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Tyuterev V, Tashkun S, Rey M, Nikitin A. High-order contact transformations of molecular Hamiltonians: general approach, fast computational algorithm and convergence of ro-vibrational polyad models. Mol Phys 2022. [DOI: 10.1080/00268976.2022.2096140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
- Vladimir Tyuterev
- Groupe de Spectrométrie Moléculaire et Atmosphérique, Université de Reims, Reims, France
- Laboratory of Molecular Quantum Mechanics and Radiative Transfer, Tomsk State University, Tomsk, Russia
| | - Sergey Tashkun
- Laboratory of Theoretical Spectroscopy, V.E. Zuev Institute of Atmospheric Optics, Siberian Branch, Russian Academy of Sciences, Tomsk, Russia
| | - Michael Rey
- Groupe de Spectrométrie Moléculaire et Atmosphérique, Université de Reims, Reims, France
| | - Andrei Nikitin
- Laboratory of Theoretical Spectroscopy, V.E. Zuev Institute of Atmospheric Optics, Siberian Branch, Russian Academy of Sciences, Tomsk, Russia
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Huang X, Schwenke DW, Lee TJ. What It Takes to Compute Highly Accurate Rovibrational Line Lists for Use in Astrochemistry. Acc Chem Res 2021; 54:1311-1321. [PMID: 33621060 DOI: 10.1021/acs.accounts.0c00624] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
ConspectusWe review the Best Theory + Reliable High-Resolution Experiment (BTRHE) strategy for obtaining highly accurate molecular rovibrational line lists with InfraRed (IR) intensities. The need for highly accurate molecular rovibrational line lists is twofold: (a) assignment of the many rovibrational lines for common stable molecules especially those that exhibit a large amplitude motion, such as NH3, or have a high density of states such as SO2; and (b) characterization of the atmospheres of exoplanets, which will be one of the main areas of research in astronomy in the coming decades. The first motivation arises due to the need to eliminate lines due to common molecules in an astronomical observation in order to identify lines from new molecules, while the second motivation arises due to the need to obtain accurate molecular opacities in order to characterize the atmosphere of an exoplanet. The BTRHE strategy first consists of using high-quality ab initio quantum-chemical methods to obtain a global potential energy surface (PES) and dipole moment surface (DMS) that contains the proper physics. The global PES is then refined using a subset of the reliable high-resolution experimental data. The refined PES then gives energy-level predictions to an accuracy similar to the reproduction accuracy of the experimental data used in the refinement step in the interpolation region (i.e., within the range of the experimental data used in the refinement step). The accuracy of the energy levels will slowly degrade as they are extrapolated to spectral regions beyond the high-resolution experimental data used in the refinement step. However, because the degradation is slow, the predicted energy levels can be used to assign new high-resolution experiments, and the data from these can then be used in a subsequent refinement step. In this way, the global PES eventually can yield highly accurate energy levels for all desired spectral regions including to very high energies and high J values. We show that IR intensities computed with the BTRHE rovibrational wave functions and the DMS can be very accurate provided one has minimized the fitting error of the DMS and tested the completeness of the DMS. Some examples of our work on NH3, CO2, and SO2 are given to highlight the usefulness of the BTRHE strategy and to provide ideas on how to further improve its predictive power in the future. In particular, it is shown how successive refinement steps, once new high-resolution data are available, can lead to PESs that yield highly accurate transition energies to larger spectral regions. The importance of including nonadiabatic corrections to reduce the J-dependence of errors for H-containing molecules is shown with work on NH3. Another very important aspect of the BTRHE approach is the consistency across isotopologues, which allows for highly accurate line lists for any isotopologue once one is obtained for the main isotopologue (which has more high-resolution data available for refinement).
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Affiliation(s)
- Xinchuan Huang
- SETI Institute, 189 Bernardo Avenue, Suite 200, Mountain View, California 94043, United States
- MS 245-6, Astrophysics Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - David W. Schwenke
- MS 258-2, NAS Facility, NASA Ames Research Center, Moffett Field, California 94035, United States
| | - Timothy J. Lee
- MS245-3, Planetary Systems Branch, Space Science and Astrobiology Division, NASA Ames Research Center, Moffett Field, California 94035, United States
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Viglaska D, Rey M, Nikitin AV, Tyuterev VG. Derivation of ρ-dependent coordinate transformations for nonrigid molecules in the Hougen-Bunker-Johns formalism. J Chem Phys 2020; 153:084102. [PMID: 32872870 DOI: 10.1063/5.0016365] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
In this paper, we report a series of transformations for the construction of a Hamiltonian model for nonrigid polyatomic molecules in the framework of the Hougen-Bunker-Johns formalism (HBJ). This model is expressed in normal mode coordinates for small vibrations and in a specific coordinate ρ to describe the large amplitude motion. For the first time, a general procedure linking the "true" curvilinear coordinates to ρ is proposed, allowing the expression of the potential energy part in the same coordinate representation as the kinetic energy operator, whatever the number of atoms. A Lie group-based method is also proposed for the derivation of the reference configuration in the internal axis system. This work opens new perspectives for future high-resolution spectroscopy studies of nonrigid, medium-sized molecules using HBJ-type Hamiltonians. Illustrative examples and computation of vibrational energy levels on semirigid and nonrigid molecules are given to validate this method.
