Picosecond IR–UV pump–probe spectroscopic study of the dynamics of the vibrational relaxation of jet-cooled phenol. II. Intracluster vibrational energy redistribution of the OH stretching vibration of hydrogen-bonded clusters

Nitrile Vibrational Lifetimes as Probes of Local Electric Fields

Optical measurements of electric fields have wide-ranging applications in the fields of chemistry and biology. Previously, such measurements focused on shifts in intensity or frequency. Here, we show that nitrile vibrational lifetimes can report local electric fields through ultrasensitive picosecond mid-infrared-near-infrared double-resonance fluorescence spectro-microscopy on Rhodamine 800. Using a robust convolution fitting approach, we observe that the nitrile vibrational lifetimes are strongly linearly correlated (R2 = 0.841) with solvent reaction fields. Supported by density functional theory, we rationalize this trend through a doorway model of intramolecular vibrational energy redistribution. This work provides new fundamental insights into the nature of vibrational energy flow in large polyatomic molecular systems and establishes a theoretical basis for electric field sensing with vibrational lifetimes, offering a new experimental dimension for probing intracellular electrostatics.

Near-infrared spectroscopy of H3O+⋯Xn (X = Ar, N2, and CO, n = 1-3)

Near-infrared (NIR) spectra of H3O+⋯Xn (X = Ar, N2, and CO, n = 1-3) in the first overtone region of OH-stretching vibrations (4800-7000 cm-1) were measured. Not only OH-stretching overtones but also several combination bands are major features in this region, and assignments of these observed bands are not obvious at a glance. High-precision anharmonic vibrational simulations based on the discrete variable representation approach were performed. The simulated spectra show good agreement with the observed ones and provide firm assignments of the observed bands, except in the case of X = CO, in which higher order vibrational mode couplings seem significant. This agreement demonstrates that the present system can be a benchmark for high precision anharmonic vibrational computations of NIR spectra. Band broadening in the observed spectra becomes remarkable with an increase of the interaction with the solvent molecule (X). The origin of the band broadening is explored by rare gas tagging experiments and anharmonic vibrational simulations of hot bands.

Real-time observation of the photoionization-induced water rearrangement dynamics in the 5-hydroxyindole-water cluster by time-resolved IR spectroscopy

Solvation plays an essential role in controlling the mechanism and dynamics of chemical reactions in solution. The present study reveals that changes in the local solute-solvent interaction have a great impact on the timescale of solvent rearrangement dynamics. Time-resolved IR spectroscopy has been applied to a hydration rearrangement reaction in the monohydrated 5-hydroxyindole-water cluster induced by photoionization of the solute molecule. The water molecule changes the stable hydration site from the indolic NH site to the substituent OH site, both of which provide a strongly attractive potential for hydration. The rearrangement time constant amounts to 8 ± 2 ns, and is further slowed down by a factor of more than five at lower excess energy. These rearrangement times are slower by about three orders of magnitude than those reported for related systems where the water molecule is repelled from a repulsive part of the interaction potential toward an attractive well. The excess energy dependence of the time constant is well reproduced by RRKM theory. Differences in the reaction mechanism are discussed on the basis of energy relaxation dynamics.

Vibrational predissociation and vibrationally induced isomerization of 3-aminophenol-ammonia

We investigate the vibrational predissociation dynamics of the hydrogen-bonded 3-aminophenol-ammonia cluster (3-AP-NH3) in the OH and NH stretching regions. Vibrational excitation provides enough energy to dissociate the cluster into its constituent 3-AP and NH3 monomers, and we detect the 3-AP fragments via (1 + 1) resonance-enhanced multiphoton ionization (REMPI). The distribution of vibrational states of the 3-AP fragment suggests the presence of two distinct dissociation pathways. The first dissociation channel produces a broad, unstructured feature in the REMPI-action spectrum after excitation of any of the OH or NH stretching vibrations, pointing to a nearly statistical dissociation pathway with extensive coupling among the vibrations in the cluster during the vibrational predissociation. The second dissociation channel produces distinct, resolved features on top of the broad feature but only following excitation of the OH or symmetric NH3 stretch in the cluster. This striking mode-specificity is consistent with strong coupling of these two modes to the dissociation coordinate (the O-H⋯N bond). The presence of clearly resolved transitions to the electronic origin and to the 10a(2) + 10b(2) state of the cis-3-AP isomer shows that vibrational excitation is driving the isomerization of the trans-3-AP-NH3 isomer to the cis-3-AP-NH3 isomer in the course of the dissociation.

