1
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Unwin J, Razmus WO, Allum F, Harries JR, Kumagai Y, Nagaya K, Britton M, Brouard M, Bucksbaum P, Fushitani M, Gabalski I, Gejo T, Hockett P, Howard AJ, Iwayama H, Kukk E, Lam CS, McManus J, Minns RS, Niozu A, Nishimuro S, Niskanen J, Owada S, Pickering JD, Rolles D, Somper J, Ueda K, Wada SI, Walmsley T, Woodhouse JL, Forbes R, Burt M, Warne EM. Time-Resolved Probing of the Iodobenzene C-Band Using XUV-Induced Electron Transfer Dynamics. ACS PHYSICAL CHEMISTRY AU 2024; 4:620-631. [PMID: 39634650 PMCID: PMC11613270 DOI: 10.1021/acsphyschemau.4c00036] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/13/2024] [Revised: 07/31/2024] [Accepted: 08/01/2024] [Indexed: 12/07/2024]
Abstract
Time-resolved extreme ultraviolet spectroscopy was used to investigate photodissociation within the iodobenzene C-band. The carbon-iodine bond of iodobenzene was photolyzed at 200 nm, and the ensuing dynamics were probed at 10.3 nm (120 eV) over a 4 ps range. Two product channels were observed and subsequently isolated by using a global fitting method. Their onset times and energetics were assigned to distinct electron transfer dynamics initiated following site-selective ionization of the iodine photoproducts, enabling the electronic states of the phenyl fragments to be identified using a classical over-the-barrier model for electron transfer. In combination with previous theoretical work, this allowed the corresponding neutral photochemistry to be assigned to (1) dissociation via the 7B2, 8A2, and 8B1 states to give ground-state phenyl, Ph(X), and spin-orbit excited iodine and (2) dissociation through the 7A1 and 8B2 states to give excited-state phenyl, Ph(A), and ground-state iodine. The branching ratio was determined to be 87 ± 4% Ph(X) and 13 ± 4% Ph(A). Similarly, the corresponding amount of energy deposited into the internal phenyl modes in these channels was determined to be 44 ± 10 and 65 ± 21%, respectively, and upper bounds to the channel rise times were found to be 114 ± 6 and 310 ± 60 fs.
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Affiliation(s)
- James Unwin
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3TA, United
Kingdom
| | - Weronika O. Razmus
- School
of Chemistry, University of Southampton,
Highfield, Southampton SO17 1BJ, United
Kingdom
| | - Felix Allum
- Linac
Coherent Light Source, SLAC National Accelerator
Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
- PULSE
Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - James R. Harries
- National
Institutes for Quantum Science and Technology (QST), SPring-8, 1-1-1
Kouto, Sayo, Hyogo 679-5148, Japan
| | - Yoshiaki Kumagai
- Department
of Applied Physics, Tokyo University of
Agriculture and Technology, Tokyo 184-8588, Japan
| | - Kiyonobu Nagaya
- Department
of Physics, Kyoto University, Kyoto 606-8502, Japan
| | - Mathew Britton
- Linac
Coherent Light Source, SLAC National Accelerator
Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
- PULSE
Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Mark Brouard
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3TA, United
Kingdom
| | - Philip Bucksbaum
- PULSE
Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Mizuho Fushitani
- Department
of Chemistry, Graduate School of Science, Nagoya University, Nagoya, Aichi 464-8602, Japan
| | - Ian Gabalski
- PULSE
Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
- Department
of Applied Physics, Stanford University, Stanford, California 94305-4090, United
States
| | - Tatsuo Gejo
- Graduate
School of Material Science, University of
Hyogo, Kouto 3-2-1, Kamigori-cho, Ako-gun, Hyogo 678-1297, Japan
| | - Paul Hockett
- National Research Council of Canada, 100 Sussex Dr. Ottawa, ON K1A 0R6, Canada
| | - Andrew J. Howard
- PULSE
Institute, SLAC National Accelerator Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
- Department
of Applied Physics, Stanford University, Stanford, California 94305-4090, United
States
| | | | - Edwin Kukk
- Department
of Physics and Astronomy, University of
Turku, Turku FI-20014, Finland
| | - Chow-shing Lam
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3TA, United
Kingdom
| | - Joseph McManus
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3TA, United
Kingdom
| | - Russell S. Minns
- School
of Chemistry, University of Southampton,
Highfield, Southampton SO17 1BJ, United
Kingdom
| | - Akinobu Niozu
- Graduate
School of Advanced Science and Engineering, Hiroshima University, Higashi-Hiroshima 739-8526, Japan
| | - Sekito Nishimuro
- Department
of Chemistry, School of Science, Tokyo Institute
of Technology, 2-12-1 W4-10 Ookayama, Meguro-ku, Tokyo 152-8551, Japan
| | - Johannes Niskanen
- Department
of Physics and Astronomy, University of
Turku, Turku FI-20014, Finland
| | - Shigeki Owada
- Japan Synchrotron Radiation Research Institute, Kouto 1-1-1 Sayo, Hyogo 679-5198, Japan
- RIKEN SPring-8 Center, Kouto 1-1-1 Sayo, Hyogo 679-5148, Japan
| | - James D. Pickering
- School
of Chemistry, George Porter Building, University
of Leicester, Leicester LE1 7RH, United Kingdom
| | - Daniel Rolles
- J.
R. Macdonald Laboratory, Department of Physics, Kansas State University, Manhattan, Kansas 66506, United States
| | - James Somper
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3TA, United
Kingdom
| | - Kiyoshi Ueda
- Department
of Chemistry, Tohoku University, Sendai 980-8578, Japan
| | - Shin-ichi Wada
- Graduate
School of Advanced Science and Engineering, Hiroshima University, Higashi-Hiroshima 739-8526, Japan
| | - Tiffany Walmsley
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3TA, United
Kingdom
| | - Joanne L. Woodhouse
- School
of Chemistry, University of Southampton,
Highfield, Southampton SO17 1BJ, United
Kingdom
| | - Ruaridh Forbes
- Linac
Coherent Light Source, SLAC National Accelerator
Laboratory, 2575 Sand Hill Road, Menlo Park, California 94025, United States
| | - Michael Burt
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3TA, United
Kingdom
| | - Emily M. Warne
- Chemistry
Research Laboratory, Department of Chemistry, University of Oxford, Oxford OX1 3TA, United
Kingdom
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2
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Schunke C, Schweer P, Engelage E, Austin D, Switzer ED, Rahman TS, Morgenstern K. Increased Selectivity in Photolytic Activation of Nanoassemblies Compared to Thermal Activation in On-Surface Ullmann Coupling. ACS NANO 2024; 18:11665-11674. [PMID: 38661485 DOI: 10.1021/acsnano.3c11509] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/26/2024]
Abstract
On-surface synthesis is a powerful method that has emerged recently to fabricate a large variety of atomically precise nanomaterials on surfaces based on polymerization. It is very successful for thermally activated reactions within the framework of heterogeneous catalysis. As a result, it often lacks selectivity. We propose to use selective activation of specific bonds as a crucial ingredient to synthesize desired molecules with high selectivity. In this approach, thermally nonaccessible products are expected to arise in photolytically activated on-surface reactions with high selectivity. We demonstrate for assembled 2,2'-dibromo biphenyl clusters on Cu(111) that the thermal and photolytic activations yield distinctly different products, combining submolecular resolution of individual product molecules in real-space imaging by scanning tunneling microscopy with chemical identification in X-ray photoelectron spectroscopy and supported by ab initio calculations. The photolytically activated Ullmann coupling of 2,2'-dibromo biphenyl is highly selective, with only one identified product. It starkly contrasts the thermal reaction, which yields various products because alternate pathways are activated at the reaction temperature. Our study extends on-surface synthesis to a directed formation of thermally inaccessible products by direct bond activation. It promises tailored reactions of nanomaterials within the framework of on-surface synthesis based on the photolytic activation of specific bonds.
