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Freibert A, Mendive-Tapia D, Huse N, Vendrell O. Time-Dependent Resonant Inelastic X-ray Scattering of Pyrazine at the Nitrogen K-Edge: A Quantum Dynamics Approach. J Chem Theory Comput 2024; 20:2167-2180. [PMID: 38315564 PMCID: PMC10938531 DOI: 10.1021/acs.jctc.3c01259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 12/31/2023] [Accepted: 01/03/2024] [Indexed: 02/07/2024]
Abstract
We calculate resonant inelastic X-ray scattering spectra of pyrazine at the nitrogen K-edge in the time domain including wavepacket dynamics in both the valence and core-excited state manifolds. Upon resonant excitation, we observe ultrafast non-adiabatic population transfer between core-excited states within the core-hole lifetime, leading to molecular symmetry distortions. Importantly, our time-domain approach inherently contains the ability to manipulate the dynamics of this process by detuning the excitation energy, which effectively shortens the scattering duration. We also explore the impact of pulsed incident X-ray radiation, which provides a foundation for state-of-the-art time-resolved experiments with coherent pulsed light sources.
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Affiliation(s)
- Antonia Freibert
- Department
of Physics, University of Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
- Theoretical
Chemistry, Institute of Physical Chemistry, Heidelberg University, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
| | - David Mendive-Tapia
- Theoretical
Chemistry, Institute of Physical Chemistry, Heidelberg University, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
| | - Nils Huse
- Department
of Physics, University of Hamburg, Luruper Chaussee 149, 22761 Hamburg, Germany
| | - Oriol Vendrell
- Theoretical
Chemistry, Institute of Physical Chemistry, Heidelberg University, Im Neuenheimer Feld 229, 69120 Heidelberg, Germany
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2
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Guthmuller J. Sum-over-state expressions including second-order Herzberg-Teller effects for the calculation of absorption and resonance Raman intensities. J Chem Phys 2021; 155:084107. [PMID: 34470349 DOI: 10.1063/5.0057731] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The sum-over-state expressions are derived to calculate the second-order Herzberg-Teller (HT) effects in absorption and resonance Raman spectroscopies. These effects depend on the second derivatives of the transition dipole moment with respect to the vibrational coordinates. The method is applied to the molecule of 1,3-butadiene using density functional theory calculations. It is found that the second-order HT effects are significant for both absorption and resonance Raman intensities, and that the calculated spectra are in good agreement with the experimental data. The second-order HT effects originate from diagonal elements of the second derivatives matrix, whereas non-diagonal elements have a negligible impact on the intensities of 1,3-butadiene.
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Affiliation(s)
- Julien Guthmuller
- Institute of Physics and Computer Science, Faculty of Applied Physics and Mathematics, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
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3
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Busson B, Farhat M, Nini Teunda PJ, Roy S, Jarisz T, Hore DK. All-experimental analysis of doubly resonant sum-frequency generation spectra: Application to aggregated rhodamine films. J Chem Phys 2021; 154:224704. [PMID: 34241238 DOI: 10.1063/5.0048787] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A new method is proposed to analyze Doubly Resonant infrared-visible Sum-Frequency Generation (DR-SFG) spectra. Based on the transform technique, this approach is free from assumptions about vibronic modes, energies, or line widths and accurately captures through the overlap spectral function all required aspects of the vibronic structure from simple experimental linear absorption spectra. Details and implementation of the method are provided along with three examples treating rhodamine thin films about one monolayer thick. The technique leads to a perfect agreement between experiment and simulations of the visible DR-SFG line shapes, even in the case of complex intermolecular interactions resulting from J-aggregated chromophores in heterogeneous films. For films with mixed H- and J-aggregates, separation of their responses shows that the J-aggregate DR-SFG response is dominant. Our analysis also accounts for the unexplained results published in the early times of DR-SFG experiments.
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Affiliation(s)
- Bertrand Busson
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR 8000, 91405 Orsay, France
| | - Maissa Farhat
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR 8000, 91405 Orsay, France
| | | | - Sandra Roy
- Department of Chemistry, University of Victoria, Victoria, British Columbia V8W 3V6, Canada
| | - Tasha Jarisz
- Department of Chemistry, University of Victoria, Victoria, British Columbia V8W 3V6, Canada
| | - Dennis K Hore
- Department of Chemistry, University of Victoria, Victoria, British Columbia V8W 3V6, Canada
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4
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Busson B. Doubly resonant SFG and DFG spectroscopies: An analytic model for data analysis including distorted and rotated vibronic levels. I. Theory. J Chem Phys 2020; 153:174701. [DOI: 10.1063/5.0022760] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022] Open
Affiliation(s)
- Bertrand Busson
- Université Paris-Saclay, CNRS, Institut de Chimie Physique, UMR 8000, 91405 Orsay, France
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5
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Walter M, Moseler M. Ab Initio Wavelength-Dependent Raman Spectra: Placzek Approximation and Beyond. J Chem Theory Comput 2019; 16:576-586. [DOI: 10.1021/acs.jctc.9b00584] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]
Affiliation(s)
- Michael Walter
- Fraunhofer IWM, MikroTribologie Centrum μTC, Wöhlerstrasse 11, D-79108 Freiburg, Germany
