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Wagner JW, Dama JF, Durumeric AEP, Voth GA. On the representability problem and the physical meaning of coarse-grained models. J Chem Phys 2017; 145:044108. [PMID: 27475349 DOI: 10.1063/1.4959168] [Citation(s) in RCA: 93] [Impact Index Per Article: 13.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023] Open
Abstract
In coarse-grained (CG) models where certain fine-grained (FG, i.e., atomistic resolution) observables are not directly represented, one can nonetheless identify indirect the CG observables that capture the FG observable's dependence on CG coordinates. Often, in these cases it appears that a CG observable can be defined by analogy to an all-atom or FG observable, but the similarity is misleading and significantly undermines the interpretation of both bottom-up and top-down CG models. Such problems emerge especially clearly in the framework of the systematic bottom-up CG modeling, where a direct and transparent correspondence between FG and CG variables establishes precise conditions for consistency between CG observables and underlying FG models. Here we present and investigate these representability challenges and illustrate them via the bottom-up conceptual framework for several simple analytically tractable polymer models. The examples provide special focus on the observables of configurational internal energy, entropy, and pressure, which have been at the root of controversy in the CG literature, as well as discuss observables that would seem to be entirely missing in the CG representation but can nonetheless be correlated with CG behavior. Though we investigate these problems in the framework of systematic coarse-graining, the lessons apply to top-down CG modeling also, with crucial implications for simulation at constant pressure and surface tension and for the interpretations of structural and thermodynamic correlations for comparison to experiment.
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Affiliation(s)
- Jacob W Wagner
- Department of Chemistry, James Franck Institute, Institute for Biophysical Dynamics, and Computation Institute, The University of Chicago, Chicago, Illinois 60637, USA
| | - James F Dama
- Department of Chemistry, James Franck Institute, Institute for Biophysical Dynamics, and Computation Institute, The University of Chicago, Chicago, Illinois 60637, USA
| | - Aleksander E P Durumeric
- Department of Chemistry, James Franck Institute, Institute for Biophysical Dynamics, and Computation Institute, The University of Chicago, Chicago, Illinois 60637, USA
| | - Gregory A Voth
- Department of Chemistry, James Franck Institute, Institute for Biophysical Dynamics, and Computation Institute, The University of Chicago, Chicago, Illinois 60637, USA
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Pellicane G, Caccamo C. A thermodynamic self-consistent theory of asymmetric hard-core Yukawa mixtures. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2016; 28:414009. [PMID: 27545096 DOI: 10.1088/0953-8984/28/41/414009] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/06/2023]
Abstract
We perform structural and thermodynamic calculations in the framework of the modified hypernetted chain (MHNC) integral equation closure to the Ornstein-Zernike equation for binary mixtures of size-different particles interacting with hard-core Yukawa pair potentials. We use the Percus-Yevick (PY) bridge functions of a binary mixture of hard-sphere (HSM) particles. The hard-sphere diameters of the PY bridge functions of the HSM system are adjusted so to achieve thermodynamic consistency between the virial and compressibility equations of state. We show the benefit of thermodynamic consistency by comparing the MHNC results with the available computer simulation data reported in the literature, and we demonstrate that the self-consistent thermodynamic theory provides a better reproduction of the simulation data over other microscopic theories.
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Affiliation(s)
- Giuseppe Pellicane
- School of Chemistry and Physics, University of Kwazulu-Natal, Private Bag X01, Scottsville 3209, Pietermaritzburg, South Africa. National Institute for Theoretical Physics (NITheP), KZN Node, Pietermaritzburg, South Africa
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3
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Pellicane G, Pandaram OD. Gibbs ensemble Monte Carlo of nonadditive hard-sphere mixtures. J Chem Phys 2014; 141:044508. [DOI: 10.1063/1.4890742] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Tejero C, Lomba E. Density-dependent interactions and thermodynamic consistency in integral equation theories. Mol Phys 2010. [DOI: 10.1080/00268970902776765] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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6
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Zhou S. Local Self-Consistent Ornstein−Zernike Integral Equation Theory and Application to a Generalized Lennard-Jones Potential. J Phys Chem B 2010; 114:11525-34. [DOI: 10.1021/jp1038317] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
Affiliation(s)
- Shiqi Zhou
- School of Physics Science and Technology, Central South University, Changsha, Hunan 410083, China State Key Laboratory of Powder Metallurgy, Central South University, Changsha, Hunan 410083, China
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Torres-Arenas J, Cervantes LA, Benavides AL, Chapela GA, del Río F. Discrete perturbation theory for the hard-core attractive and repulsive Yukawa potentials. J Chem Phys 2010; 132:034501. [DOI: 10.1063/1.3281416] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- J Torres-Arenas
- División de Ciencias e Ingenierías, Universidad de Guanajuato, Loma del Bosque 103, Colonia Lomas del Campestre, León, Guanajuato CP 37150, Mexico.