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Affiliation(s)
- Christina Schunke
- Lehrstuhl für Physikalische Chemie I, Ruhr-Universität Bochum, Universitätsstraße 150, Bochum D-44801, Germany
| | - Paul Schweer
- Lehrstuhl für Physikalische Chemie I, Ruhr-Universität Bochum, Universitätsstraße 150, Bochum D-44801, Germany
| | - Elric Engelage
- Lehrstuhl für Organische Chemie II, Ruhr-Universität Bochum, Universitätsstraße 150, Bochum D-44801, Germany
| | - Dave Austin
- Department of Physics, University of Central Florida, Orlando, Florida 32816, United States
| | - Eric D Switzer
- Department of Physics, University of Central Florida, Orlando, Florida 32816, United States
| | - Talat S Rahman
- Department of Physics, University of Central Florida, Orlando, Florida 32816, United States
| | - Karina Morgenstern
- Lehrstuhl für Physikalische Chemie I, Ruhr-Universität Bochum, Universitätsstraße 150, Bochum D-44801, Germany
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3
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Tureček F. UV-vis spectroscopy of gas-phase ions. MASS SPECTROMETRY REVIEWS 2023; 42:206-226. [PMID: 34392556 DOI: 10.1002/mas.21726] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Revised: 06/07/2021] [Accepted: 06/08/2021] [Indexed: 06/13/2023]
Abstract
Photodissociation action spectroscopy has made a great progress in expanding investigations of gas-phase ion structures. This review deals with aspects of gas-phase ion electronic excitations that result in wavelength-dependent dissociation and light emission via fluorescence, chiefly covering the ultraviolet and visible regions of the spectrum. The principles are briefly outlined and a few examples of instrumentation are presented. The main thrust of the review is to collect and selectively present applications of UV-vis action spectroscopy to studies of stable gas-phase ion structures and combinations of spectroscopy with ion mobility, collision-induced dissociation, and ion-ion reactions leading to the generation of reactive intermediates and electronic energy transfer.
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Affiliation(s)
- František Tureček
- Department of Chemistry, University of Washington, Seattle, Washington, USA
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4
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Heald LF, Loftus CL, Gosman RS, Sayres SG. Ion-Pair Formation in n-Butyl Bromide through 5p Ryberg State Predissociation. J Phys Chem A 2022; 126:9651-9657. [PMID: 36528811 DOI: 10.1021/acs.jpca.2c06777] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The ultrafast photodynamics of n-butyl bromide are explored with femtosecond time-resolved mass spectrometry. Absorption of two UV (400 nm) pump photons induces the direct dissociation of the C-Br bond from the A state within 160 fs. Absorption of three UV pump photons excites the molecule into the 5p Rydberg state which undergoes several relaxation pathways including to the ion-pair state. Relaxation to the ion-pair state is tracked through the transient of the C4H9+ fragment and suggests an E state lifetime of 10.8 ± 0.5 ps, in close agreement with the tunneling time of smaller molecules. Predissociation from the 5p Rydberg states leads to the β-elimination of H-Br and formation of C4H8+ within 3.0 ± 0.25 ps. A portion of the excited parent molecule avoids the ion-pair formation and instead relaxes through the Rydberg excited state manifold into the D state within 30.2 ± 0.21 ps.
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Affiliation(s)
- Lauren F Heald
- School of Molecular Sciences, Arizona State University, Tempe, Arizona85287, United States.,Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona85287, United States
| | - Colleen L Loftus
- School of Molecular Sciences, Arizona State University, Tempe, Arizona85287, United States.,Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona85287, United States
| | - Robert S Gosman
- School of Molecular Sciences, Arizona State University, Tempe, Arizona85287, United States.,Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona85287, United States
| | - Scott G Sayres
- School of Molecular Sciences, Arizona State University, Tempe, Arizona85287, United States.,Biodesign Center for Applied Structural Discovery, Arizona State University, Tempe, Arizona85287, United States
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5
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Weike N, Chanut E, Hoppe H, Eisfeld W. Development of a fully coupled diabatic spin-orbit model for the photodissociation of phenyl iodide. J Chem Phys 2022; 156:224109. [PMID: 35705416 DOI: 10.1063/5.0088205] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The theoretical treatment of the quantum dynamics of the phenyl iodide photodissociation requires an accurate analytical potential energy surface (PES) model. This model must also account for spin-orbit (SO) coupling. This study is the first step to construct accurate SO coupled PESs, namely, for the C-I dissociation coordinate. The model is based on the Effective Relativistic Coupling by Asymptotic Representation (ERCAR) method developed over the past ten years. The SO-free Hamiltonian is represented in an asymptotic diabatic basis and then combined with an atomic effective relativistic coupling operator determined analytically. In contrast to the previously studied cases (HI, CH3I), the diabatic basis states are due to excitations in the phenyl fragment rather than the iodine atom. An accurate analytical model of the ab initio reference data is determined in two steps. The first step is a simple reference model describing the data qualitatively. This reference model is corrected through a trained artificial neural-network to achieve high accuracy. The SO-free and the fine structure states resulting from this ERCAR model are discussed extensively in the context of the photodissociation.