- FIT Freiburg Centre for Interactive Materials and Bioinspired Technologies, Georges-Köhler-Allee 105, 79110 Freiburg, Germany
- Cluster of Excellence livMatS @ FIT − Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, D-79110 Freiburg, Germany
| | - Michael Moseler
- Fraunhofer IWM, MikroTribologie Centrum μTC, Wöhlerstrasse 11, D-79108 Freiburg, Germany
- Cluster of Excellence livMatS @ FIT − Freiburg Center for Interactive Materials and Bioinspired Technologies, University of Freiburg, Georges-Köhler-Allee 105, D-79110 Freiburg, Germany
- Physikalisches Institut, Universität Freiburg, Herrmann-Herder-Straße 3, D-79104 Freiburg, Germany
- Freiburger Materialforschungszentrum, Universität Freiburg, Stefan-Meier-Straße 21, D-79104 Freiburg, Germany
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6
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Mondal S, Narayana C. Role of Explicit Solvation in the Simulation of Resonance Raman Spectra within Short-Time Dynamics Approximation. J Phys Chem B 2019; 123:8800-8813. [PMID: 31408344 DOI: 10.1021/acs.jpcb.9b07471] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
In short-time dynamics approximation, relative resonance Raman (RR) intensity of a vibrational mode primarily depends on the magnitude of square of the excited-state gradient along the corresponding normal coordinate, ground-state normal mode eigenvector, and harmonic vibrational wavenumbers. In this study, through simulation of RR spectra of guanosine-5'-monophosphate (GMP) in two ππ* singlet excited states, we analyze how the explicitly hydrogen-bonded local solvation structure of the chromophore dictates intensities of the RR active modes in an unprecedented manner. We show that the accuracy of the structural model of solvated chromophore plays a decisive role in determining an optimal theoretical method for prediction of the Franck-Condon region of the ππ* excited states. 9-Methylguanine (9-meG) in complex with six water molecules (9-meG·6H2O) is found out to be the most accurate one for describing GMP in two different bright electronic states. We find that explicit hydrogen-bonded water molecules strongly influence computed RR intensities of GMP by modulating both the ground-state normal mode vectors and the excited-state energy gradients. We find that simultaneous inclusion of six explicit waters to describe the solute-solvent interaction near all hydration sites is essential for reliable prediction of the features of RR spectra in Lb and Bb electronic states of GMP.
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7
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de Souza B, Farias G, Neese F, Izsák R. Efficient simulation of overtones and combination bands in resonant Raman spectra. J Chem Phys 2019; 150:214102. [DOI: 10.1063/1.5099247] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Bernardo de Souza
- Departmento de Química, Universidade Federal de Santa Catarina, Santa Catarina, Brazil
| | - Giliandro Farias
- Departmento de Química, Universidade Federal de Santa Catarina, Santa Catarina, Brazil
| | - Frank Neese
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
| | - Róbert Izsák
- Max-Planck-Institut für Kohlenforschung, Mülheim an der Ruhr, Germany
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8
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Chen HT, Li TE, Sukharev M, Nitzan A, Subotnik JE. Ehrenfest+R dynamics. II. A semiclassical QED framework for Raman scattering. J Chem Phys 2019; 150:044103. [PMID: 30709300 DOI: 10.1063/1.5057366] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
In Paper I [Chen et al., J. Chem. Phys. 150, 044102 (2019)], we introduced Ehrenfest+R dynamics for a two-level system and showed how spontaneous emission can be heuristically included such that, after averaging over an ensemble of Ehrenfest+R trajectories, one can recover both coherent and incoherent electromagnetic fields. In the present paper, we now show that Ehrenfest+R dynamics can also correctly describe Raman scattering, whose features are completely absent from standard Ehrenfest dynamics. Ehrenfest+R dynamics appear to be quantitatively accurate both for resonant and off-resonant Raman signals, as compared with Kramers-Heisenberg-Dirac theory.
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Affiliation(s)
- Hsing-Ta Chen
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Tao E Li
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Maxim Sukharev
- Department of Physics, Arizona State University, Tempe, Arizona 85287, USA
| | - Abraham Nitzan
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
| | - Joseph E Subotnik
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104, USA
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9
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Baiardi A, Bloino J, Barone V. Time-Dependent Formulation of Resonance Raman Optical Activity Spectroscopy. J Chem Theory Comput 2018; 14:6370-6390. [PMID: 30281300 DOI: 10.1021/acs.jctc.8b00488] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Abstract
In this work, we extend the theoretical framework recently developed for the simulation of resonance Raman (RR) spectra of medium-to-large sized systems to its chiral counterpart, namely, resonance Raman optical activity (RROA). The theory is based on a time-dependent (TD) formulation, with the transition tensors obtained as half-Fourier transforms of the appropriate cross-correlation functions. The implementation has been kept as general as possible, supporting adiabatic and vertical models for the PES representation, both in Cartesian and internal coordinates, with the possible inclusion of Herzberg-Teller (HT) effects. Thanks to the integration of this TD-RROA procedure within a general-purpose quantum-chemistry program, both solvation and leading anharmonicity effects can be included in an effective way. The implementation is validated on one of the smallest chiral molecule (methyloxirane). Practical applications are illustrated with three medium-size organic molecules (naproxen-OCD3, quinidine and 2-Br-hexahelicene), whose simulated spectra are compared to the corresponding experimental data.