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Zhou S, Solana JR. Progress in the Perturbation Approach in Fluid and Fluid-Related Theories. Chem Rev 2009; 109:2829-58. [DOI: 10.1021/cr900094p] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Affiliation(s)
- Shiqi Zhou
- State Key Laboratory of Powder Metallurgy, Central South University, Changsha, Hunan 410083, China, and School of Physics Science and Technology, Central South University, Changsha, Hunan 410083, China
| | - J. R. Solana
- Applied Physics Department, University of Cantabria, 39005 Santander, Spain
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Orea P. Phase diagrams of model C60 and C70 fullerenes from short-range attractive potentials. J Chem Phys 2009; 130:104703. [DOI: 10.1063/1.3081140] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Lomba E, Almarza NG, Martín C, McBride C. Phase behavior of attractive and repulsive ramp fluids: Integral equation and computer simulation studies. J Chem Phys 2007; 126:244510. [PMID: 17614567 DOI: 10.1063/1.2748043] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Using computer simulations and a thermodynamically self-consistent integral equation we investigate the phase behavior and thermodynamic anomalies of a fluid composed of spherical particles interacting via a two-scale ramp potential (a hard core plus a repulsive and an attractive ramp) and the corresponding purely repulsive model. Both simulation and integral equation results predict a liquid-liquid demixing when attractive forces are present, in addition to a gas-liquid transition. Furthermore, a fluid-solid transition emerges in the neighborhood of the liquid-liquid transition region, leading to a phase diagram with a somewhat complicated topology. This solidification at moderate densities is also present in the repulsive ramp fluid, but in this case inhibits the fluid-fluid separation.
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Affiliation(s)
- E Lomba
- Instituto de Química Física Rocasolano, CSIC, Serrano 119, E-28006 Madrid, Spain
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11
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Accurate and local formulation for thermodynamic properties directly from integral equation method. Theor Chem Acc 2007. [DOI: 10.1007/s00214-006-0188-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Abstract
The liquid-liquid phase behavior of binary mixtures in random pores is investigated with non-additive hard spheres using both ROZ (Replica Ornstein-Zernike) integral equations and cavity biased grand canonical Monte Carlo simulations. The critical densities of the coexistence phase envelopes are determined as function of the non-additivity parameter Delta, varying from Delta = 0.2, 0.4, 0.6, up to 0.8. The matrix is made of quenched hard spheres. Its porosity is varied to ascertain the effects of confinement, with packing densities rho(0) ranging from 0.1, 0.3, to 0.5. To obtain fiduciary results from ROZ, we use the accurate ZSEP closure relation proposed earlier with and without thermodynamic consistency. The ZSEP closure is known to enforce the zero-separation theorems via special adjustable parameters in the bridge function. Two versions of this closure are used to assess their accuracies (vis-à-vis the Monte Carlo data): first ZSEP-T, namely, the ZSEP closure with added thermodynamic consistency (the Gibbs-Duhem relation); and second purely ZSEP without adding thermodynamic consistency. It is found that both closures give correct qualitative trend, with errors of ZSEP falling within 8-9%, while ZSEP-T, being more accurate, to within 1-2%. As non-additivity is increased, both versions become more accurate. The critical density rho(c) is found to decrease with decreasing porosity. In addition, rho(c) also decreases with increasing Delta, in a non-monotone fashion.
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Affiliation(s)
- Giuseppe Pellicane
- Dipartimento di Fisica, Università di Messina, Contrada Papardo, 98166 Messina (Me), Italy.