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Affiliation(s)
- Nicole Weike
- Theoretische Chemie, Universität Bielefeld, Postfach 100131, D-33501 Bielefeld, Germany
| | - Emma Chanut
- Theoretische Chemie, Universität Bielefeld, Postfach 100131, D-33501 Bielefeld, Germany
| | - Hannes Hoppe
- Theoretische Chemie, Universität Bielefeld, Postfach 100131, D-33501 Bielefeld, Germany
| | - Wolfgang Eisfeld
- Theoretische Chemie, Universität Bielefeld, Postfach 100131, D-33501 Bielefeld, Germany
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6
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Behera B, Das P. HCl elimination in the photolysis of chlorobenzene at 266 nm: An FT-IR spectroscopy and quantum chemical study. Chem Phys Lett 2021. [DOI: 10.1016/j.cplett.2021.138601] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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7
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Vinklárek IS, Suchan J, Rakovský J, Moriová K, Poterya V, Slavíček P, Fárník M. Energy partitioning and spin-orbit effects in the photodissociation of higher chloroalkanes. Phys Chem Chem Phys 2021; 23:14340-14351. [PMID: 34169306 DOI: 10.1039/d1cp01371h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We investigate the photodissociation dynamics of the C-Cl bond in chloroalkanes CH3Cl, n-C3H7Cl, i-C3H7Cl, n-C5H11Cl, combining velocity map imaging (VMI) experiment and direct ab initio dynamical simulations. The Cl fragment kinetic energy distributions (KEDs) from the VMI experiment exhibit a single peak with maximum close to 0.8 eV, irrespective of the alkyl chain length and C-Cl bond position. In contrary to CH3Cl, where less than 10% of the available energy is deposited into the internal excitation of the CH3 fragment, for all higher chloroalkanes around 40% to 60% of the available energy goes into the alkyl fragment excitation. We apply the classical hard spheres and spectator model to explain the energy partitioning, and compare the classical approach with direct ab initio dynamics simulations. The alkyl chain appears to be a soft, energy absorbing unit. We further investigate the role of the spin-orbit effects on the excitation and dynamics. Combining our experimental data with theory allows us to derive the probability of the direct absorption into the triplet electronic state as well as the probabilities for intersystem crossing. The results indicate an increasing direct absorption into the triplet state with increasing alkyl chain length.
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Affiliation(s)
- Ivo S Vinklárek
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic.
| | - Jiří Suchan
- University of Chemistry and Technology, 166 28 Prague 6, Czech Republic.
| | - Jozef Rakovský
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic.
| | - Kamila Moriová
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic.
| | - Viktoriya Poterya
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic.
| | - Petr Slavíček
- University of Chemistry and Technology, 166 28 Prague 6, Czech Republic.
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic.
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8
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Lin KC, Muthiah B, Chang HP, Kasai T, Chang YP. Halogen-related photodissociation in atmosphere: characterisation of atomic halogen, molecular halogen, and hydrogen halide. INT REV PHYS CHEM 2020. [DOI: 10.1080/0144235x.2020.1822590] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- King-Chuen Lin
- Department of Chemistry, National Taiwan University, Taipei, Taiwan
- Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei, Taiwan
| | | | - Hsiu-Pu Chang
- Department of Chemistry, National Taiwan University, Taipei, Taiwan
| | - Toshio Kasai
- Department of Chemistry, National Taiwan University, Taipei, Taiwan
- Institute of Scientific and Industrial Research, Osaka University, Osaka, Japan
| | - Yuan-Pin Chang
- Department of Chemistry, National Sun Yat-sen University, Kaohsiung, Taiwan
- Aerosol Science Research Center, National Sun Yat-sen University, Kaohsiung, Taiwan
- Department of Medicinal and Applied Chemistry, Kaohsiung Medical University, Kaohsiung, Taiwan
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9
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Vinklárek IS, Rakovský J, Poterya V, Fárník M. Different Dynamics of CH3 and Cl Fragments from Photodissociation of CH3Cl in Clusters. J Phys Chem A 2020; 124:7633-7643. [DOI: 10.1021/acs.jpca.0c05926] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ivo S. Vinklárek
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic
- Faculty of Mathematics and PhysicsCharles UniversityKe Karlovu 3121 16Prague 2Czech Republic
| | - Jozef Rakovský
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic
| | - Viktoriya Poterya
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague 8, Czech Republic
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10
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Yong H, Zotev N, Stankus B, Ruddock JM, Bellshaw D, Boutet S, Lane TJ, Liang M, Carbajo S, Robinson JS, Du W, Goff N, Chang Y, Koglin JE, Waters MDJ, Sølling TI, Minitti MP, Kirrander A, Weber PM. Determining Orientations of Optical Transition Dipole Moments Using Ultrafast X-ray Scattering. J Phys Chem Lett 2018; 9:6556-6562. [PMID: 30380873 DOI: 10.1021/acs.jpclett.8b02773] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
Identification of the initially prepared, optically active state remains a challenging problem in many studies of ultrafast photoinduced processes. We show that the initially excited electronic state can be determined using the anisotropic component of ultrafast time-resolved X-ray scattering signals. The concept is demonstrated using the time-dependent X-ray scattering of N-methyl morpholine in the gas phase upon excitation by a 200 nm linearly polarized optical pulse. Analysis of the angular dependence of the scattering signal near time zero renders the orientation of the transition dipole moment in the molecular frame and identifies the initially excited state as the 3p z Rydberg state, thus bypassing the need for further experimental studies to determine the starting point of the photoinduced dynamics and clarifying inconsistent computational results.
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Affiliation(s)
- Haiwang Yong
- Department of Chemistry , Brown University , Providence , Rhode Island 02912 , United States
| | - Nikola Zotev
- School of Chemistry , University of Edinburgh , Edinburgh EH9 3FJ , United Kingdom
| | - Brian Stankus
- Department of Chemistry , Brown University , Providence , Rhode Island 02912 , United States
| | - Jennifer M Ruddock
- Department of Chemistry , Brown University , Providence , Rhode Island 02912 , United States
| | - Darren Bellshaw
- School of Chemistry , University of Edinburgh , Edinburgh EH9 3FJ , United Kingdom
| | - Sébastien Boutet
- SLAC National Accelerator Laboratory , Menlo Park , California 94025 , United States
| | - Thomas J Lane
- SLAC National Accelerator Laboratory , Menlo Park , California 94025 , United States
| | - Mengning Liang
- SLAC National Accelerator Laboratory , Menlo Park , California 94025 , United States
| | - Sergio Carbajo
- SLAC National Accelerator Laboratory , Menlo Park , California 94025 , United States
| | - Joseph S Robinson
- SLAC National Accelerator Laboratory , Menlo Park , California 94025 , United States
| | - Wenpeng Du
- Department of Chemistry , Brown University , Providence , Rhode Island 02912 , United States
| | - Nathan Goff
- Department of Chemistry , Brown University , Providence , Rhode Island 02912 , United States
| | - Yu Chang
- Department of Chemistry , Brown University , Providence , Rhode Island 02912 , United States
| | - Jason E Koglin
- SLAC National Accelerator Laboratory , Menlo Park , California 94025 , United States
| | - Max D J Waters
- Department of Chemistry , University of Copenhagen , Universitetsparken 5 , 2100 Copenhagen , Denmark
| | - Theis I Sølling
- Department of Chemistry , University of Copenhagen , Universitetsparken 5 , 2100 Copenhagen , Denmark
| | - Michael P Minitti
- SLAC National Accelerator Laboratory , Menlo Park , California 94025 , United States
| | - Adam Kirrander
- School of Chemistry , University of Edinburgh , Edinburgh EH9 3FJ , United Kingdom
| | - Peter M Weber
- Department of Chemistry , Brown University , Providence , Rhode Island 02912 , United States
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11
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Chen M, Liang H, He C, Zhao DF, Chen Y. Ultraviolet photodissociation dynamics of m-bromofluorobenzene at around 240 nm. CHINESE J CHEM PHYS 2018. [DOI: 10.1063/1674-0068/31/cjcp1806136] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