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Affiliation(s)
- Alberto Baiardi
- Scuola Normale Superiore , piazza dei Cavalieri 7 , I-56126 Pisa , Italy
| | - Julien Bloino
- Scuola Normale Superiore , piazza dei Cavalieri 7 , I-56126 Pisa , Italy
| | - Vincenzo Barone
- Scuola Normale Superiore , piazza dei Cavalieri 7 , I-56126 Pisa , Italy
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10
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Guthmuller J. The role of Herzberg-Teller effects on the resonance Raman spectrum of trans-porphycene investigated by time dependent density functional theory. J Chem Phys 2018; 148:124107. [PMID: 29604833 DOI: 10.1063/1.5023653] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The S1 excited state properties as well as the associated absorption and resonance Raman (RR) spectra of trans-porphycene are investigated by means of time dependent density functional theory calculations. The relative magnitude of the Franck-Condon (FC) contribution and of the Herzberg-Teller (HT) effects is evaluated for both the absorption and RR intensities. The accuracy of the calculated spectra is assessed by employing different theoretical approximations and by comparing with experimental data. The obtained results show that Duschinsky effects lead to noticeable modifications in the absorption intensities but are nearly negligible in the RR spectrum. By contrast, the HT effects are stronger for the RR intensities compared to the absorption intensities, and these effects significantly improve the agreement with the experimental RR spectrum. Moreover, the HT effects produce different values of the RR depolarization ratios, which can be used to quantify the relative importance of the FC and HT contributions. Generally, it is found that the HT effects have a significant role on the RR spectrum of trans-porphycene and that their inclusion in the computational scheme is mandatory to accurately predict the RR intensities.
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Affiliation(s)
- Julien Guthmuller
- Faculty of Applied Physics and Mathematics, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
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11
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Morzan UN, Alonso de Armiño DJ, Foglia NO, Ramírez F, González Lebrero MC, Scherlis DA, Estrin DA. Spectroscopy in Complex Environments from QM–MM Simulations. Chem Rev 2018; 118:4071-4113. [DOI: 10.1021/acs.chemrev.8b00026] [Citation(s) in RCA: 97] [Impact Index Per Article: 16.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Uriel N. Morzan
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, C1428EHA Buenos Aires, Argentina
| | - Diego J. Alonso de Armiño
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, C1428EHA Buenos Aires, Argentina
| | - Nicolás O. Foglia
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, C1428EHA Buenos Aires, Argentina
| | - Francisco Ramírez
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, C1428EHA Buenos Aires, Argentina
| | - Mariano C. González Lebrero
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, C1428EHA Buenos Aires, Argentina
| | - Damián A. Scherlis
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, C1428EHA Buenos Aires, Argentina
| | - Darío A. Estrin
- Departamento de Química Inorgánica, Analítica y Química Física/INQUIMAE-CONICET, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Ciudad Universitaria, Pab. II, C1428EHA Buenos Aires, Argentina
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12
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Costa GJ, Borin AC, Custodio R, Vidal LN. Fully Anharmonic Vibrational Resonance Raman Spectrum of Diatomic Systems. J Chem Theory Comput 2018; 14:843-855. [DOI: 10.1021/acs.jctc.7b01034] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Gustavo J. Costa
- Departamento Acadêmico de Química e Biologia, Universidade Tecnológica Federal do Paraná, Av. Dep. Heitor de Alencar Furtado, 5000, Curitiba/PR 81280-340, Brazil
| | - Antonio C. Borin
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, NAP-Photo Tech the USP Consortium of Photochemical Technology, Av. Prof. Lineu Prestes, 748, São Paulo/SP 05508-000, Brazil
| | - Rogério Custodio
- Instituto de Química, Universidade Estadual de Campinas, R. Josué de Castro, 126, Campinas/SP 13083-970, Brazil
| | - Luciano N. Vidal
- Departamento Acadêmico de Química e Biologia, Universidade Tecnológica Federal do Paraná, Av. Dep. Heitor de Alencar Furtado, 5000, Curitiba/PR 81280-340, Brazil
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13
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Mondal S, Puranik M. Ultrafast Nuclear Dynamics of Photoexcited Guanosine-5'-Monophosphate in Three Singlet States. J Phys Chem B 2017; 121:7095-7107. [PMID: 28653848 DOI: 10.1021/acs.jpcb.7b05735] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
We report measurement of resonance Raman (RR) spectra of guanosine-5'-monophosphate (GMP), a DNA nucleotide at excitation wavelengths throughout its ππ* absorption band (Bb) in the 210-230 nm range. From these data, we constructed wavelength-dependent Raman intensity excitation profiles (REPs) for all observed modes. These profiles and the absorption spectrum were then modeled using self-consistent simulations based on the time-dependent wave packet propagation formalism. We inferred the initial structural dynamics of GMP immediately after photoexcitation in terms of dimensionless displacements. The simulations also provide linewidth-broadening parameters that in turn report on the time scale of dynamics. We compared deduced structural changes in the purine ring upon photoabsorption into the Bb state with those deduced for the two lowest lying ππ* (La and Lb at 280 and 248 nm, respectively) excited states of GMP. We find that excitation to the Lb state lengthens C6-N1 and C2═N3 bonds, which lie along the formation coordinate of various oxidative adducts but Bb excitation does not. We also find that photoabsorption by the Bb state weakens the C8-N9 bond and thus might assist imidazole ring opening via cleavage of the same bond. Electronic excitation to different ππ* states of the guanine chromophore results in contrasting structural changes; although absorption by the La and Lb states induces expansion of pyrimidine and contraction of imidazole rings, excitation results in overall shrinkage of both the rings. Computed absolute changes in internal coordinates imply that photoexcitation to any of the three singlet states of GMP does not lead directly to the formation of a cation radical of guanine.
