to ensure the quality of the potential. In turn, the resulting ML-PES is employed to compute vibrational levels and molecular spectroscopic constants for the cation. In this way, the most common isotopologue in ISM, [36Ar2H]+, was characterized for the first time, while simultaneously, comparisons with previously reported values available for [40Ar2H]+ are discussed. Our present data could serve as a benchmark for future studies on this system, as well as on higher-order cationic Ar-hydrides of astrophysical interest.
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Affiliation(s)
- María Judit Montes de Oca-Estévez
- Institute of Fundamental Physics (IFF-CSIC), CSIC, Serrano 123, 28006 Madrid, Spain.
- Atelgraphics S.L., Mota de Cuervo 42, 28043, Madrid, Spain
| | - Álvaro Valdés
- Escuela de Física, Universidad Nacional de Colombia, Sede Medellín, A. A., 3840, Medellín, Colombia
| | - Rita Prosmiti
- Institute of Fundamental Physics (IFF-CSIC), CSIC, Serrano 123, 28006 Madrid, Spain.
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2
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Mabrouk N, Dhiflaoui J, Saidi S, Bejaoui M, Alharzali N, Berriche H. Potential Energy Surface and Bound States of Ne-Li 2+( X2Σ g+) van der Waals Complex Based on Ab Initio Calculations. J Phys Chem A 2023; 127:9167-9177. [PMID: 37890154 PMCID: PMC10641847 DOI: 10.1021/acs.jpca.3c03811] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Revised: 10/07/2023] [Accepted: 10/10/2023] [Indexed: 10/29/2023]
Abstract
Theoretical studies of the potential energy surface and vibrational bound states calculations were performed for the ground state of the Ne-Li2+(X2Σg+) van der Waals (vdW) complex. The intermolecular interactions were investigated by using an accurate monoconfigurational RCCSD(T) method and large basis sets (aug-cc-pVnZ, n = T, Q, 5), extrapolated to the complete basis set (CBS) limit. In turn, the obtained raw data from RCCSD(T)/CBS(Q5) calculations were numerically interpolated using the Morse + vdW model and the Reproducing Kernel Hilbert Space (RKHS) polynomial method to generate analytic expressions for the 2D-PES. The RKHS interpolated PES was then used to assess the bound states of the Ne-Li2+(X2Σg+) system through nuclear quantum calculations. By studying the aspect of the potential energy surface, the analysis sheds light on the behavior of the Ne-Li2+(X2Σg+) complex and its interactions between repulsive and attractive forces with other particles. By examining the vibrational states and wave functions of the system, the researchers were able to gain a better understanding of the behavior of the Ne-Li2+(X2Σg+) complex. The calculated radial and angular distributions for all even and odd symmetries are discussed in detail. We observe that the radial distributions exhibit a more complicated nodal structure, representing stretching vibrational behavior in the neon atom along its radial coordinate. For the highest bound states, the situation is very different, and the energies surpass the angular barrier.