Affiliation(s)
- Min Chen
- CAS Center for Excellence in Quantum Information and Quantum Physics, Hefei National Laboratory for Physical Sciences at the Microscale, and Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Hao Liang
- CAS Center for Excellence in Quantum Information and Quantum Physics, Hefei National Laboratory for Physical Sciences at the Microscale, and Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Chao He
- CAS Center for Excellence in Quantum Information and Quantum Physics, Hefei National Laboratory for Physical Sciences at the Microscale, and Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Dong-feng Zhao
- CAS Center for Excellence in Quantum Information and Quantum Physics, Hefei National Laboratory for Physical Sciences at the Microscale, and Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
| | - Yang Chen
- CAS Center for Excellence in Quantum Information and Quantum Physics, Hefei National Laboratory for Physical Sciences at the Microscale, and Department of Chemical Physics, University of Science and Technology of China, Hefei 230026, China
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12
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Stankus B, Zotev N, Rogers DM, Gao Y, Odate A, Kirrander A, Weber PM. Ultrafast photodissociation dynamics of 1,4-diiodobenzene. J Chem Phys 2018; 148:194306. [DOI: 10.1063/1.5031787] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Affiliation(s)
- Brian Stankus
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | - Nikola Zotev
- EaStCHEM, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh EH9 3FJ, United Kingdom
| | - David M. Rogers
- EaStCHEM, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh EH9 3FJ, United Kingdom
| | - Yan Gao
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | - Asami Odate
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
| | - Adam Kirrander
- EaStCHEM, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh EH9 3FJ, United Kingdom
| | - Peter M. Weber
- Department of Chemistry, Brown University, Providence, Rhode Island 02912, USA
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13
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Ashfold MN, Murdock D, Oliver TA. Molecular Photofragmentation Dynamics in the Gas and Condensed Phases. Annu Rev Phys Chem 2017; 68:63-82. [DOI: 10.1146/annurev-physchem-052516-050756] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
Abstract
Exciting a molecule with an ultraviolet photon often leads to bond fission, but the final outcome of the bond cleavage is typically both molecule and phase dependent. The photodissociation of an isolated gas-phase molecule can be viewed as a closed system: Energy and momentum are conserved, and the fragmentation is irreversible. The same is not true in a solution-phase photodissociation process. Solvent interactions may dissipate some of the photoexcitation energy prior to bond fission and will dissipate any excess energy partitioned into the dissociation products. Products that have no analog in the corresponding gas-phase study may arise by, for example, geminate recombination. Here, we illustrate the extent to which dynamical insights from gas-phase studies can inform our understanding of the corresponding solution-phase photochemistry and how, in the specific case of photoinduced ring-opening reactions, solution-phase studies can in some cases reveal dynamical insights more clearly than the corresponding gas-phase study.
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Affiliation(s)
| | - Daniel Murdock
- School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
| | - Thomas A.A. Oliver
- School of Chemistry, University of Bristol, Bristol BS8 1TS, United Kingdom
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14
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Zhu R, Li MD, Du L, Phillips DL. Singlet versus Triplet Excited State Mediated Photoinduced Dehalogenation Reactions of Itraconazole in Acetonitrile and Aqueous Solutions. J Phys Chem B 2017; 121:2712-2720. [PMID: 28281345 DOI: 10.1021/acs.jpcb.6b11934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Photoinduced dehalogenation of the antifungal drug itraconazole (ITR) in acetonitrile (ACN) and ACN/water mixed solutions was investigated using femtosecond and nanosecond time-resolved transient absorption (fs-TA and ns-TA, respectively) and nanosecond time-resolved resonance Raman spectroscopy (ns-TR3) experiments. An excited resonance energy transfer is found to take place from the 4-phenyl-4,5-dihydro-3H-1,2,4-triazol-3-one part of the molecule to the 1,3-dichlorobenzene part of the molecule when ITR is excited by ultraviolet light. This photoexcitation is followed by a fast carbon-halogen bond cleavage that leads to the generation of radical intermediates via either triplet and/or singlet excited states. It is found that the singlet excited state-mediated carbon-halogen cleavage is the predominant dehalogenation process in ACN solvent, whereas a triplet state-mediated carbon-halogen cleavage prefers to occur in the ACN/water mixed solutions. The singlet-to-triplet energy gap is decreased in the ACN/water mixed solvents and this helps facilitate an intersystem crossing process, and thus, the carbon-halogen bond cleavage happens mostly through an excited triplet state in the aqueous solutions examined. The ns-TA and ns-TR3 results also provide some evidence that radical intermediates are generated through a homolytic carbon-halogen bond cleavage via predominantly the singlet excited state pathway in ACN but via mainly the triplet state pathway in the aqueous solutions. In strong acidic solutions, protonation at the oxygen and/or nitrogen atoms of the 1,2,4-triazole-3-one group appears to hinder the dehalogenation reactions. This may offer the possibility that the phototoxicity of ITR due to the generation of aryl or halogen radicals can be reduced by protonation of certain moieties in suitably designed ITR halogen-containing derivatives.
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Affiliation(s)
- Ruixue Zhu
- Department of Chemistry, The University of Hong Kong , Pokfulam Road, Pokfulam, Hong Kong S.A.R., P. R. China
| | - Ming-de Li
- Department of Chemistry, The University of Hong Kong , Pokfulam Road, Pokfulam, Hong Kong S.A.R., P. R. China.,Department of Chemistry, Shantou University , Shantou 515063, China
| | - Lili Du
- Department of Chemistry, The University of Hong Kong , Pokfulam Road, Pokfulam, Hong Kong S.A.R., P. R. China
| | - David Lee Phillips
- Department of Chemistry, The University of Hong Kong , Pokfulam Road, Pokfulam, Hong Kong S.A.R., P. R. China
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15
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Dai X, Song D, Liu K, Su H. Photoinduced C—I bond homolysis of 5-iodouracil: A singlet predissociation pathway. J Chem Phys 2017; 146:025103. [DOI: 10.1063/1.4973650] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Xiaojuan Dai
- Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Di Song
- Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
| | - Kunhui Liu
- Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- College of Chemistry, Beijing Normal University, Beijing 100875, China
| | - Hongmei Su
- Beijing National Laboratory for Molecular Sciences (BNLMS), Institute of Chemistry, Chinese Academy of Sciences, Beijing 100190, China
- University of Chinese Academy of Sciences, Beijing 100049, China
- College of Chemistry, Beijing Normal University, Beijing 100875, China
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16
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Hu C, Tang Y, Song X, Liu Z, Zhang B. Ultrafast Photodissociation Dynamics of Highly Excited Iodobenzene on the C Band. J Phys Chem A 2016; 120:10088-10095. [PMID: 27982598 DOI: 10.1021/acs.jpca.6b09610] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The photodissociation dynamics of highly excited iodobenzene from the C band absorption has been studied by femtosecond time-resolved ion yields techniques. Detailed photodissociation routes are discussed with the aid of high-level, spin-orbit resolved ab initio calculations of 1D potential energy curves. Upon 200 nm excitation within the C band, iodobenzene molecules on 7B2 and 7B1 states decay to 7A1 and 8B2 states through internal conversion in 75 fs, with electronic energy converted into high vibrational energy of 7A1 and 8B2 states. Subsequently, 7A1 and 8B2 states decay through internal vibrational energy redistribution in 540 fs, accompanied by the excited C-I mode and the resulting cleavage of the C-I bond. The overall time for the reaction starting from the phenyl-type modes and ending in final C-I fragmentation for I(2P3/2) production is 1.2 ps.
