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For: Kim SY, Hammes-Schiffer S. Molecular dynamics with quantum transitions for proton transfer: Quantum treatment of hydrogen and donor–acceptor motions. J Chem Phys 2003. [DOI: 10.1063/1.1592509] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]  Open
Number Cited by Other Article(s)
1
Toldo JM, do Casal MT, Ventura E, do Monte SA, Barbatti M. Surface hopping modeling of charge and energy transfer in active environments. Phys Chem Chem Phys 2023;25:8293-8316. [PMID: 36916738 PMCID: PMC10034598 DOI: 10.1039/d3cp00247k] [Citation(s) in RCA: 4] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
2
Mandal A, Li X, Huo P. Theory of vibrational polariton chemistry in the collective coupling regime. J Chem Phys 2022;156:014101. [PMID: 34998324 DOI: 10.1063/5.0074106] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
3
Kojima H, Yamada A, Okazaki S. A molecular dynamics study of intramolecular proton transfer reaction of malonaldehyde in solution based upon a mixed quantum–classical approximation. II. Proton transfer reaction in non-polar solvent. J Chem Phys 2015;142:174502. [DOI: 10.1063/1.4919635] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
4
Kapral R. Quantum dynamics in open quantum-classical systems. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2015;27:073201. [PMID: 25634784 DOI: 10.1088/0953-8984/27/7/073201] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
5
Yamada A, Kojima H, Okazaki S. A molecular dynamics study of intramolecular proton transfer reaction of malonaldehyde in solutions based upon mixed quantum-classical approximation. I. Proton transfer reaction in water. J Chem Phys 2014;141:084509. [DOI: 10.1063/1.4893933] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
6
Layfield JP, Hammes-Schiffer S. Hydrogen tunneling in enzymes and biomimetic models. Chem Rev 2014;114:3466-94. [PMID: 24359189 PMCID: PMC3981923 DOI: 10.1021/cr400400p] [Citation(s) in RCA: 178] [Impact Index Per Article: 17.8] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
7
Tomkins J, Hanna G. Signatures of nanoconfinement on the linear and nonlinear vibrational spectroscopy of a model hydrogen-bonded complex dissolved in a polar solvent. J Phys Chem B 2013;117:13619-30. [PMID: 24079369 DOI: 10.1021/jp407469f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
8
Sow CS, Tomkins J, Hanna G. Computational study of the one- and two-dimensional infrared spectra of a proton-transfer mode in a hydrogen-bonded complex dissolved in a polar nanocluster. Chemphyschem 2013;14:3309-18. [PMID: 23946271 DOI: 10.1002/cphc.201300610] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Indexed: 11/07/2022]
9
Masuda Y, Mori Y, Sakurai K. Effects of Counterion and Solvent on Proton Location and Proton Transfer Dynamics of N–H···N Hydrogen Bond of Monoprotonated 1,8-Bis(dimethylamino)naphthalene. J Phys Chem A 2013;117:10576-87. [DOI: 10.1021/jp4061297] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
10
Habershon S, Manolopoulos DE, Markland TE, Miller TF. Ring-Polymer Molecular Dynamics: Quantum Effects in Chemical Dynamics from Classical Trajectories in an Extended Phase Space. Annu Rev Phys Chem 2013;64:387-413. [DOI: 10.1146/annurev-physchem-040412-110122] [Citation(s) in RCA: 448] [Impact Index Per Article: 40.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
11
Nakano T, Masuda Y. Application of Nuclear Magnetic Relaxation To Elucidate Proton Location and Dynamics in N···H···O Hydrogen Bonds. J Phys Chem A 2012;116:8409-18. [DOI: 10.1021/jp303297c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
12
Masuda Y, Nakano T, Sugiyama M. First observation of ultrafast intramolecular proton transfer rate between electronic ground states in solution. J Phys Chem A 2012;116:4485-94. [PMID: 22510164 DOI: 10.1021/jp2110874] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
13
Shalashilin DV. Multiconfigurational Ehrenfest approach to quantum coherent dynamics in large molecular systems. Faraday Discuss 2012;153:105-16; discussion 189-212. [PMID: 22452076 DOI: 10.1039/c1fd00034a] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
14
Nelson T, Fernandez-Alberti S, Chernyak V, Roitberg AE, Tretiak S. Nonadiabatic excited-state molecular dynamics: Numerical tests of convergence and parameters. J Chem Phys 2012;136:054108. [DOI: 10.1063/1.3680565] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
15