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El Mendoub EB, Wax JF, Jakse N. Phase diagram of the hard-core Yukawa fluid within the integral equation method. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:052501. [PMID: 17279956 DOI: 10.1103/physreve.74.052501] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2006] [Revised: 09/01/2006] [Indexed: 05/13/2023]
Abstract
In this study, the integral equation method proposed recently by Sarkisov [J. Chem. Phys. 114, 9496 (2001).], which has proved accurate for continuous potentials, is extended successfully to the hard sphere potential plus an attractive Yukawa tail. By comparing the results of thermodynamic properties, including the liquid-vapor phase diagram, with available simulation data, it is found that this method remains reliable for this class of models of interaction often used in colloid science.
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Affiliation(s)
- E B El Mendoub
- Laboratoire de Physique des Milieux Denses, Université Paul Verlaine, Metz, 1, Boulevard F. D. Arago, 57078 Metz Cedex 3, France
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Zhou S. Improvement on macroscopic compressibility approximation and beyond. J Chem Phys 2006; 125:144518. [PMID: 17042620 DOI: 10.1063/1.2353834] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A numerical procedure is proposed to extend the thermodynamic perturbation expansion (TPE) to a higher order. It is shown that the present second order term is superior to that due to a macroscopic compressibility approximation (MCA), a local compressibility approximation, and a superposition approximation by Barker and Henderson [Rev. Mod. Phys. 48, 587 (1976)]. Extensive model calculation and comparison with simulation data available in literature and supplied in the present report indicate that the present third order TPE is superior to a previous second order TPE based on the MCA, two previous perturbation theories, which are respectively based on an analytical mean spherical approximation for an Ornstein-Zernike equation, and an assumed explicit functional form for the Laplace transform of radial distribution function multiplied by radial distance, and a recent generalized van der Waals theory. The present critical temperature for a hard core attractive Yukawa fluid of varying range is in very good agreement with that due to a hierarchical reference theory. The present third order TPE is computationally far more modest than the self-consistent integral equation theory, and therefore is a viable alternative to use of the latter.
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Affiliation(s)
- Shiqi Zhou
- Institute of Modern Statistical Mechanics, Hunan University of Technology, Wenhua Road, Zhuzhou 412008, People's Republic of China.
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Zhou S. Thermodynamic perturbation theory in fluid statistical mechanics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2006; 74:031119. [PMID: 17025606 DOI: 10.1103/physreve.74.031119] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/18/2006] [Revised: 07/13/2006] [Indexed: 05/12/2023]
Abstract
A methodology is proposed that pushes the thermodynamic perturbation theory (TPT) from first order to higher order. The second-order correction is superior to a macroscopic compressibility (MC) approximation of Barker and Henderson. The present third-order TPT performs far better than the original first-order TPT and second-order TPT based on the MC approximation for many subfields in fluid statistical mechanics, such as predicting excess Helmholtz free energy, excess chemical potential, bulk pressure, gas-liquid coexistence, and solid-liquid equilibrium of very short-range potential fluids. A nonuniform version of the TPT is proposed; it is also shown that the nonuniform third-order TPT performs far better than the nonuniform first-order TPT in predicting density profile of fluids in critical region. The present report indicates that the TPT still can be a "universal" and accurate theoretical tool that has general applicability in fluid statistical mechanics, especially in soft-matter physics.
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Affiliation(s)
- Shiqi Zhou
- Institute of Modern Statistical Mechanics, Hunan University of Technology, Wenhua Road, Zhuzhou City, 412008, P.R. China.