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Affiliation(s)
- Sayan Mondal
- Indian Institute of Science Education and Research , Pune 411008, India
| | - Mrinalini Puranik
- Indian Institute of Science Education and Research , Pune 411008, India
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14
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In silico modeling of functionalized graphene oxide-metal cluster conjugates as Raman probe: Raman activity of pyridine. Struct Chem 2017. [DOI: 10.1007/s11224-016-0904-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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15
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Staniszewska M, Kupfer S, Łabuda M, Guthmuller J. Theoretical Assessment of Excited State Gradients and Resonance Raman Intensities for the Azobenzene Molecule. J Chem Theory Comput 2017; 13:1263-1274. [PMID: 28118003 DOI: 10.1021/acs.jctc.6b00966] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The ground state geometries and vibrational frequencies as well as the excitation energies and excited state gradients of the S1(nπ*) and S2(ππ*) states of trans- and cis-azobenzene are investigated by several DFT methods, namely B3LYP, PBE, M06-2X, CAM-B3LYP, and ωB97X. Excited state properties and in particular gradients are also assessed using the wave function based methods EOM-CCSD and RASPT2/RASSCF. Comparison with experimental data shows that the B3LYP functional gives the most accurate results for the ground state geometry and vibrational frequencies. The analysis of the vertical excitation energies reveals that the RASPT2 approach provides the most accurate excitation energies with deviations of the order of 0.1 eV. Among the TDDFT methods, the CAM-B3LYP functional shows the best performance on the excitation energies. By assessing the excited state gradients with respect to the reference RASPT2 data, the most accurate gradients are obtained with B3LYP, whereas other functionals as well as the EOM-CCSD and RASSCF calculations give less consistent results. Overall, despite the tendency of B3LYP to underestimate the excitation energies, this functional provides the most balanced description of both ground and excited state properties for both isomers of azobenzene in the Franck-Condon region.
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Affiliation(s)
- Magdalena Staniszewska
- Faculty of Applied Physics and Mathematics, Gdańsk University of Technology , Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Stephan Kupfer
- Institute of Physical Chemistry, Friedrich Schiller University Jena , Helmholtzweg 4, 07-743 Jena, Germany
| | - Marta Łabuda
- Faculty of Applied Physics and Mathematics, Gdańsk University of Technology , Narutowicza 11/12, 80-233 Gdańsk, Poland
| | - Julien Guthmuller
- Faculty of Applied Physics and Mathematics, Gdańsk University of Technology , Narutowicza 11/12, 80-233 Gdańsk, Poland
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16
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Ma Y, Knecht S, Reiher M. Multiconfigurational Effects in Theoretical Resonance Raman Spectra. Chemphyschem 2017; 18:384-393. [PMID: 27933695 PMCID: PMC5324552 DOI: 10.1002/cphc.201601072] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2016] [Revised: 12/06/2016] [Indexed: 01/26/2023]
Abstract
We analyze resonance Raman spectra of the nucleobase uracil in the short‐time approximation calculated with multiconfigurational methods. We discuss the importance of static electron correlation by means of density‐matrix renormalization group self‐consistent field (DMRG‐SCF) calculations. Our DMRG‐SCF results reveal that a minimal active orbital space that leads to a qualitatively correct description of the resonance Raman spectrum of uracil should encompass parts of the σ/σ* bonding/anti‐bonding orbitals of the pyrimidine ring. We trace these findings back to the considerable entanglement between the σ/σ* bonding/anti‐bonding as well as valence π/π* orbitals in the excited‐state electronic structure of uracil, which indicates non‐negligible non‐dynamical correlation effects that are less pronounced in the electronic ground state.
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Affiliation(s)
- Yingjin Ma
- ETH Zürich, Laboratorium für Physikalische Chemie, Vladimir-Prelog-Weg 2, 8093, Zürich, Switzerland
| | - Stefan Knecht
- ETH Zürich, Laboratorium für Physikalische Chemie, Vladimir-Prelog-Weg 2, 8093, Zürich, Switzerland
| | - Markus Reiher
- ETH Zürich, Laboratorium für Physikalische Chemie, Vladimir-Prelog-Weg 2, 8093, Zürich, Switzerland
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17
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Effects of hydrogen bonding with H2O on the resonance Raman spectra of uracil and thymine. COMPUT THEOR CHEM 2017. [DOI: 10.1016/j.comptc.2016.12.014] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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18
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Santoro F, Jacquemin D. Going beyond the vertical approximation with time-dependent density functional theory. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2016. [DOI: 10.1002/wcms.1260] [Citation(s) in RCA: 121] [Impact Index Per Article: 15.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Fabrizio Santoro
- CNR-Consiglio Nazionale delle Ricerche; Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR); Pisa Italy
| | - Denis Jacquemin
- CEISAM, UMR CNRS 6230; Université de Nantes; Nantes France
- Institut Universitaire de France; Paris France
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19
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Guthmuller J. Comparison of simplified sum-over-state expressions to calculate resonance Raman intensities including Franck-Condon and Herzberg-Teller effects. J Chem Phys 2016; 144:064106. [DOI: 10.1063/1.4941449] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023] Open
Affiliation(s)
- Julien Guthmuller
- Faculty of Applied Physics and Mathematics, Gdańsk University of Technology, Narutowicza 11/12, 80-233 Gdańsk, Poland
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20
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Barton D, König C, Neugebauer J. Vibronic-structure tracking: a shortcut for vibrationally resolved UV/Vis-spectra calculations. J Chem Phys 2015; 141:164115. [PMID: 25362280 DOI: 10.1063/1.4898665] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The vibrational coarse structure and the band shapes of electronic absorption spectra are often dominated by just a few molecular vibrations. By contrast, the simulation of the vibronic structure even in the simplest theoretical models usually requires the calculation of the entire set of normal modes of vibration. Here, we exploit the idea of the mode-tracking protocol [M. Reiher and J. Neugebauer, J. Chem. Phys. 118, 1634 (2003)] in order to directly target and selectively calculate those normal modes which have the largest effect on the vibronic band shape for a certain electronic excitation. This is achieved by defining a criterion for the importance of a normal mode to the vibrational progressions in the absorption band within the so-called "independent mode, displaced harmonic oscillator" (IMDHO) model. We use this approach for a vibronic-structure investigation for several small test molecules as well as for a comparison of the vibronic absorption spectra of a truncated chlorophyll a model and the full chlorophyll a molecule. We show that the method allows to go beyond the often-used strategy to simulate absorption spectra based on broadened vertical excitation peaks with just a minimum of computational effort, which in case of chlorophyll a corresponds to about 10% of the cost for a full simulation within the IMDHO approach.