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Affiliation(s)
- Nesrine Mabrouk
- Laboratory
of Interfaces and Advanced Materials, Physics Department, Faculty
of Sciences of Monastir, University of Monastir, Monastir 5019, Tunisia
| | - Jamila Dhiflaoui
- Laboratory
of Interfaces and Advanced Materials, Physics Department, Faculty
of Sciences of Monastir, University of Monastir, Monastir 5019, Tunisia
| | - Samah Saidi
- Laboratory
of Interfaces and Advanced Materials, Physics Department, Faculty
of Sciences of Monastir, University of Monastir, Monastir 5019, Tunisia
- Department
of Physics, College of Science and Humanities in Al-Kharj, Prince Sattam bin Abdulaziz University, Al-Kharj 16273, Saudi Arabia
| | - Mohamed Bejaoui
- Laboratory
of Interfaces and Advanced Materials, Physics Department, Faculty
of Sciences of Monastir, University of Monastir, Monastir 5019, Tunisia
| | - Nissrin Alharzali
- Laboratory
of Interfaces and Advanced Materials, Physics Department, Faculty
of Sciences of Monastir, University of Monastir, Monastir 5019, Tunisia
- Department
of Physical and Theoretical Chemistry, Faculty of Natural Sciences, Comenius University in Bratislava, Bratislava 814 99, Slovakia
| | - Hamid Berriche
- Laboratory
of Interfaces and Advanced Materials, Physics Department, Faculty
of Sciences of Monastir, University of Monastir, Monastir 5019, Tunisia
- Mathematics
and Physics Department, School of Arts and Sciences, American University of Ras Al Khaimah, Ras Al-Khaimah 10021, United Arab Emirates
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3
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Borocci S, Grandinetti F, Sanna N. Complexes of NgHNg+ (Ng = He, Ne, Ar) with He: Theoretical insights into structure, stability, and bonding character. Chem Phys Lett 2023. [DOI: 10.1016/j.cplett.2023.140443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/03/2023]
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Koner D, Barrios L, González-Lezana T, Panda AN. Atom-Diatom Reactive Scattering Collisions in Protonated Rare Gas Systems. Molecules 2021; 26:4206. [PMID: 34299481 PMCID: PMC8304066 DOI: 10.3390/molecules26144206] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 07/07/2021] [Accepted: 07/08/2021] [Indexed: 11/17/2022] Open
Abstract
The study of the dynamics of atom-diatom reactions involving two rare gas (Rg) atoms and protons is of crucial importance given the astrophysical relevance of these processes. In a series of previous studies, we have been investigating a number of such Rg(1)+ Rg(2)H+→ Rg(2)+ Rg(1)H+ reactions by means of different numerical approaches. These investigations comprised the construction of accurate potential energy surfaces by means of ab initio calculations. In this work, we review the state-of-art of the study of these protonated Rg systems making special emphasis on the most relevant features regarding the dynamical mechanisms which govern these reactive collisions. The aim of this work therefore is to provide an as complete as possible description of the existing information regarding these processes.
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Affiliation(s)
- Debasish Koner
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Tirupati, Karakambadi Road, Tirupati 517507, Andhra Pradesh, India;
| | - Lizandra Barrios
- Department of Chemistry, CMS—Centre for Molecular Simulation, IQST—Institute for Quantum Science and Technology and Quantum Alberta, University of Calgary, 2500 University Drive N.W., Calgary, AB T2N 1N4, Canada;
| | | | - Aditya N. Panda
- Department of Chemistry, Indian Institute of Technology Guwahati, Assam 781039, India;
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On the Proton-Bound Noble Gas Dimers (Ng-H-Ng) + and (Ng-H-Ng') + (Ng, Ng'= He-Xe): Relationships betweenStructure, Stability, and Bonding Character. Molecules 2021; 26:molecules26051305. [PMID: 33671081 PMCID: PMC7957648 DOI: 10.3390/molecules26051305] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2021] [Revised: 02/23/2021] [Accepted: 02/24/2021] [Indexed: 11/17/2022] Open
Abstract
The structure, stability, and bonding character of fifteen (Ng-H-Ng)+ and (Ng-H-Ng’)+ (Ng, Ng’ = He-Xe) compounds were explored by theoretical calculations performed at the coupled cluster level of theory. The nature of the stabilizing interactions was, in particular, assayed using a method recently proposed by the authors to classify the chemical bonds involving the noble-gas atoms. The bond distances and dissociation energies of the investigated ions fall in rather large intervals, and follow regular periodic trends, clearly referable to the difference between the proton affinity (PA) of the various Ng and Ng’. These variations are nicely correlated with the bonding situation of the (Ng-H-Ng)+ and (Ng-H-Ng’)+. The Ng-H and Ng’-H contacts range, in fact, between strong covalent bonds to weak, non-covalent interactions, and their regular variability clearly illustrates the peculiar capability of the noble gases to undergo interactions covering the entire spectrum of the chemical bond.