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Affiliation(s)
- Chunlong Hu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071, P. R. China.,University of Chinese Academy of Sciences , Beijing 100049, P. R. China
| | - Ying Tang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071, P. R. China.,University of Chinese Academy of Sciences , Beijing 100049, P. R. China
| | - Xinli Song
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071, P. R. China.,University of Chinese Academy of Sciences , Beijing 100049, P. R. China
| | - Zhiming Liu
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071, P. R. China.,University of Chinese Academy of Sciences , Beijing 100049, P. R. China
| | - Bing Zhang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences , Wuhan 430071, P. R. China.,University of Chinese Academy of Sciences , Beijing 100049, P. R. China
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17
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Abstract
Photochemistry is an important tool in organic synthesis that has largely been underdeveloped in comparison to thermal activation. Recent advances in technology have ushered in a new era in synthetic photochemistry. The emergence of photocatalysis, which exploits sensitizers for the absorption of visible light, has provided organic chemists with a new route to the generation of radical intermediates for synthesis. Of particular interest is the development of Cu-based complexes for photocatalysis, which possess variable photophysical properties and can display complementary reactivity with common photocatalysts based on heavier transition metals such as Ru or Ir. Heteroleptic Cu-based sensitizers incorporating the presence of both a bisphosphine and diamine ligand bound to the copper center are a promising class of photocatalysts. Their synthesis is a single step, often involving only precipitation for purification. In addition, it was shown that the sensitizers could be formed in situ in the reaction mixture, simplifying the experimental setup. The heteroleptic nature of the Cu-complexes also affords opportunities to fine-tune properties. For example, structurally rigidified bisphosphines reinforce geometries about the metal center to extend the excited state lifetime. Variation of the diamine ligand can influence the excited state oxidation/reduction potentials and optical absorbances. The heteroleptic complex Cu(XantPhos)(neo)BF4 has demonstrated utility in the synthesis of helical polyaromatic carbocycles. The synthesis of [5]helicene, a relatively simple member of the helicene family, was improved from the existing UV-light mediated method by eliminating the formation of unwanted byproducts. In addition, the Cu-based sensitizers also promoted the formation of novel pyrene/helicene hybrids for materials science applications. The synthetic methods that were developed were augmented when combined with continuous flow technology. The irradiation of reaction mixtures as they are pumped through small diameter tubing provides a more homogeneous and increased photon flux compared with irradiation in round-bottom flasks or other batch reactors. The value of continuous flow methods is also evident when examining UV-light photochemistry, where the simple and safe experimental set-ups allow for further exploration of high energy light for synthetic purposes. The synthesis of functionalized complex carbazoles was also studied using both a visible light method exploiting a heteroleptic copper-based sensitizer and a UV-light mediated method. It was demonstrated that both the photocatalysis methods and UV light photochemistries were rendered more user-friendly, safe, and reproducible when using continuous flow methods. Interestingly, the two photochemical methods often afford contrasting selectivities as a result of their inherently different mechanisms. It can be expected that the complementarity of the various photochemical methods will be an asset to synthetic chemists as the field continues to evolve.
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Affiliation(s)
- Augusto C. Hernandez-Perez
- Département de Chimie
and Centre for Green Chemistry and Catalysis, Université de Montréal, CP 6128 Station Downtown, Montréal, Québec H3C 3J7, Canada
| | - Shawn K. Collins
- Département de Chimie
and Centre for Green Chemistry and Catalysis, Université de Montréal, CP 6128 Station Downtown, Montréal, Québec H3C 3J7, Canada
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18
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Bhattacherjee A, Attar AR, Leone SR. Transition state region in the A-Band photodissociation of allyl iodide—A femtosecond extreme ultraviolet transient absorption study. J Chem Phys 2016; 144:124311. [DOI: 10.1063/1.4944930] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Aditi Bhattacherjee
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Andrew R. Attar
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
| | - Stephen R. Leone
- Department of Chemistry, University of California, Berkeley, California 94720, USA
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, USA
- Department of Physics, University of California, Berkeley, California 94720, USA
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19
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Stankus B, Budarz JM, Kirrander A, Rogers D, Robinson J, Lane TJ, Ratner D, Hastings J, Minitti MP, Weber PM. Femtosecond photodissociation dynamics of 1,4-diiodobenzene by gas-phase X-ray scattering and photoelectron spectroscopy. Faraday Discuss 2016; 194:525-536. [DOI: 10.1039/c6fd00135a] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a multifaceted investigation into the initial photodissociation dynamics of 1,4-diiodobenzene (DIB) following absorption of 267 nm radiation. We combine ultrafast time-resolved photoelectron spectroscopy and X-ray scattering experiments performed at the Linac Coherent Light Source (LCLS) to study the initial electronic excitation and subsequent rotational alignment, and interpret the experiments in light of Complete Active Space Self-Consistent Field (CASSCF) calculations of the excited electronic landscape. The initially excited state is found to be a bound 1B1 surface, which undergoes ultrafast population transfer to a nearby state in 35 ± 10 fs. The internal conversion most likely leads to one or more singlet repulsive surfaces that initiate the dissociation. This initial study is an essential and prerequisite component of a comprehensive study of the complete photodissociation pathway(s) of DIB at 267 nm. Assignment of the initially excited electronic state as a bound state identifies the mechanism as predissociative, and measurement of its lifetime establishes the time between excitation and initiation of dissociation, which is crucial for direct comparison of photoelectron and scattering experiments.
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Affiliation(s)
| | - James M. Budarz
- Dept. of Chemistry
- Brown University
- Providence
- USA
- SLAC National Accelerator Laboratory
| | - Adam Kirrander
- EaStCHEM
- School of Chemistry
- University of Edinburgh
- Edinburgh EH9 3FJ
- UK
| | - David Rogers
- EaStCHEM
- School of Chemistry
- University of Edinburgh
- Edinburgh EH9 3FJ
- UK
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20
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Hernandez-Perez AC, Caron A, Collins SK. Photochemical Synthesis of Complex Carbazoles: Evaluation of Electronic Effects in Both UV- and Visible-Light Methods in Continuous Flow. Chemistry 2015; 21:16673-8. [PMID: 26395034 DOI: 10.1002/chem.201502661] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2015] [Indexed: 02/06/2023]
Abstract
An evaluation of both a visible-light- and UV-light-mediated synthesis of carbazoles from various triarylamines with differing electronic properties under continuous-flow conditions has been conducted. In general, triarylamines bearing electron-rich groups tend to produce higher yields than triarylamines possessing electron-withdrawing groups. The incorporation of nitrogen-based heterocycles, as well as halogen-containing arenes in carbazole skeletons, was well tolerated, and often synthetically useful complementarity was observed between the UV-light and visible-light (photoredox) methods.