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Affiliation(s)
- Dennis Barton
- Theoretische Organische Chemie, Organisch-Chemisches Institut and Center for Multiscale Theory and Computation, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149 Münster, Germany
| | - Carolin König
- Theoretische Organische Chemie, Organisch-Chemisches Institut and Center for Multiscale Theory and Computation, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149 Münster, Germany
| | - Johannes Neugebauer
- Theoretische Organische Chemie, Organisch-Chemisches Institut and Center for Multiscale Theory and Computation, Westfälische Wilhelms-Universität Münster, Corrensstraße 40, 48149 Münster, Germany
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21
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Baiardi A, Bloino J, Barone V. Accurate Simulation of Resonance-Raman Spectra of Flexible Molecules: An Internal Coordinates Approach. J Chem Theory Comput 2015; 11:3267-80. [DOI: 10.1021/acs.jctc.5b00241] [Citation(s) in RCA: 45] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Alberto Baiardi
- Scuola Normale Superiore, Piazza
dei Cavalieri 7, I-56126 Pisa, Italy
| | - Julien Bloino
- Scuola Normale Superiore, Piazza
dei Cavalieri 7, I-56126 Pisa, Italy
- Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti OrganoMetallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca CNR, Via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza
dei Cavalieri 7, I-56126 Pisa, Italy
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22
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Preiß J, Jäger M, Rau S, Dietzek B, Popp J, Martínez T, Presselt M. How Does Peripheral Functionalization of Ruthenium(II)-Terpyridine Complexes Affect Spatial Charge Redistribution after Photoexcitation at the Franck-Condon Point? Chemphyschem 2015; 16:1395-404. [DOI: 10.1002/cphc.201500223] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2015] [Indexed: 02/06/2023]
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23
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Affiliation(s)
- Shuai Sun
- Department
of Chemistry, University of Alberta, 11227 Saskatchewan Drive NW, Edmonton, AB T6G
2G2, Canada
| | - Alex Brown
- Department
of Chemistry, University of Alberta, 11227 Saskatchewan Drive NW, Edmonton, AB T6G
2G2, Canada
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24
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Egidi F, Bloino J, Cappelli C, Barone V. A robust and effective time-independent route to the calculation of Resonance Raman spectra of large molecules in condensed phases with the inclusion of Duschinsky, Herzberg-Teller, anharmonic, and environmental effects. J Chem Theory Comput 2013; 10:346-363. [PMID: 26550003 DOI: 10.1021/ct400932e] [Citation(s) in RCA: 62] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Abstract
We present an effective time-independent implementation to model vibrational resonance Raman (RR) spectra of medium-large molecular systems with the inclusion of Franck-Condon (FC) and Herzberg-Teller (HT) effects and a full account of the possible differences between the harmonic potential energy surfaces of the ground and resonant electronic states. Thanks to a number of algorithmic improvements and very effective parallelization, the full computations of fundamentals, overtones, and combination bands can be routinely performed for large systems possibly involving more than two electronic states. In order to improve the accuracy of the results, an effective inclusion of the leading anharmonic effects is also possible, together with environmental contributions under different solvation regimes. Reduced-dimensionality approaches can further enlarge the range of applications of this new tool. Applications to imidazole, pyrene, and chlorophyll a1 in solution are reported, as well as comparisons with available experimental data.