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Affiliation(s)
- Dominika Viglaska
- Chemistry Department, Queen's University, Kingston, Ontario K7L 3N6, Canada
| | - Michael Rey
- Groupe de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 7331, BP 1039, F-51687 Reims Cedex 2, France
| | - Andrei V Nikitin
- Laboratory of Theoretical Spectroscopy, Institute of Atmospheric Optics, SB RAS, 634055 Tomsk, Russia
| | - Vladimir G Tyuterev
- Groupe de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 7331, BP 1039, F-51687 Reims Cedex 2, France
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Rey M. Group-theoretical formulation of an Eckart-frame kinetic energy operator in curvilinear coordinates for polyatomic molecules. J Chem Phys 2019; 151:024101. [DOI: 10.1063/1.5109482] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Michael Rey
- Groupe de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 7331, BP 1039, F-51687 Reims Cedex 2, France
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Mizus II, Kyuberis AA, Zobov NF, Makhnev VY, Polyansky OL, Tennyson J. High-accuracy water potential energy surface for the calculation of infrared spectra. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2018; 376:rsta.2017.0149. [PMID: 29431677 PMCID: PMC5805917 DOI: 10.1098/rsta.2017.0149] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Accepted: 11/30/2017] [Indexed: 05/06/2023]
Abstract
Transition intensities for small molecules such as water and CO2 can now be computed with such high accuracy that they are being used to systematically replace measurements in standard databases. These calculations use high-accuracy ab initio dipole moment surfaces and wave functions from spectroscopically determined potential energy surfaces (PESs). Here, an extra high-accuracy PES of the water molecule (H216O) is produced starting from an ab initio PES which is then refined to empirical rovibrational energy levels. Variational nuclear motion calculations using this PES reproduce the fitted energy levels with a standard deviation of 0.011 cm-1, approximately three times their stated uncertainty. The use of wave functions computed with this refined PES is found to improve the predicted transition intensities for selected (problematic) transitions. A new room temperature line list for H216O is presented. It is suggested that the associated set of line intensities is the most accurate available to date for this species.This article is part of the theme issue 'Modern theoretical chemistry'.
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Affiliation(s)
- Irina I Mizus
- Institute of Applied Physics, Russian Academy of Science, Ulyanov Street 46, Nizhny Novgorod 603950, Russia
| | - Aleksandra A Kyuberis
- Institute of Applied Physics, Russian Academy of Science, Ulyanov Street 46, Nizhny Novgorod 603950, Russia
| | - Nikolai F Zobov
- Institute of Applied Physics, Russian Academy of Science, Ulyanov Street 46, Nizhny Novgorod 603950, Russia
| | - Vladimir Yu Makhnev
- Institute of Applied Physics, Russian Academy of Science, Ulyanov Street 46, Nizhny Novgorod 603950, Russia
| | - Oleg L Polyansky
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, UK
| | - Jonathan Tennyson
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, UK
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Yachmenev A, Yurchenko SN. Automatic differentiation method for numerical construction of the rotational-vibrational Hamiltonian as a power series in the curvilinear internal coordinates using the Eckart frame. J Chem Phys 2015; 143:014105. [DOI: 10.1063/1.4923039] [Citation(s) in RCA: 59] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Andrey Yachmenev
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
| | - Sergei N. Yurchenko
- Department of Physics and Astronomy, University College London, Gower Street, London WC1E 6BT, United Kingdom
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Rey M, Nikitin AV, Tyuterev VG. First Predictions of Rotationally Resolved Infrared Spectra of Dideuteromethane (12CH2D2) From Potential Energy and Dipole Moment Surfaces. J Phys Chem A 2015; 119:4763-79. [DOI: 10.1021/acs.jpca.5b00587] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Michaël Rey
- Groupe
de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 7331, BP 1039, F-51687, Reims Cedex 2, France
| | - Andrei V. Nikitin
- Laboratory
of Theoretical Spectroscopy, Institute of Atmospheric Optics, SB RAS, 634055 TOMSK, Russia
| | - Vladimir G. Tyuterev
- Groupe
de Spectrométrie Moléculaire et Atmosphérique, UMR CNRS 7331, BP 1039, F-51687, Reims Cedex 2, France