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Affiliation(s)
- Augusto C Hernandez-Perez
- Département de Chimie, Centre for Green Chemistry and Catalysis, Université de Montréal, CP 6128 Station Downtown, Montréal, Québec H3C 3J7 (Canada)
| | - Antoine Caron
- Département de Chimie, Centre for Green Chemistry and Catalysis, Université de Montréal, CP 6128 Station Downtown, Montréal, Québec H3C 3J7 (Canada)
| | - Shawn K Collins
- Département de Chimie, Centre for Green Chemistry and Catalysis, Université de Montréal, CP 6128 Station Downtown, Montréal, Québec H3C 3J7 (Canada).
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21
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Oh HB, Moon B. Radical-driven peptide backbone dissociation tandem mass spectrometry. MASS SPECTROMETRY REVIEWS 2015; 34:116-132. [PMID: 24863492 DOI: 10.1002/mas.21426] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/18/2012] [Revised: 05/06/2013] [Accepted: 11/20/2013] [Indexed: 06/03/2023]
Abstract
In recent years, a number of novel tandem mass spectrometry approaches utilizing radical-driven peptide gas-phase fragmentation chemistry have been developed. These approaches show a peptide fragmentation pattern quite different from that of collision-induced dissociation (CID). The peptide fragmentation features of these approaches share some in common with electron capture dissociation (ECD) or electron transfer dissociation (ETD) without the use of sophisticated equipment such as a Fourier-transform mass spectrometer. For example, Siu and coworkers showed that CID of transition metal (ligand)-peptide ternary complexes led to the formation of peptide radical ions through dissociative electron transfer (Chu et al., 2000. J Phys Chem B 104:3393-3397). The subsequent collisional activation of the generated radical ions resulted in a number of characteristic product ions, including a, c, x, z-type fragments and notable side-chain losses. Another example is the free radical initiated peptide sequencing (FRIPS) approach, in which Porter et al. and Beauchamp et al. independently introduced a free radical initiator to the primary amine group of the lysine side chain or N-terminus of peptides (Masterson et al., 2004. J Am Chem Soc 126:720-721; Hodyss et al., 2005 J Am Chem Soc 127: 12436-12437). Photodetachment of gaseous multiply charged peptide anions (Joly et al., 2008. J Am Chem Soc 130:13832-13833) and UV photodissociation of photolabile radical precursors including a C-I bond (Ly & Julian, 2008. J Am Chem Soc 130:351-358; Ly & Julian, 2009. J Am Soc Mass Spectrom 20:1148-1158) also provide another route to generate radical ions. In this review, we provide a brief summary of recent results obtained through the radical-driven peptide backbone dissociation tandem mass spectrometry approach.
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Affiliation(s)
- Han Bin Oh
- Department of Chemistry, Sogang University, Seoul, 121-742, Republic of Korea
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22
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Hall GE, Loo RO, Harri HP, Sivakumar N, Chawla GK, Houston PL, Chandler DW, Hepburn JW, Burak I. Vector Correlations in the Photodissociation of CH3I, OCS, and Glyoxal. ACTA ACUST UNITED AC 2014. [DOI: 10.1002/bbpc.198800063] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
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23
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Vaida ME, Bernhardt TM. Surface-Aligned Femtochemistry: Molecular Reaction Dynamics on Oxide Surfaces. SPRINGER SERIES IN CHEMICAL PHYSICS 2014. [DOI: 10.1007/978-3-319-02051-8_10] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/04/2022]
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24
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25
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Hansen CS, Kirk BB, Blanksby SJ, O'Hair RAJ, Trevitt AJ. UV photodissociation action spectroscopy of haloanilinium ions in a linear quadrupole ion trap mass spectrometer. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2013; 24:932-940. [PMID: 23609184 DOI: 10.1007/s13361-013-0615-z] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/20/2013] [Revised: 03/05/2013] [Accepted: 03/10/2013] [Indexed: 06/02/2023]
Abstract
UV-vis photodissociation action spectroscopy is becoming increasingly prevalent because of advances in, and commercial availability of, ion trapping technologies and tunable laser sources. This study outlines in detail an instrumental arrangement, combining a commercial ion-trap mass spectrometer and tunable nanosecond pulsed laser source, for performing fully automated photodissociation action spectroscopy on gas-phase ions. The components of the instrumentation are outlined, including the optical and electronic interfacing, in addition to the control software for automating the experiment and performing online analysis of the spectra. To demonstrate the utility of this ensemble, the photodissociation action spectra of 4-chloroanilinium, 4-bromoanilinium, and 4-iodoanilinium cations are presented and discussed. Multiple photoproducts are detected in each case and the photoproduct yields are followed as a function of laser wavelength. It is shown that the wavelength-dependent partitioning of the halide loss, H loss, and NH3 loss channels can be broadly rationalized in terms of the relative carbon-halide bond dissociation energies and processes of energy redistribution. The photodissociation action spectrum of (phenyl)Ag2 (+) is compared with a literature spectrum as a further benchmark.
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26
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Kirk BB, Trevitt AJ, Blanksby SJ, Tao Y, Moore BN, Julian RR. Ultraviolet Action Spectroscopy of Iodine Labeled Peptides and Proteins in the Gas Phase. J Phys Chem A 2012; 117:1228-32. [DOI: 10.1021/jp305470j] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Affiliation(s)
- Benjamin B. Kirk
- ARC Centre of Excellence for
Free Radical Chemistry and Biotechnology, School of Chemistry, University of Wollongong, New South Wales 2522, Australia
| | - Adam J. Trevitt
- ARC Centre of Excellence for
Free Radical Chemistry and Biotechnology, School of Chemistry, University of Wollongong, New South Wales 2522, Australia
| | - Stephen J. Blanksby
- ARC Centre of Excellence for
Free Radical Chemistry and Biotechnology, School of Chemistry, University of Wollongong, New South Wales 2522, Australia
| | - Yuanqi Tao
- Department of Chemistry, University of California, Riverside, California 92521,
United States
| | - Benjamin N. Moore
- Department of Chemistry, University of California, Riverside, California 92521,
United States
| | - Ryan R. Julian
- Department of Chemistry, University of California, Riverside, California 92521,
United States
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27
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Chen J, Cui W, Giblin D, Gross ML. New protein footprinting: fast photochemical iodination combined with top-down and bottom-up mass spectrometry. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2012; 23:1306-18. [PMID: 22669760 PMCID: PMC3630512 DOI: 10.1007/s13361-012-0403-1] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2012] [Revised: 04/25/2012] [Accepted: 04/25/2012] [Indexed: 05/02/2023]
Abstract
We report a new approach for the fast photochemical oxidation of proteins (FPOP) whereby iodine species are used as the modifying reagent. We generate the radicals by photolysis of iodobenzoic acid at 248 nm; the putative iodine radical then rapidly modifies the target protein. This iodine-radical labeling is sensitive, tunable, and site-specific, modifying only histidine and tyrosine residues in contrast to OH radicals that modify 14 amino-acid side chains. We iodinated myoglobin (Mb) and apomyoglobin (aMb) in their native states and analyzed the outcome by both top-down and bottom-up proteomic strategies. Top-down sequencing selects a certain level (addition of one I, two I's) of modification and determines the major components produced in the modification reaction, whereas bottom-up reveals details for each modification site. Tyr146 is found to be modified for aMb but less so for Mb. His82, His93, and His97 are at least 10 times more modified for aMb than for Mb, in agreement with NMR studies. For carbonic anhydrase and its apo form, there are no significant differences of the modification extents, indicating their similarity in conformation and providing a control for this approach. For lispro insulin, insulin-EDTA, and insulin complexed with zinc, iodination yields are sensitive to differences in insulin oligomerization state. The iodine radical labeling is a promising addition to protein footprinting methods, offering higher specificity and lower reactivity than ∙OH and SO(4)(-∙), two other radicals already employed in FPOP.