Craig IR, Thoss M, Wang H. Accurate quantum-mechanical rate constants for a linear response Azzouz-Borgis proton transfer model employing the multilayer multiconfiguration time-dependent Hartree approach. J Chem Phys 2011;135:064504. [DOI: 10.1063/1.3624342] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Shi Q, Zhu L, Chen L. Quantum rate dynamics for proton transfer reaction in a model system: Effect of the rate promoting vibrational mode. J Chem Phys 2011;135:044505. [DOI: 10.1063/1.3611050] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
17
Aono S, Yamamoto T, Kato S. Solution reaction space Hamiltonian based on an electrostatic potential representation of solvent dynamics. J Chem Phys 2011;134:144108. [DOI: 10.1063/1.3572057] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
18
Alexandrova AN. H·(H2O)n Clusters: Microsolvation of the Hydrogen Atom via Molecular ab Initio Gradient Embedded Genetic Algorithm (GEGA). J Phys Chem A 2010;114:12591-9. [DOI: 10.1021/jp1092543] [Citation(s) in RCA: 60] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
19
Aono S, Kato S. Proton transfer in phenol-amine complexes: Phenol electronic effects on free energy profile in solution. J Comput Chem 2010;31:2924-31. [DOI: 10.1002/jcc.21588] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
20
Kamerlin SCL, Warshel A. At the dawn of the 21st century: Is dynamics the missing link for understanding enzyme catalysis? Proteins 2010;78:1339-75. [PMID: 20099310 PMCID: PMC2841229 DOI: 10.1002/prot.22654] [Citation(s) in RCA: 345] [Impact Index Per Article: 24.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
21
Kim J, Wu Y, Brédas JL, Batista VS. Quantum Dynamics of the Excited-State Intramolecular Proton Transfer in 2-(2′-Hydroxyphenyl)benzothiazole. Isr J Chem 2009. [DOI: 10.1560/ijc.49.2.187] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
22
Shalashilin DV. Quantum mechanics with the basis set guided by Ehrenfest trajectories: Theory and application to spin-boson model. J Chem Phys 2009;130:244101. [DOI: 10.1063/1.3153302] [Citation(s) in RCA: 117] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
23
Wu Y, Brédas JL. Simulations of the emission spectra of fac-tris(2-phenylpyridine) iridium and Duschinsky rotation effects using the Herman–Kluk semiclassical initial value representation method. J Chem Phys 2008;129:214305. [DOI: 10.1063/1.3027514] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
24
Hanna G, Geva E. Computational Study of the One and Two Dimensional Infrared Spectra of a Vibrational Mode Strongly Coupled to Its Environment: Beyond the Cumulant and Condon Approximations. J Phys Chem B 2008;112:12991-3004. [DOI: 10.1021/jp804120v] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
25
Hanna G, Kapral R. Quantum-classical Liouville dynamics of proton and deuteron transfer rates in a solvated hydrogen-bonded complex. J Chem Phys 2008;128:164520. [DOI: 10.1063/1.2907847] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
26
Collepardo-Guevara R, Craig IR, Manolopoulos DE. Proton transfer in a polar solvent from ring polymer reaction rate theory. J Chem Phys 2008;128:144502. [DOI: 10.1063/1.2883593] [Citation(s) in RCA: 86] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]  Open
27
Hanna G, Geva E. Vibrational Energy Relaxation of a Hydrogen-Bonded Complex Dissolved in a Polar Liquid via the Mixed Quantum−Classical Liouville Method. J Phys Chem B 2008;112:4048-58. [DOI: 10.1021/jp076155b] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
28
Kim H, Kapral R. Proton and Deuteron Transfer Reactions in Molecular Nanoclusters. Chemphyschem 2008;9:470-4. [DOI: 10.1002/cphc.200700709] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
29
Yamada A, Okazaki S. A quantum equation of motion for chemical reaction systems on an adiabatic double-well potential surface in solution based on the framework of mixed quantum-classical molecular dynamics. J Chem Phys 2008;128:044507. [DOI: 10.1063/1.2825611] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
30
Sharma R, Thorley M, McNamara JP, Watt CIF, Burton NA. A computational study of the intramolecular deprotonation of a carbon acid in aqueous solution. Phys Chem Chem Phys 2008;10:2475-87. [DOI: 10.1039/b717524h] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
31
Vanícek J, Miller WH. Efficient estimators for quantum instanton evaluation of the kinetic isotope effects: Application to the intramolecular hydrogen transfer in pentadiene. J Chem Phys 2007;127:114309. [PMID: 17887839 DOI: 10.1063/1.2768930] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
32
Takatsuka K. Generalization of classical mechanics for nuclear motions on nonadiabatically coupled potential energy surfaces in chemical reactions. J Phys Chem A 2007;111:10196-204. [PMID: 17676718 DOI: 10.1021/jp072233j] [Citation(s) in RCA: 54] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