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Affiliation(s)
- Franco Egidi
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
| | - Julien Bloino
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy ; Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organometallici, UOS di Pisa, Via G. Moruzzi 1, 56124 Pisa, Italy
| | - Chiara Cappelli
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, via Risorgimento 35, 56126 Pisa, Italy
| | - Vincenzo Barone
- Scuola Normale Superiore, Piazza dei Cavalieri 7, 56126 Pisa, Italy
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25
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Silverstein DW, Govind N, van Dam HJJ, Jensen L. Simulating One-Photon Absorption and Resonance Raman Scattering Spectra Using Analytical Excited State Energy Gradients within Time-Dependent Density Functional Theory. J Chem Theory Comput 2013; 9:5490-503. [DOI: 10.1021/ct4007772] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel W. Silverstein
- Department
of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802, United States
| | - Niranjan Govind
- William
R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, Washington 99352, United States
| | - Hubertus J. J. van Dam
- William
R. Wiley Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, 902 Battelle Boulevard, Richland, Washington 99352, United States
| | - Lasse Jensen
- Department
of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802, United States
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26
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Avila Ferrer FJ, Barone V, Cappelli C, Santoro F. Duschinsky, Herzberg–Teller, and Multiple Electronic Resonance Interferential Effects in Resonance Raman Spectra and Excitation Profiles. The Case of Pyrene. J Chem Theory Comput 2013; 9:3597-611. [DOI: 10.1021/ct400197y] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Francisco J. Avila Ferrer
- Consiglio Nazionale delle Ricerche
− CNR, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca, Via G. Moruzzi 1,
I-56124 Pisa, Italy
- Physical Chemistry, Faculty
of Science, University of Málaga, Málaga 29071, Spain
| | - Vincenzo Barone
- Scuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, I-56126 Pisa,
Italy
| | - Chiara Cappelli
- Scuola Normale Superiore di Pisa, Piazza dei Cavalieri 7, I-56126 Pisa,
Italy
- Dipartimento di Chimica
e Chimica
Industriale dell’Università di Pisa, Via Risorgimento 35, I-56126 Pisa, Italy
| | - Fabrizio Santoro
- Consiglio Nazionale delle Ricerche
− CNR, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca, Via G. Moruzzi 1,
I-56124 Pisa, Italy
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27
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Lin N, Barone V, Cappelli C, Zhao X, Ruud K, Santoro F. Effective time-independent studies on resonance Raman spectroscopy of trans-stilbene including the Duschinsky effect. Mol Phys 2013. [DOI: 10.1080/00268976.2013.809490] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Na Lin
- a State Key Laboratory of Crystal Materials , Shandong University , Shandong , China
- b Centre for Theoretical and Computational Chemistry, Department of Chemistry , University of Tromsø , Tromsø , Norway
| | - Vincenzo Barone
- c Scuola Normale Superiore, Piazza dei Cavalieri 7 , Pisa , Italy
| | - Chiara Cappelli
- c Scuola Normale Superiore, Piazza dei Cavalieri 7 , Pisa , Italy
- d Dipartimento di Chimica e Chimica Industriale , Università di Pisa , Pisa , Italy
| | - Xian Zhao
- a State Key Laboratory of Crystal Materials , Shandong University , Shandong , China
| | - Kenneth Ruud
- b Centre for Theoretical and Computational Chemistry, Department of Chemistry , University of Tromsø , Tromsø , Norway
| | - Fabrizio Santoro
- e Consiglio Nazionale delle Ricerche – CNR, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR) , Pisa , Italy
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28
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Petrenko T, Neese F. Efficient and automatic calculation of optical band shapes and resonance Raman spectra for larger molecules within the independent mode displaced harmonic oscillator model. J Chem Phys 2012; 137:234107. [DOI: 10.1063/1.4771959] [Citation(s) in RCA: 92] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
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29
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Huh J, Berger R. Coherent state-based generating function approach for Franck–Condon transitions and beyond. ACTA ACUST UNITED AC 2012. [DOI: 10.1088/1742-6596/380/1/012019] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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30
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Wächtler M, Guthmuller J, González L, Dietzek B. Analysis and characterization of coordination compounds by resonance Raman spectroscopy. Coord Chem Rev 2012. [DOI: 10.1016/j.ccr.2012.02.004] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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31
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Al-Saidi WA, Asher SA, Norman P. Resonance Raman Spectra of TNT and RDX Using Vibronic Theory, Excited-State Gradient, and Complex Polarizability Approximations. J Phys Chem A 2012; 116:7862-72. [DOI: 10.1021/jp303920c] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- W. A. Al-Saidi
- Department of Chemical and Petroleum
Engineering, University of Pittsburgh,
Pittsburgh, Pennsylvania 15261, United States
| | - Sanford A. Asher
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania
15260, United States
| | - Patrick Norman
- Department
of Physics, Chemistry
and Biology, Linköping University, SE-581 83 Linköping, Sweden
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32
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Weymuth T, Haag MP, Kiewisch K, Luber S, Schenk S, Jacob CR, Herrmann C, Neugebauer J, Reiher M. MOVIPAC: Vibrational spectroscopy with a robust meta-program for massively parallel standard and inverse calculations. J Comput Chem 2012; 33:2186-98. [DOI: 10.1002/jcc.23036] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2012] [Revised: 05/16/2012] [Accepted: 05/19/2012] [Indexed: 11/08/2022]
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33
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Silverstein DW, Jensen L. Vibronic coupling simulations for linear and nonlinear optical processes: Theory. J Chem Phys 2012; 136:064111. [DOI: 10.1063/1.3684236] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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34
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Boereboom JM, van Hemert MC, Neugebauer J. The Resonance Raman Spectra of Spheroidene Revisited with a First-Principles Approach. Chemphyschem 2011; 12:3157-69. [DOI: 10.1002/cphc.201100545] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2011] [Indexed: 11/07/2022]
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35
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Rappoport D, Shim S, Aspuru-Guzik A. Simplified Sum-Over-States Approach for Predicting Resonance Raman Spectra. Application to Nucleic Acid Bases. J Phys Chem Lett 2011; 2:1254-1260. [PMID: 26295418 DOI: 10.1021/jz200413g] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Resonance Raman spectra provide a valuable probe into molecular excited-state structures and properties. Moreover, resonance enhancement is of importance for the chemical contribution to surface-enhanced Raman scattering. In this work, we introduce a simplified sum-over-states scheme for computing Raman spectra and Raman excitation profiles. The proposed sum-over-states approach uses derivatives of electronic excitation energies and transition dipole moments, which can be efficiently computed from time-dependent density functional theory. We analyze and interpret the resonance Raman spectra and Raman excitation profiles of nucleic acid bases using the present approach. Contributions of individual excited states under strictly resonant and nonresonant conditions are investigated, and smooth interpolation between both limiting cases is obtained.