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Affiliation(s)
- Jiawei Chen
- Department of Chemistry, Washington University, One Brookings Drive, St. Louis, MO 63130, USA
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28
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Murdock D, Crow MB, Ritchie GAD, Ashfold MNR. UV photodissociation dynamics of iodobenzene: Effects of fluorination. J Chem Phys 2012; 136:124313. [DOI: 10.1063/1.3696892] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
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29
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Vaida ME, Bernhardt TM. Surface-aligned femtochemistry: Photoinduced reaction dynamics of CH3I and CH3Br on MgO(100). Faraday Discuss 2012; 157:437-49; discussion 475-500. [DOI: 10.1039/c2fd20104f] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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30
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Li WZ, Chen SF, Liu YJ. Relativistic multireference calculation of photodissociation of o-, m-, and p-bromofluorobenzene. J Chem Phys 2011; 134:114303. [DOI: 10.1063/1.3565445] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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31
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Paul D, Kim HK, Hong KR, Kim TK. Dynamics of Br(2Pj) Formation in the Photodissociation of Bromobenzene. B KOREAN CHEM SOC 2011. [DOI: 10.5012/bkcs.2011.32.2.659] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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32
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Ly T, Zhang X, Sun Q, Moore B, Tao Y, Julian RR. Rapid, quantitative, and site specific synthesis of biomolecular radicals from a simple photocaged precursor. Chem Commun (Camb) 2011; 47:2835-7. [PMID: 21258679 DOI: 10.1039/c0cc03363d] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Novel p-iodobenzoate-based labelling reagents are shown to be effective photocaged precursors for synthesizing biomolecular radicals site-selectively in the gaseous and condensed phases. In vacuo, a single pulse of UV photons (266 nm) is sufficient to quantitatively photolyse the C-I bond. In aqueous solutions, the photolysis half-life is estimated to be 2.5 minutes when irradiating with a 15 W compact fluorescent lamp (254 nm).
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Affiliation(s)
- Tony Ly
- Department of Chemistry, University of California, Riverside, Riverside, CA, USA.
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33
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Sage AG, Oliver TAA, Murdock D, Crow MB, Ritchie GAD, Harvey JN, Ashfold MNR. nσ* and πσ* excited states in aryl halide photochemistry: a comprehensive study of the UV photodissociation dynamics of iodobenzene. Phys Chem Chem Phys 2011; 13:8075-93. [DOI: 10.1039/c0cp02390f] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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34
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35
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Liu YJ, Tian YC, Fang WH. Spin-orbit ab initio investigation of photolysis of o-, m-, and p-iodotoluene. J Chem Phys 2010; 132:014306. [PMID: 20078160 DOI: 10.1063/1.3290952] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
The multistate second order multiconfigurational perturbation theory in conjunction with spin-orbit interaction through complete active space state interaction (MS-CASPT2/CASSI-SO) was employed to calculate the potential energy curves for the ground and low-lying excited states of o-, m-, and p-iodotoluene along the assumed photolysis reaction coordinates. The mechanism and channels leading to products I((2)P(3/2)) and I( *)((2)P(3/2)) for o-, m-, and p-iodotoluene photolysis at 266 and 304 nm were elucidated with the computed potential energy curves and the surface crossing points. The effects of methyl substituent and heavy atom on the photodissociation mechanism were discussed by the comparison to related alkyl and aryl halides.
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Affiliation(s)
- Ya-Jun Liu
- College of Chemistry, Beijing Normal University, Beijing 100875, China.
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36
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Montero R, Conde AP, Longarte A, Castaño F, Corrales ME, de Nalda R, Bañares L. Femtosecond time-resolved photophysics and photodissociation dynamics of 1-iodonaphthalene. Phys Chem Chem Phys 2010; 12:7988-93. [DOI: 10.1039/c000121j] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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37
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Ly T, Yin S, Loo JA, Julian RR. Electron-induced dissociation of protonated peptides yields backbone fragmentation consistent with a hydrogen-deficient radical. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2009; 23:2099-2101. [PMID: 19489022 DOI: 10.1002/rcm.4117] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
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38
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Cao ZZ, Wei ZR, Hua LQ, Hu CJ, Zhang S, Zhang B. Ultrafast dynamics of o-bromofluorobenzene studied by time-resolved photoelectron imaging. Chemphyschem 2009; 10:1299-304. [PMID: 19343750 DOI: 10.1002/cphc.200900096] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Photodissociation dynamics and rotational wave packet coherences of o-bromofluorobenzene are studied by femtosecond time-resolved photoelectron imaging [figure: see text]. The decay of different photoelectron rings shows the population decay of states from which the lifetimes of different states are determined. The variation of photoelectron angular distributions reflects the evolution of rotational coherences.Photodissociation dynamics and rotational wave packet coherences of o-bromofluorobenzene are studied by femtosecond time-resolved photoelectron imaging (TR-PEI) spectroscopy combined with the (1+2') resonance-enhanced multiphoton ionization (REMPI). Photoelectron kinetic energy and angular distributions indicate ionization dynamics from some Rydberg states at the (1+1') photon energy. The lifetimes of the S(1) (A') and T(2) (A') states are determined from the decay of the photoelectron signals to be 38 ps and 27 ps. The electron population decay of the two states is attributed to predissociation and tunneling dissociation. The variation of time-dependent anisotropy parameters in the first 5 ps shows the rotational wave coherences of molecule.