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Koner D. Quantum and quasiclassical dynamical simulations for the Ar 2H + on a new global analytical potential energy surface. J Chem Phys 2021; 154:054303. [PMID: 33557552 DOI: 10.1063/5.0039252] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023] Open
Abstract
A new analytical potential energy surface (PES) has been constructed for the Ar2H+ system from a dataset consisting of a large number of ab initio energies computed using the coupled-cluster singles, doubles and perturbative triples method and aug-cc-pVQZ basis set. The long-range interaction is added to the diatomic potentials using a standard long range expansion form to better describe the asymptotic regions. The vibrational states for the most stable structures of the Ar2H+ system have been calculated, and few low lying states are assigned to quantum numbers. Reactive scattering studies have been performed for the Ar + Ar'H+ → Ar' + ArH+ proton exchange reaction on the newly generated PES. Reaction probability, cross sections, and rate constants are calculated for the Ar + Ar'H+(v = 0, j = 0) collisions within 0.01 eV-0.6 eV of relative translational energy using exact quantum dynamical simulations as well as quasiclassical trajectory (QCT) calculations. The effect of vibrational excitation of the reactants is also explored for the reaction. State averaged rate constants are calculated for the proton exchange reaction at different temperatures using the QCT method. The mechanistic pathways for the reaction are understood by analyzing the quasiclassical trajectories.
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Affiliation(s)
- Debasish Koner
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Tirupati, Karakambadi Road, Mangalam, Tirupati 517507, Andhra Pradesh, India
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7
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Tan JA, Kuo JL. A theoretical study on the infrared signatures of proton-bound rare gas dimers (Rg-H +-Rg), Rg = {Ne, Ar, Kr, and Xe}. J Chem Phys 2019; 150:124305. [PMID: 30927880 DOI: 10.1063/1.5090031] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The infrared spectrum of proton-bound rare gas dimers has been extensively studied via matrix isolation spectroscopy. However, little attention has been paid on their spectrum in the gas phase. Most of the Rg2H+ has not been detected outside the matrix environment. Recently, ArnH+ (n = 3-7) has been first detected in the gas-phase [D. C. McDonald et al., J. Chem. Phys. 145, 231101 (2016)]. In that work, anharmonic theory can reproduce the observed vibrational structure. In this paper, we extend the existing theory to examine the vibrational signatures of Rg2H+, Rg = {Ne, Ar, Kr, and Xe}. The successive binding of Rg to H+ was investigated through the calculation of stepwise formation energies. It was found that this binding is anti-cooperative. High-level full-dimensional potential energy surfaces at the CCSD(T)/aug-cc-pVQZ//MP2/aug-cc-pVQZ were constructed and used in the anharmonic calculation via discrete variable representation. We found that the potential coupling between the symmetric and asymmetric Rg-H+ stretch (ν1 and ν3 respectively) causes a series of bright n1ν1 + ν3 progressions. From Ne2H+ to Xe2H+, an enhancement of intensities for these bands was observed.