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Affiliation(s)
- Dmitrij Rappoport
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge Massachusetts 02138, United States
| | - Sangwoo Shim
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge Massachusetts 02138, United States
| | - Alán Aspuru-Guzik
- Department of Chemistry and Chemical Biology, Harvard University, 12 Oxford Street, Cambridge Massachusetts 02138, United States
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36
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Santoro F, Cappelli C, Barone V. Effective Time-Independent Calculations of Vibrational Resonance Raman Spectra of Isolated and Solvated Molecules Including Duschinsky and Herzberg–Teller Effects. J Chem Theory Comput 2011; 7:1824-39. [DOI: 10.1021/ct200054w] [Citation(s) in RCA: 71] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Fabrizio Santoro
- CNR−Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
| | - Chiara Cappelli
- CNR−Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
- Dipartimento di Chimica e Chimica Industriale, Università di Pisa, via Risorgimento, 35 I-56126 Pisa, Italy
| | - Vincenzo Barone
- CNR−Consiglio Nazionale delle Ricerche, Istituto di Chimica dei Composti Organo Metallici (ICCOM-CNR), UOS di Pisa, Area della Ricerca, via G. Moruzzi 1, I-56124 Pisa, Italy
- Scuola Normale Superiore, Piazza dei Cavalieri, 7 I-56126 Pisa, Italy
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37
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Silverstein DW, Jensen L. Understanding the Resonance Raman Scattering of Donor−Acceptor Complexes using Long-Range Corrected DFT. J Chem Theory Comput 2010; 6:2845-55. [DOI: 10.1021/ct1002779] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Daniel W. Silverstein
- Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Lasse Jensen
- Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
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38
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Luber S, Reiher M. Prediction of Raman Optical Activity Spectra of Chiral 3-Acetylcamphorato-Cobalt Complexes. Chemphyschem 2010; 11:1876-87. [DOI: 10.1002/cphc.201000121] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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39
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Majumdar D, Roszak S, Leszczynski J. Density Functional Theory Based Studies on the Nature of Raman and Resonance Raman Scattering of Nerve Agent Bound to Gold and Oxide-Supported Gold Clusters: A Plausible Way of Detection. J Phys Chem A 2010; 114:4340-53. [DOI: 10.1021/jp910472c] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Affiliation(s)
- D. Majumdar
- Interdisciplinary Center for Nanotoxicity, Department of Chemistry, Jackson State University, Jackson, Mississippi 39217 and Institute of Physical and Theoretical Chemistry, Wroclaw University of Technology, Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland
| | - Szczepan Roszak
- Interdisciplinary Center for Nanotoxicity, Department of Chemistry, Jackson State University, Jackson, Mississippi 39217 and Institute of Physical and Theoretical Chemistry, Wroclaw University of Technology, Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland
| | - Jerzy Leszczynski
- Interdisciplinary Center for Nanotoxicity, Department of Chemistry, Jackson State University, Jackson, Mississippi 39217 and Institute of Physical and Theoretical Chemistry, Wroclaw University of Technology, Wybrzeze Wyspianskiego 27, 50-370 Wroclaw, Poland
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40
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Luber S, Neugebauer J, Reiher M. Enhancement and de-enhancement effects in vibrational resonance Raman optical activity. J Chem Phys 2010; 132:044113. [DOI: 10.1063/1.3300069] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
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41
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Schmierer T, Laimgruber S, Haiser K, Kiewisch K, Neugebauer J, Gilch P. Femtosecond spectroscopy on the photochemistry of ortho-nitrotoluene. Phys Chem Chem Phys 2010; 12:15653-64. [DOI: 10.1039/c004025h] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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42
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Guthmuller J, González L. Simulation of the resonance Raman intensities of a ruthenium–palladium photocatalyst by time dependent density functional theory. Phys Chem Chem Phys 2010; 12:14812-21. [DOI: 10.1039/c0cp00942c] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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43
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Guthmuller J, Champagne B, Moucheron C, Kirsch - De Mesmaeker A. Investigation of the Resonance Raman Spectra and Excitation Profiles of a Monometallic Ruthenium(II) [Ru(bpy)2(HAT)]2+ Complex by Time-Dependent Density Functional Theory. J Phys Chem B 2009; 114:511-20. [DOI: 10.1021/jp908154q] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Julien Guthmuller
- Laboratoire de Chimie Théorique, Facultés Universitaires Notre-Dame de la Paix (FUNDP), Rue de Bruxelles 61, B-5000 Namur, Belgium, and Service de Chimie Organique et Photochimie, Université Libre de Bruxelles, Avenue F. D. Roosevelt 50, CP 160/08, B-1050 Bruxelles, Belgium
| | - Benoît Champagne
- Laboratoire de Chimie Théorique, Facultés Universitaires Notre-Dame de la Paix (FUNDP), Rue de Bruxelles 61, B-5000 Namur, Belgium, and Service de Chimie Organique et Photochimie, Université Libre de Bruxelles, Avenue F. D. Roosevelt 50, CP 160/08, B-1050 Bruxelles, Belgium
| | - Cécile Moucheron
- Laboratoire de Chimie Théorique, Facultés Universitaires Notre-Dame de la Paix (FUNDP), Rue de Bruxelles 61, B-5000 Namur, Belgium, and Service de Chimie Organique et Photochimie, Université Libre de Bruxelles, Avenue F. D. Roosevelt 50, CP 160/08, B-1050 Bruxelles, Belgium
| | - Andrée Kirsch - De Mesmaeker