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Affiliation(s)
- Zhen-Zhou Cao
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, PR China
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Chapter 1 Multireference and Spin–Orbit Calculations on Photodissociations of Hydrocarbon Halides. ADVANCES IN QUANTUM CHEMISTRY 2009. [DOI: 10.1016/s0065-3276(08)00401-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
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40
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Ruan CB, Wang HG, Zhu HL, Zheng X, Phillips DL. Resonance Raman study of the A-band short-time photodissociation dynamics of 2,5-di-iodothiophene. J Chem Phys 2008; 129:214506. [DOI: 10.1063/1.3026585] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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41
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Zhang XP, Wei ZR, Lee WB, Chao TJ, Lin KC. Photodissociation of dibromobenzenes at 266 nm by the velocity imaging technique. Chemphyschem 2008; 9:1721-8. [PMID: 18624286 DOI: 10.1002/cphc.200800180] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Abstract
A velocity imaging technique combined with (2+1) resonance-enhanced multiphoton ionization (REMPI) is used to detect the primary Br((2)P(3/2)) fragment in the photodissociation of o-, m-, and p-dibromobenzene at 266 nm. The obtained translational energy distributions suggest that the Br fragments are produced via two dissociation channels. For o- and m-dibromobenzene, the slow channel that yields an anisotropy parameter close to zero is proposed to stem from excitation of the lowest excited singlet (pi,pi*) state followed by predissociation along a repulsive triplet (n,sigma*) state localized on the C-Br bond. The fast channel that gives rise to an anisotropy parameter of 0.53-0.73 is attributed to a bound triplet state with smaller dissociation barrier. For p-dibromobenzene, the dissociation rates are reversed, because the barrier for the bound triplet state becomes higher than the singlet-triplet crossing energy. The fractions of translational energy release are determined to be 6-8 and 29-40 % for the slow and fast channels, respectively; the quantum yields are 0.2 and 0.8, and are insensitive to the position of the substituent. The Br fragmentation from bromobenzene and bromofluorobenzenes at the same photolyzing wavelength is also compared to understand the effect of the number of halogen atoms on the phenyl ring.
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Affiliation(s)
- Xiao-Peng Zhang
- Department of Chemistry, National Taiwan University, Taipei 106, Taiwan
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Zhang XP, Wei ZR, Tang Y, Chao TJ, Zhang B, Lin KC. Halogen Effect on the Photodissociation Mechanism for Gas-Phase Bromobenzene and Iodobenzene. Chemphyschem 2008; 9:1130-6. [DOI: 10.1002/cphc.200700831] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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43
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Vázquez SA, Martínez-Núñez E. Translational energy distributions in the photodissociation of fluorobenzene. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2007.12.008] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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44
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Trushin S, Kosma K, Fuß W, Schmid W. Wavelength-independent ultrafast dynamics and coherent oscillation of a metal–carbon stretch vibration in photodissociation of Cr(CO)6 in the region of 270–345nm. Chem Phys 2008. [DOI: 10.1016/j.chemphys.2007.09.057] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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45
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Gilchrist A, Hancock G, Peverall R, Richmond G, Ritchie GAD, Taylor S. Methyl Iodide Photodissociation at 193 nm: The I(2P1/2) Quantum Yield. J Phys Chem A 2008; 112:4531-6. [DOI: 10.1021/jp710799k] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- A. Gilchrist
- Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford, OX1 3QZ, United Kingdom
| | - G. Hancock
- Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford, OX1 3QZ, United Kingdom
| | - R. Peverall
- Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford, OX1 3QZ, United Kingdom
| | - G. Richmond
- Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford, OX1 3QZ, United Kingdom
| | - G. A. D. Ritchie
- Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford, OX1 3QZ, United Kingdom
| | - S. Taylor
- Physical and Theoretical Chemistry Laboratory, Oxford University, South Parks Road, Oxford, OX1 3QZ, United Kingdom
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Liu YJ, Tian YC, Fang WH. Spin-orbit ab initio investigation of the photolysis of o-, m-, and p-bromotoluene. J Chem Phys 2008; 128:064307. [DOI: 10.1063/1.2837464] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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47
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Zhang DF, Zhang B. Photodissociation Exploration for Near-Visible UV Absorption of Molecular Bromine. CHINESE J CHEM PHYS 2008. [DOI: 10.1088/1674-0068/21/01/12-20] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
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Tang Y, Lee WB, Zhang B, Lin KC. Photodissociation Dynamics of Bromofluorobenzenes Using Velocity Imaging Technique. J Phys Chem A 2008; 112:1421-9. [DOI: 10.1021/jp710212r] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ying Tang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, P. R. China, and Department of Chemistry, National Taiwan University, Taipei 106, and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
| | - Wei-Bin Lee
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, P. R. China, and Department of Chemistry, National Taiwan University, Taipei 106, and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
| | - Bing Zhang
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, P. R. China, and Department of Chemistry, National Taiwan University, Taipei 106, and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
| | - King-Chuen Lin
- State Key Laboratory of Magnetic Resonance and Atomic and Molecular Physics, Wuhan Institute of Physics and Mathematics, Chinese Academy of Sciences, Wuhan 430071, P. R. China, and Department of Chemistry, National Taiwan University, Taipei 106, and Institute of Atomic and Molecular Sciences, Academia Sinica, Taipei 106, Taiwan
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Karlsson D, Anders Borg O, Lunell S, Davidsson J, Karlsson HO. Experimental and theoretical study of the photodissociation of bromo-3-fluorobenzene. J Chem Phys 2008; 128:034307. [PMID: 18205498 DOI: 10.1063/1.2819093] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The UV photodissociation of bromo-3-fluorobenzene under collisionless conditions has been studied as a function of the excitation wavelength between 255 and 265 nm. The experiments were performed using ultrafast pump-probe laser spectroscopy. To aid in the interpretation of the results, it was necessary to extend the theoretical framework substantially compared to previous studies, to also include quantum dynamical simulations employing a two-dimensional nuclear Hamiltonian. The nonadiabatic potential energy surfaces (PES) were parameterized against high-level MS-CASTP2 quantum chemical calculations, using both the C-Br distance and the out-of-plane bending of the bromine as nuclear parameters. We show that the wavelength dependence of the photodissociation via the S0-->1pipi*-->1pisigma* channel, accessible with a approximately 260 nm pulse, is captured in this model. We thereby present the first correlation between experiments and theory within the quantitative regime.
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Affiliation(s)
- Daniel Karlsson
- Department of Photochemistry and Molecular Science, Uppsala University, Box 523, SE-75120 Uppsala, Sweden
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Braun A, Drabbels M. Photodissociation of alkyl iodides in helium nanodroplets. III. Recombination. J Chem Phys 2007; 127:114305. [PMID: 17887835 DOI: 10.1063/1.2767263] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The recombination of fragments resulting from the photodissociation of (fluorinated) alkyl iodides in helium nanodroplets at a wavelength of 266 nm has been investigated by means of ion imaging techniques. It is found that in the case of CH3I an appreciable fraction of the fragments recombine in the aftermath of the photolysis. The proposed mechanism involves a complete translational relaxation of both photofragments inside the nanodroplets followed by geminate recombination of the fragments. In contrast with CH3I, no recombination is observed for CF3I. This is attributed to the larger masses and the different initial kinetic energies of the fragments produced by the photolysis of CF3I, which strongly diminishes the fragment thermalization efficiency.
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Affiliation(s)
- Andreas Braun
- Laboratoire de Chimie Physique Moléculaire, Ecole Polytechnique Fédéral de Lausanne (EPFL), CH-1015 Lausanne, Switzerland
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