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Affiliation(s)
- Jake A Tan
- Institute of Atomic and Molecular Sciences, Academia Sinica, No. 1 Roosevelt Road, Section 4, Taipei 10617, Taiwan
| | - Jer-Lai Kuo
- Institute of Atomic and Molecular Sciences, Academia Sinica, No. 1 Roosevelt Road, Section 4, Taipei 10617, Taiwan
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9
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Grabowski SJ, Ugalde JM, Andrada DM, Frenking G. Comparison of Hydrogen and Gold Bonding in [XHX](-) , [XAuX](-) , and Isoelectronic [NgHNg](+) , [NgAuNg](+) (X=Halogen, Ng=Noble Gas). Chemistry 2016; 22:11317-28. [PMID: 27381200 DOI: 10.1002/chem.201601392] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/23/2016] [Indexed: 11/09/2022]
Abstract
Quantum chemical calculations at the MP2/aug-cc-pVTZ and CCSD(T)/aug-cc-pVTZ levels have been carried out for the title compounds. The electronic structures were analyzed with a variety of charge and energy partitioning methods. All molecules possess linear equilibrium structures with D∞h symmetry. The total bond dissociation energies (BDEs) of the strongly bonded halogen anions [XHX](-) and [XAuX](-) decrease from [FHF](-) to [IHI](-) and from [FAuF](-) to [IAuI](-) . The BDEs of the noble gas compounds [NgHNg](+) and [NgAuNg](+) become larger for the heavier atoms. The central hydrogen and gold atoms carry partial positive charges in the cations and even in the anions, except for [IAuI](-) , in which case the gold atom has a small negative charge of -0.03 e. The molecular electrostatic potentials reveal that the regions of the most positive or negative charges may not agree with the partial charges of the atoms, because the spatial distribution of the electronic charge needs to be considered. The bonding analysis with the QTAIM method suggests a significant covalent character for the hydrogen bonds to the noble gas atoms in [NgHNg](+) and to the halogen atoms in [XHX](-) . The covalent character of the bonding in the gold systems [NgAuNg](+) and [XAuX](-) is smaller than in the hydrogen compound. The energy decomposition analysis suggests that the lighter hydrogen systems possess dative bonds X(-) →H(+) ←X(-) or Ng→H(+) ←Ng while the heavier homologues exhibit electron sharing through two-electron, three-center bonds. Dative bonds X(-) →Au(+) ←X(-) and Ng→Au(+) ←Ng are also diagnosed for the lighter gold systems, but the heavier compounds possess electron-shared bonds.
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Affiliation(s)
- Sławomir J Grabowski
- Kimika Fakultatea, Euskal Herriko Unibertsitatea (UPV/EHU), P.K. 1072, 20080, Donostia, Euskadi, Spain. .,Donostia International Physics Center (DIPC), P.K. 1072, 20080, Donostia, Euskadi, Spain. .,IKERBASQUE, Basque Foundation for Science, Maria Diaz de Haro 3, 48013, Bilbao, Spain.
| | - Jesus M Ugalde
- Kimika Fakultatea, Euskal Herriko Unibertsitatea (UPV/EHU), P.K. 1072, 20080, Donostia, Euskadi, Spain. .,Donostia International Physics Center (DIPC), P.K. 1072, 20080, Donostia, Euskadi, Spain.
| | - Diego M Andrada
- Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse 1, 35032, Marburg, Germany
| | - Gernot Frenking
- Donostia International Physics Center (DIPC), P.K. 1072, 20080, Donostia, Euskadi, Spain. .,Fachbereich Chemie, Philipps-Universität Marburg, Hans-Meerwein-Strasse 1, 35032, Marburg, Germany.
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10
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Koner D, Barrios L, González-Lezana T, Panda AN. Scattering study of the Ne + NeH(+)(v0 = 0, j0 = 0) → NeH(+) + Ne reaction on an ab initio based analytical potential energy surface. J Chem Phys 2016; 144:034303. [PMID: 26801030 DOI: 10.1063/1.4939952] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Initial state selected dynamics of the Ne + NeH(+)(v0 = 0, j0 = 0) → NeH(+) + Ne reaction is investigated by quantum and statistical quantum mechanical (SQM) methods on the ground electronic state. The three-body ab initio energies on a set of suitably chosen grid points have been computed at CCSD(T)/aug-cc-PVQZ level and analytically fitted. The fitting of the diatomic potentials, computed at the same level of theory, is performed by spline interpolation. A collinear [NeHNe](+) structure lying 0.72 eV below the Ne + NeH(+) asymptote is found to be the most stable geometry for this system. Energies of low lying vibrational states have been computed for this stable complex. Reaction probabilities obtained from quantum calculations exhibit dense oscillatory structures, particularly in the low energy region and these get partially washed out in the integral cross section results. SQM predictions are devoid of oscillatory structures and remain close to 0.5 after the rise at the threshold thus giving a crude average description of the quantum probabilities. Statistical cross sections and rate constants are nevertheless in sufficiently good agreement with the quantum results to suggest an important role of a complex-forming dynamics for the title reaction.