Solvation effect on the NH stretching vibrations of solvated aminopyrazine, 2-aminopyridine, and 3-aminopyridine clusters

The vibrational spectra of the hydrated and methanol-solvated aminopyrazine, 2-aminopyridine and 3-aminopyridine in supersonic jets have been measured in terms of IR-UV double-resonance spectroscopy. Comparing the IR spectrum of aminopyrazine with those of 2-aminopyridine and 3-aminopyridine clusters, we determine the solvation structure of aminopyrazine to be a similar cyclic structure as hydrated 2-aminopyridine clusters [Wu, et al., Phys. Chem. Chem. Phys. 2004, 6, 515]. In the case of monohydrated aminopyrazine cluster, one of the normal modes composed of the hydrogen-bonded OH and NH stretching local modes gives the anomalously weak IR intensity, which is ascribed to the cancellation of the dipole moment change between the OH and NH stretching local modes. The solvated 3-aminopyridine clusters forms the hydrogen-bond between the pyridyl nitrogen atom and the OH group, but the amino group is indirectly affected to induce slight blue shift of the NH(2) stretches. This phenomenon is explained by inductive effect where the electron withdrawing from the amino group upon the solvation results in a "quinoid-like" structure of the amino group.

Relaxation dynamics of NH stretching vibrations of 2-aminopyridine and its dimer in a supersonic beam

Picosecond time-resolved IR-UV pump-probe spectroscopy has been carried out to elucidate vibrational energy relaxation (VER) of the NH stretching vibrations of 2-aminopyridine monomer (2AP) and dimer [(2AP)(2)] in supersonic beams. In bare 2AP, intramolecular vibrational energy redistribution (IVR) of the NH vibrations is described by the two-bath mode model, in which the initial vibrational energy flows to the doorway states rapidly (6.5 ps) and then dissipates into the dense bath states with a time constant of approximately 20 ps. No clear difference was observed in the IVR lifetime between the symmetric and asymmetric NH(2) stretch modes. In (2AP)(2), IVR and vibrational predissociation (VP) were involved in VER. It was found that the rate constants of both IVR and VP of the hydrogen-bonded NH stretching vibration are larger than those of the free NH.

Photodissociation of S atom containing amino acid chromophores

Photodissociation of 3-(methylthio)propylamine and cysteamine, the chromophores of S atom containing amino acid methionine and cysteine, respectively, was studied separately in a molecular beam at 193 nm using multimass ion imaging techniques. Four dissociation channels were observed for 3-(methylthio)propylamine, including (1) CH(3)SCH(2)CH(2)CH(2)NH(2)-->CH(3)SCH(2)CH(2)CH(2)NH+H, (2) CH(3)SCH(2)CH(2)CH(2)NH(2)-->CH(3)+SCH(2)CH(2)CH(2)NH(2), (3) CH(3)SCH(2)CH(2)CH(2)NH(2)-->CH(3)S+CH(2)CH(2)CH(2)NH(2), and (4) CH(3)SCH(2)CH(2)CH(2)NH(2)-->CH(3)SCH(2)+CH(2)CH(2)NH(2). Two dissociation channels were observed from cysteamine, including (5) HSCH(2)CH(2)NH(2)-->HS+CH(2)CH(2)NH(2) and (6) HSCH(2)CH(2)NH(2)-->HSCH(2)+CH(2)NH(2). The photofragment translational energy distributions suggest that reaction (1) and parts of the reactions (2), (3), (5) occur on the repulsive excited states. However, reaction (4), (6) occur only after the internal conversion to the electronic ground state. Since the dissociation from an excited state with a repulsive potential energy surface is very fast, it would not be quenched completely even in the condensed phase. Our results indicate that reactions following dissociation may play an important role in the UV photochemistry of S atom containing amino acid chromophores in the condensed phase. A comparison with the potential energy surface from ab initio calculations and branching ratios from RRKM calculations was made.