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Schwenke DW. A unified derivation of Hamiltonian and optical transition matrix elements for open shell diatomic and polyatomic molecules using transformation tools of modern quantum mechanics. J Chem Phys 2015; 142:144107. [DOI: 10.1063/1.4916952] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Nikitin AV, Rey M, Tyuterev VG. An efficient method for energy levels calculation using full symmetry and exact kinetic energy operator: Tetrahedral molecules. J Chem Phys 2015; 142:094118. [DOI: 10.1063/1.4913520] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Lai PK, Lin ST. Internal coordinate density of state from molecular dynamics simulation. J Comput Chem 2015; 36:507-17. [DOI: 10.1002/jcc.23822] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2014] [Revised: 11/30/2014] [Accepted: 12/02/2014] [Indexed: 11/11/2022]
Affiliation(s)
- Pin-Kuang Lai
- Department of Chemical Engineering; National Taiwan University; Taipei 10617 Taiwan
| | - Shiang-Tai Lin
- Department of Chemical Engineering; National Taiwan University; Taipei 10617 Taiwan
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Rey M, Nikitin AV, Tyuterev VG. Complete nuclear motion Hamiltonian in the irreducible normal mode tensor operator formalism for the methane molecule. J Chem Phys 2012; 136:244106. [DOI: 10.1063/1.4730030] [Citation(s) in RCA: 75] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Vázquez J, Harding ME, Stanton JF, Gauss J. Vibrational Energy Levels via Finite-Basis Calculations Using a Quasi-Analytic Form of the Kinetic Energy. J Chem Theory Comput 2011; 7:1428-42. [DOI: 10.1021/ct100711u] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Juana Vázquez
- Center for Theoretical Chemistry, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712, United States
- Institut für Physikalische Chemie, Universität Mainz, D-55099 Mainz, Germany
| | - Michael E. Harding
- Center for Theoretical Chemistry, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712, United States
- Institut für Physikalische Chemie, Universität Mainz, D-55099 Mainz, Germany
| | - John F. Stanton
- Center for Theoretical Chemistry, Department of Chemistry and Biochemistry, University of Texas at Austin, Austin, Texas 78712, United States
| | - Jürgen Gauss
- Institut für Physikalische Chemie, Universität Mainz, D-55099 Mainz, Germany
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Rey M, Nikitin A, Tyuterev V. Ab initioro-vibrational Hamiltonian in irreducible tensor formalism: a method for computing energy levels from potential energy surfaces for symmetric-top molecules. Mol Phys 2010. [DOI: 10.1080/00268976.2010.506892] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Evenhuis C, Nyman G, Manthe U. Quantum dynamics of the CH3 fragment: A curvilinear coordinate system and kinetic energy operators. J Chem Phys 2007; 127:144302. [DOI: 10.1063/1.2779034] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Makarewicz J, Skalozub A. Rovibrational molecular hamiltonian in mixed bond-angle and umbrella-like coordinates. J Phys Chem A 2007; 111:7860-9. [PMID: 17637044 DOI: 10.1021/jp071862q] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
Abstract
A new exact quantum mechanical rovibrational Hamiltonian operator for molecules exhibiting large amplitude inversion and torsion motions is derived. The derivation is based on a division of a molecule into two parts: a frame and a top. The nuclei of the frame only are used to construct a molecular system of axes. The inversion motion of the frame is described in the umbrella-like coordinates, whereas the torsion motion of the top is described by the nonstandard torsion angle defined in terms of the nuclear vectors and one of the molecular axes. The internal coordinates chosen take into account the properties of the inversion and torsion motions. Vibrational s and rotational Omega vectors obtained for the introduced internal coordinates determine the rovibrational tensor G defined by simple scalar products of these vectors. The Jacobian of the transformation from the Cartesian to the internal coordinates considered and the G tensor specify the rovibrational Hamiltonian. As a result, the Hamiltonian for penta-atomic molecules like NH2OH with one inverter is presented and a complete set of the formulas necessary to write down the Hamiltonian of more complex molecules, like NH2NH2 with two inverters, is reported. The approach considered is essentially general and sufficiently simple, as demonstrated by derivation of a polyatomic molecule Hamiltonian in polyspherical coordinates, obtained by other methods with much greater efforts.
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Affiliation(s)
- Jan Makarewicz
- A. Mickiewicz University, Faculty of Chemistry, PL 60-780 Poznań, Poland
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