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Affiliation(s)
- Debasish Koner
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India
| | - Lizandra Barrios
- IFF-CSIC, Instituto de Física Fundamental, CSIC, Serrano 123, Madrid 28006, Spain
| | | | - Aditya N Panda
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India
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11
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Koner D, Barrios L, González-Lezana T, Panda AN. Wave packet and statistical quantum calculations for the He + NeH⁺ → HeH⁺ + Ne reaction on the ground electronic state. J Chem Phys 2015; 141:114302. [PMID: 25240353 DOI: 10.1063/1.4895567] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A real wave packet based time-dependent method and a statistical quantum method have been used to study the He + NeH(+) (v, j) reaction with the reactant in various ro-vibrational states, on a recently calculated ab initio ground state potential energy surface. Both the wave packet and statistical quantum calculations were carried out within the centrifugal sudden approximation as well as using the exact Hamiltonian. Quantum reaction probabilities exhibit dense oscillatory pattern for smaller total angular momentum values, which is a signature of resonances in a complex forming mechanism for the title reaction. Significant differences, found between exact and approximate quantum reaction cross sections, highlight the importance of inclusion of Coriolis coupling in the calculations. Statistical results are in fairly good agreement with the exact quantum results, for ground ro-vibrational states of the reactant. Vibrational excitation greatly enhances the reaction cross sections, whereas rotational excitation has relatively small effect on the reaction. The nature of the reaction cross section curves is dependent on the initial vibrational state of the reactant and is typical of a late barrier type potential energy profile.
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Affiliation(s)
- Debasish Koner
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India
| | - Lizandra Barrios
- Instituto de Física Fundamental, C.S.I.C., Serrano 123, Madrid 28006, Spain
| | | | - Aditya N Panda
- Department of Chemistry, Indian Institute of Technology Guwahati, Guwahati 781039, India
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12
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Borocci S, Giordani M, Grandinetti F. Complexes of XeHXe+ with Simple Ligands: A Theoretical Investigation on (XeHXe+)L (L = N2, CO, H2O, NH3). J Phys Chem A 2014; 119:2383-92. [DOI: 10.1021/jp5075835] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Stefano Borocci
- Dipartimento per la Innovazione
nei sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy
| | - Maria Giordani
- Dipartimento per la Innovazione
nei sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy
| | - Felice Grandinetti
- Dipartimento per la Innovazione
nei sistemi Biologici, Agroalimentari e Forestali (DIBAF), Università della Tuscia, L.go dell’Università, s.n.c., 01100 Viterbo, Italy
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13
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Koner D, Panda AN. Quantum dynamical study of the He + NeH+ reaction on a new analytical potential energy surface. J Phys Chem A 2013; 117:13070-8. [PMID: 24256154 DOI: 10.1021/jp408550c] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
An analytical potential energy surface (PES) for the ground state of the [HeHNe](+) system has been constructed from a set of 19,605 ab initio data points, obtained from coupled cluster singles and doubles with perturbative triples correction calculations and the aug-cc-pVQZ basis set. The PES is based on the many-body expansion form proposed by Aguado and Paniagua (J. Chem. Phys. 1992, 96, 1265), and it has a root-mean-square error of 0.03 kcal/mol. The minimum energy pathways (MEPs) for different Ne-H-He angles are calculated, and it is found that the MEP for 180° (linear) goes through the deepest potential energy well. Preliminary quantum dynamical studies are performed for the He + NeH(+) (v = 0-2, j = 0-3) → HeH(+) + Ne reaction in the 0.0-0.5 eV collision energy range. Quantum calculations are carried out using a time-dependent wave packet method within the centrifugal sudden approximation. Reaction probabilities exhibit strong oscillatory behavior arising because of the metastable [HeHNe](+). Vibrational excitation has been found to enhance the reaction cross sections.