Hydrogen-bond assisted enormous broadening of infrared spectra of phenol-water cationic cluster: an ab initio mixed quantum-classical study

The infrared spectrum of phenol-water cationic cluster, [PhOH.H2O]+, taken by Sawamura et al. [J. Phys. Chem. 100, 8131 (1996)] is puzzling in that the peak due to the stretching mode of the phenolic OH (3657 cm-1 for a neutral monomer and 3524 cm-1 for PhOH.H2O) seemingly disappears and instead an extremely broad tail extending down to 2900 cm-1 is observed. The present authors theoretically ascribe this anomalous spectrum to an inhomogeneous broadening of the OH stretching peak caused by the hydrogen bond, the strength of which has been greatly enhanced by ionization of the phenyl ring. Indeed they estimate that the peak position is at 2300 cm-1 and the spectral width can become as wide as 1000 cm-1 at the cluster energy of 32 kcal/mol. This surprisingly wide broadening can be generic in hydrogen-bond systems, which in turn is useful to study the nature of the hydrogen-bond assisted dynamics in various systems such as those in DNA and proteins. To study the present system quantitatively, the authors have developed an ab initio mixed quantum-classical method, in which the nuclear motions on an adiabatic ab initio potential surface are treated such that only the OH stretching motion is described quantum mechanically, while all the other remaining modes are treated classically with on-the-fly scheme. This method includes the implementation of many numerical methodologies, which enables it to deal with a relatively large molecular system. With this theoretical method, the authors analyze the present anomalous broadening in a great detail. In particular, they suggest that one can extract direct information about the hydrogen-bond dynamics with respect to the clear correlation between the vibrational excitation energy of the OH stretching and intermolecular distance by means of a time-resolved infrared spectroscopy: Reflecting the slow and wide-range variation of the intermolecular distance of the relevant hydrogen bond, the time-resolved spectrum is predicted to vary (shift) largely covering the wide range of frequency domain. Thus, it is found that the short-time average along a selected trajectory sensitively reflects the change of the intermolecular distance. The authors also study the effect of internal energy on the hydrogen bonding and the OH spectrum.

Picosecond IR-UV pump–probe spectroscopic study on the vibrational energy flow in isolated molecules and clusters

Intramolecular vibrational energy redistribution (IVR) and vibrational predissociation (VP) from the XH stretching vibrations, where X refers to O or C atom, of aromatic molecules and their hydrogen(H)-bonded clusters are investigated by picosecond time-resolved IR-UV pump probe spectroscopy in a supersonic beam. For bare molecules, we mainly focus on IVR of the OH stretch of phenol. We describe the IVR of the OH stretch by a two-step tier model and examine the effect of the anharmonic coupling strength and the density of states on IVR rate and mechanism by using isotope substitution. In the H-bonded clusters of phenol, we show that the relaxation of the OH stretching vibration can be described by a stepwise process and then discuss which process is sensitive to the H-bonding strength. We discuss the difference/similarity of IVR/VP between the "donor" and the "acceptor" sites in phenol-ethylene cluster by exciting the CH stretch vibrations. Finally, we study the vibrational energy transfer in the isolated molecules having the alkyl chain, namely phenylalcanol (PA). In this system, we measure the rate constant of the vibrational energy transfer between the OH stretch and the vibrations of benzene ring which are connected at the both ends of the alkyl chain. This energy transfer can be called "through-bond IVR". We investigate the three factors which are thought to control the energy transfer rate; (1) "OH <--> next CH(2)" coupling, (2) chain length and (3) conformation. We discuss the energy transfer mechanism in PAs by examining these factors.