33
Kapral R. Progress in the theory of mixed quantum-classical dynamics. Annu Rev Phys Chem 2007;57:129-57. [PMID: 16599807 DOI: 10.1146/annurev.physchem.57.032905.104702] [Citation(s) in RCA: 184] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
34
Quantum–Classical Reaction Rate Theory. ACTA ACUST UNITED AC 2007. [DOI: 10.1007/978-3-540-34460-5_13] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
35
Kim H, Kapral R. Solvation and proton transfer in polar molecule nanoclusters. J Chem Phys 2006;125:234309. [PMID: 17190560 DOI: 10.1063/1.2404956] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
36
Nuñez S, Tresadern G, Hillier IH, Burton NA. An analysis of reaction pathways for proton tunnelling in methylamine dehydrogenase. Philos Trans R Soc Lond B Biol Sci 2006;361:1387-98. [PMID: 16873126 PMCID: PMC1647307 DOI: 10.1098/rstb.2006.1867] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
37
Miller WH. Including quantum effects in the dynamics of complex (i.e., large) molecular systems. J Chem Phys 2006;125:132305. [PMID: 17029424 DOI: 10.1063/1.2211608] [Citation(s) in RCA: 75] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
38
Kim H, Hanna G, Kapral R. Analysis of kinetic isotope effects for nonadiabatic reactions. J Chem Phys 2006;125:084509. [PMID: 16965031 DOI: 10.1063/1.2336778] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
39
Kim SY, Hammes-Schiffer S. Hybrid quantum/classical molecular dynamics for a proton transfer reaction coupled to a dissipative bath. J Chem Phys 2006;124:244102. [PMID: 16821968 DOI: 10.1063/1.2206175] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
40
Wu Y, Batista VS. Matching-pursuit split-operator Fourier-transform simulations of excited-state intramolecular proton transfer in 2-(2′-hydroxyphenyl)-oxazole. J Chem Phys 2006;124:224305. [PMID: 16784272 DOI: 10.1063/1.2202847] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
41
Song X, Van Voorhis T. A coherent state approach to semiclassical nonadiabatic dynamics. J Chem Phys 2006;124:134104. [PMID: 16613446 DOI: 10.1063/1.2183307] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
42
Yamada A, Okazaki S. A surface hopping method for chemical reaction dynamics in solution described by diabatic representation: An analysis of tunneling and thermal activation. J Chem Phys 2006;124:94110. [PMID: 16526848 DOI: 10.1063/1.2172595] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
43
Takatsuka K. Non-Born-Oppenheimer path in anti-Hermitian dynamics for nonadiabatic transitions. J Chem Phys 2006;124:64111. [PMID: 16483200 DOI: 10.1063/1.2167648] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
44
Vanícek J, Miller WH, Castillo JF, Aoiz FJ. Quantum-instanton evaluation of the kinetic isotope effects. J Chem Phys 2005;123:054108. [PMID: 16108632 DOI: 10.1063/1.1946740] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
45
Manca† C, Tanner C, Leutwyler S. Excited state hydrogen atom transfer in ammonia-wire and water-wire clusters. INT REV PHYS CHEM 2005. [DOI: 10.1080/01442350500390912] [Citation(s) in RCA: 67] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
46
Hanna G, Kapral R. Quantum-classical Liouville dynamics of nonadiabatic proton transfer. J Chem Phys 2005;122:244505. [PMID: 16035780 DOI: 10.1063/1.1940051] [Citation(s) in RCA: 98] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]  Open
47
Tanner C, Manca C, Leutwyler S. Exploring excited-state hydrogen atom transfer along an ammonia wire cluster: Competitive reaction paths and vibrational mode selectivity. J Chem Phys 2005;122:204326. [PMID: 15945743 DOI: 10.1063/1.1924410] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]  Open
48
Miller WH. Quantum dynamics of complex molecular systems. Proc Natl Acad Sci U S A 2005;102:6660-4. [PMID: 15870209 PMCID: PMC1100740 DOI: 10.1073/pnas.0408043102] [Citation(s) in RCA: 87] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
49
Amano M, Takatsuka K. Quantum fluctuation of electronic wave-packet dynamics coupled with classical nuclear motions. J Chem Phys 2005;122:84113. [PMID: 15836026 DOI: 10.1063/1.1854115] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
50
Yamamoto T, Miller WH. Path integral evaluation of the quantum instanton rate constant for proton transfer in a polar solvent. J Chem Phys 2005;122:44106. [PMID: 15740234 DOI: 10.1063/1.1832598] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
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