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Affiliation(s)
- Debasish Koner
- Department of Chemistry, Indian Institute of Technology Guwahati , Guwahati 781039, India
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14
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Ab initio electronic structure investigation of protonated mixed rare gas dimers [NeHHe]+, [ArHHe]+ and [ArHNe]+. COMPUT THEOR CHEM 2012. [DOI: 10.1016/j.comptc.2012.09.004] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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15
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Bouchoux G, Rashad AM, Helal AI. Theoretical Investigation of Selenium Interferences in Inductively Coupled Plasma Mass Spectrometry. J Phys Chem A 2012; 116:9058-70. [DOI: 10.1021/jp304644u] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- G. Bouchoux
- Laboratoire des Mécanismes
Réactionnels, Département de Chimie, Ecole Polytechnique and CNRS, 91128 Palaiseau, France
| | - A. M. Rashad
- Central Laboratory for Elemental
and Isotopic Analysis, Nuclear Research Center, Atomic Energy Authority, Cairo 13759, Egypt
| | - A. I. Helal
- Central Laboratory for Elemental
and Isotopic Analysis, Nuclear Research Center, Atomic Energy Authority, Cairo 13759, Egypt
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16
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Ritschel T, Zülicke L, Kuntz PJ. Cationic Van-der-Waals Complexes: Theoretical Study of Ar2H+ Structure and Stability. Z PHYS CHEM 2009. [DOI: 10.1524/zpch.218.4.377.29196] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
The electronic and geometric structure, stability and molecular properties of the cationic van-der-Waals complex Ar2H+ in its ground electronic state are studied by means of two ab-initio quantum-chemical approaches: conventional configuration interaction (multi-reference and coupled-cluster methods) and a diatomics-in-molecules model with ab-initio input data. To ensure consistency between the two approaches, one and the same one-electron atomic basis set (aug-cc-pVTZ by Dunning) is employed in both. The topography of the ground-state potential-energy surface is examined with respect to the nature of the binding and the stability of structures corresponding to stationary points. In accordance with most earlier theoretical work, there are two local minima at linear arrangements: a strongly bound centro-symmetric moiety, (Ar–H–Ar)+, and a weakly bound van-der-Waals complex, Ar···ArH+. These are separated by a low barrier. Only the centro-symmetric molecule is significantly stable (D
e = 0.68eV) against fragmentation into Ar + ArH+ and should have structural and dynamical relevance. A fairly simple diatomics-in-molecules model taking into account only the few lowest electronic fragment states yields a qualitatively correct description of the ground state but shows quantitative deviations from the more accurate configuration-interaction data in detail. Nevertheless, it should provide a good starting point for the treatment of larger complexes Ar
n
H+ with n > 2.
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17
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Hobza P, Zahradník R, Müller-Dethlefs K. The World of Non-Covalent Interactions: 2006. ACTA ACUST UNITED AC 2006. [DOI: 10.1135/cccc20060443] [Citation(s) in RCA: 166] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Abstract
The review focusses on the fundamental importance of non-covalent interactions in nature by illustrating specific examples from chemistry, physics and the biosciences. Laser spectroscopic methods and both ab initio and molecular modelling procedures used for the study of non-covalent interactions in molecular clusters are briefly outlined. The role of structure and geometry, stabilization energy, potential and free energy surfaces for molecular clusters is extensively discussed in the light of the most advanced ab initio computational results for the CCSD(T) method, extrapolated to the CBS limit. The most important types of non-covalent complexes are classified and several small and medium size non-covalent systems, including H-bonded and improper H-bonded complexes, nucleic acid base pairs, and peptides and proteins are discussed with some detail. Finally, we evaluate the interpretation of experimental results in comparison with state of the art theoretical models: this is illustrated for phenol...Ar, the benzene dimer and nucleic acid base pairs. A review with 270 references.
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