Infrared Vibrational Autodetachment Spectroscopy of Microsolvated Benzonitrile Radical Anions

Vibrational spectra of microsolvated benzonitrile radical anions (C6H5CN- -S; S = H2O and CH3OH) were measured by probing the electron detachment efficiency in the 3 microm region, representing resonance bands of autodetachment via OH stretching vibrations of the solvent molecules. The hydrogen-bonded OH band for both the cluster anions exhibited a large shift to the lower energy side with approximately 300 cm-1 compared to those for the corresponding neutral clusters. The solvent molecules are bound collinearly to the edge of the CN group of the benzonitrile anion in the cluster structures optimized with the density functional theory, in which the simulated vibrational energies are in good agreement with the observed band positions. Natural population analyses were performed for a qualitative implication in changes of solvent orientation upon electron attachment. Asymmetric band shapes depending on the vibrational modes are discussed with respect to dynamics of the autodetachment process from a theoretical aspect incorporated with density functional calculations.

Picosecond IR−UV Pump−Probe Study on the Vibrational Relaxation of Phenol−Ethylene Hydrogen-Bonded Cluster: Difference of Relaxation Route/Rate between the Donor and the Acceptor Site Excitations

Picosecond time-resolved IR-UV pump-probe spectroscopy has been performed to study intracluster vibrational energy redistribution (ICVR) and vibrational predissociation (VP) for the OH and CH stretch vibrations of phenol-ethylene hydrogen-bonded cluster. The transient UV spectra after the picosecond IR pulse excitation of these modes were observed by 1+1 REMPI via S(1) with a picosecond UV pulse. We have focused on the difference of the energy flow routes and their rates between the donor (phenol) and the acceptor (ethylene) site. Though the transient UV spectra showed a similar broad feature for all the vibrations examined, the time profiles exhibited a remarkable site dependence, as well as substantial mode dependence. Especially, we found a large difference in the early stage of the IVR evolution and the rates, whereas the VP rates were very similar.

The World of Non-Covalent Interactions: 2006

The review focusses on the fundamental importance of non-covalent interactions in nature by illustrating specific examples from chemistry, physics and the biosciences. Laser spectroscopic methods and both ab initio and molecular modelling procedures used for the study of non-covalent interactions in molecular clusters are briefly outlined. The role of structure and geometry, stabilization energy, potential and free energy surfaces for molecular clusters is extensively discussed in the light of the most advanced ab initio computational results for the CCSD(T) method, extrapolated to the CBS limit. The most important types of non-covalent complexes are classified and several small and medium size non-covalent systems, including H-bonded and improper H-bonded complexes, nucleic acid base pairs, and peptides and proteins are discussed with some detail. Finally, we evaluate the interpretation of experimental results in comparison with state of the art theoretical models: this is illustrated for phenol...Ar, the benzene dimer and nucleic acid base pairs. A review with 270 references.

Time-dependent quantum wave-packet description of the π1σ* photochemistry of phenol

The photoinduced hydrogen elimination reaction in phenol via the conical intersections of the dissociative 1pi sigma* state with the 1pi pi* state and the electronic ground state has been investigated by time-dependent quantum wave-packet calculations. A model including three intersecting electronic potential-energy surfaces (S0, 1pi sigma*, and 1pi pi*) and two nuclear degrees of freedom (OH stretching and OH torsion) has been constructed on the basis of accurate ab initio multireference electronic-structure data. The electronic population transfer processes at the conical intersections, the branching ratio between the two dissociation channels, and their dependence on the initial vibrational levels have been investigated by photoexciting phenol from different vibrational levels of its ground electronic state. The nonadiabatic transitions between the excited states and the ground state occur on a time scale of a few tens of femtoseconds if the 1pi pi*-1pi sigma* conical intersection is directly accessible, which requires the excitation of at least one quantum of the OH stretching mode in the 1pi pi* state. It is shown that the node structure, which is imposed on the nuclear wave packet by the initial preparation as well as by the transition through the first conical intersection (1pi pi*-1pi sigma*), has a profound effect on the nonadiabatic dynamics at the second conical intersection (1pi sigma*-S0). These findings suggest that laser control of the photodissociation of phenol via IR mode-specific excitation of vibrational levels in the electronic ground state should be possible.