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Pellicane G, Caccamo C, Wilson DS, Lee LL. Replica Ornstein-Zernike self-consistent theory for mixtures in random pores. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2004; 69:061202. [PMID: 15244549 DOI: 10.1103/physreve.69.061202] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2003] [Indexed: 05/24/2023]
Abstract
We present a self-consistent integral equation theory for a binary liquid in equilibrium with a disordered medium, based on the formalism of the replica Ornstein-Zernike (ROZ) equations. Specifically, we derive direct formulas for the chemical potentials and the zero-separation theorems (the latter provide a connection between the chemical potentials and the fluid cavity distribution functions). Next we solve a modified-Verlet closure to ROZ equations, which has built-in parameters that can be adjusted to satisfy the zero-separation theorems. The degree of thermodynamic consistency of the theory is also kept under control. We model the binary fluid in random pores as a symmetrical binary mixture of nonadditive hard spheres in a disordered hard-sphere matrix and consider two different values of the nonadditivity parameter and of the quenched matrix packing fraction, at different mixture concentrations. We compare the theoretical structural properties as obtained through the present approach with Percus-Yevick and Martinov-Sarkisov integral equation theories, and assess both structural and thermodynamic properties by performing canonical standard and biased grand canonical Monte Carlo simulations. Our theory appears superior to the other integral equation schemes here examined and provides reliable estimates of the chemical potentials. This feature should be useful in studying the fluid phase behavior of model adsorbates in random pores in general.
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Affiliation(s)
- G Pellicane
- Dipartimento di Fisica, Università di Messina and Istituto Nazionale per la Fisica della Materia (INFM), Messina, Italy
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Ben-Amotz D, Stell G. Analytical implementation and critical tests of fluid thermodynamic perturbation theory. J Chem Phys 2003. [DOI: 10.1063/1.1620995] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Costa D, Pellicane G, Caccamo C, Schöll-Paschinger E, Kahl G. Theoretical description of phase coexistence in model C60. ACTA ACUST UNITED AC 2003; 68:021104. [PMID: 14524950 DOI: 10.1103/physreve.68.021104] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2003] [Indexed: 11/07/2022]
Abstract
We have investigated the phase diagram of a pair interaction model of C60 fullerene [L. A. Girifalco, J. Phys. Chem. 96, 858 (1992)], in the framework provided by two integral equation theories of the liquid state, namely, the modified hypernetted chain (MHNC) implemented under a global thermodynamic consistency constraint, and the self-consistent Ornstein-Zernike approximation (SCOZA), and by a perturbation theory (PT) with various degrees of refinement, for the free energy of the solid phase. We present an extended assessment of such theories as set against a recent Monte Carlo study of the same model [D. Costa, G. Pellicane, C. Caccamo, and M. C. Abramo, J. Chem. Phys. 118, 304 (2003)]. We have compared the theoretical predictions with the corresponding simulation results for several thermodynamic properties such as the free energy, the pressure, and the internal energy. Then we have determined the phase diagram of the model, by using either the SCOZA, the MHNC, or the PT predictions for one of the coexisting phases, and the simulation data for the other phase, in order to separately ascertain the accuracy of each theory. It turns out that the overall appearance of the phase portrait is reproduced fairly well by all theories, with remarkable accuracy as for the melting line and the solid-vapor equilibrium. All theories show a more or less pronounced discrepancy with the simulated fluid-solid coexistence pressure, above the triple point. The MHNC and SCOZA results for the liquid-vapor coexistence, as well as for the corresponding critical points, are quite accurate; the SCOZA tends to underestimate the density corresponding to the freezing line. All results are discussed in terms of the basic assumptions underlying each theory. We have then selected the MHNC for the fluid and the first-order PT for the solid phase, as the most accurate tools to investigate the phase behavior of the model in terms of purely theoretical approaches. It emerges that the use of different procedures to characterize the fluid and the solid phases provides a semiquantitative reproduction of the thermodynamic properties of the C60 model at issue. The overall results appear as a robust benchmark for further theoretical investigations on higher order C(n>60) fullerenes, as well as on other fullerene-related materials, whose description can be based on a modelization similar to that adopted in this work.
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Affiliation(s)
- D Costa
- Istituto Nazionale per la Fisica della Materia (INFM) and Dipartimento di Fisica, Università di Messina, Contrada Papardo, Cassella Postale 50, 98166 Messina, Italy.
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Bomont JM, Bretonnet JL. A self-consistent integral equation: Bridge function and thermodynamic properties for the Lennard-Jones fluid. J Chem Phys 2003. [DOI: 10.1063/1.1583675] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Costa D, Pellicane G, Abramo MC, Caccamo C. Free energy determination of phase coexistence in model C60: A comprehensive Monte Carlo study. J Chem Phys 2003. [DOI: 10.1063/1.1525800] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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