- Laboratoire de Chimie Théorique, Facultés Universitaires Notre-Dame de la Paix (FUNDP), Rue de Bruxelles 61, B-5000 Namur, Belgium, and Service de Chimie Organique et Photochimie, Université Libre de Bruxelles, Avenue F. D. Roosevelt 50, CP 160/08, B-1050 Bruxelles, Belgium
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44
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Andruniów T, Olivucci M. How Does the Relocation of Internal Water Affect Resonance Raman Spectra of Rhodopsin? An Insight from CASSCF/Amber Calculations. J Chem Theory Comput 2009; 5:3096-104. [DOI: 10.1021/ct900071c] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tadeusz Andruniów
- Quantum Chemistry and Molecular Modelling Lab, Institute of Physical and Theoretical Chemistry, Wroclaw University of Technology, Wyb. Wyspianskiego 27, 50-370 Wroclaw, Poland, Dipartimento di Chimica, Università di Siena, via Aldo Moro 2, 53100 Siena, Italy, and Chemistry Department, Bowling Green State University, Bowling Green, Ohio 43403
| | - Massimo Olivucci
- Quantum Chemistry and Molecular Modelling Lab, Institute of Physical and Theoretical Chemistry, Wroclaw University of Technology, Wyb. Wyspianskiego 27, 50-370 Wroclaw, Poland, Dipartimento di Chimica, Università di Siena, via Aldo Moro 2, 53100 Siena, Italy, and Chemistry Department, Bowling Green State University, Bowling Green, Ohio 43403
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45
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Witlicki EH, Hansen SW, Christensen M, Hansen TS, Nygaard SD, Jeppesen JO, Wong EW, Jensen L, Flood AH. Determination of Binding Strengths of a Host−Guest Complex Using Resonance Raman Scattering. J Phys Chem A 2009; 113:9450-7. [DOI: 10.1021/jp905202x] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Affiliation(s)
- Edward H. Witlicki
- Chemistry Department, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, Department of Physics and Chemistry, University of Southern Denmark, Odense University, Campusvej 55, 5230 Odense M, Denmark, Atomate Corporation, 2665-D Park Center Drive, Simi Valley, California 93065, and Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Stinne W. Hansen
- Chemistry Department, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, Department of Physics and Chemistry, University of Southern Denmark, Odense University, Campusvej 55, 5230 Odense M, Denmark, Atomate Corporation, 2665-D Park Center Drive, Simi Valley, California 93065, and Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Martin Christensen
- Chemistry Department, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, Department of Physics and Chemistry, University of Southern Denmark, Odense University, Campusvej 55, 5230 Odense M, Denmark, Atomate Corporation, 2665-D Park Center Drive, Simi Valley, California 93065, and Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Thomas S. Hansen
- Chemistry Department, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, Department of Physics and Chemistry, University of Southern Denmark, Odense University, Campusvej 55, 5230 Odense M, Denmark, Atomate Corporation, 2665-D Park Center Drive, Simi Valley, California 93065, and Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Sune D. Nygaard
- Chemistry Department, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, Department of Physics and Chemistry, University of Southern Denmark, Odense University, Campusvej 55, 5230 Odense M, Denmark, Atomate Corporation, 2665-D Park Center Drive, Simi Valley, California 93065, and Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Jan O. Jeppesen
- Chemistry Department, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, Department of Physics and Chemistry, University of Southern Denmark, Odense University, Campusvej 55, 5230 Odense M, Denmark, Atomate Corporation, 2665-D Park Center Drive, Simi Valley, California 93065, and Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Eric W. Wong
- Chemistry Department, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, Department of Physics and Chemistry, University of Southern Denmark, Odense University, Campusvej 55, 5230 Odense M, Denmark, Atomate Corporation, 2665-D Park Center Drive, Simi Valley, California 93065, and Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Lasse Jensen
- Chemistry Department, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, Department of Physics and Chemistry, University of Southern Denmark, Odense University, Campusvej 55, 5230 Odense M, Denmark, Atomate Corporation, 2665-D Park Center Drive, Simi Valley, California 93065, and Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
| | - Amar H. Flood
- Chemistry Department, Indiana University, 800 East Kirkwood Avenue, Bloomington, Indiana 47405, Department of Physics and Chemistry, University of Southern Denmark, Odense University, Campusvej 55, 5230 Odense M, Denmark, Atomate Corporation, 2665-D Park Center Drive, Simi Valley, California 93065, and Department of Chemistry, The Pennsylvania State University, 104 Chemistry Building, University Park, Pennsylvania 16802
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46
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Kiewisch K, Neugebauer J, Reiher M. Selective calculation of high-intensity vibrations in molecular resonance Raman spectra. J Chem Phys 2009; 129:204103. [PMID: 19045848 DOI: 10.1063/1.3013351] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We present an intensity-driven approach for the selective calculation of vibrational modes in molecular resonance Raman spectra. The method exploits the ideas of the mode-tracking algorithm [M. Reiher and J. Neugebauer, J. Chem. Phys. 118, 1634 (2003)] for the calculation of preselected molecular vibrations and of Heller's gradient approximation [Heller et al., J. Phys. Chem. 86, 1822 (1982)] for the estimation of resonance Raman intensities. The gradient approximation allows us to construct a basis vector for the subspace iteration carried out in the mode-tracking calculation, which corresponds to an artificial collective motion of the molecule that contains the entire intensity in the resonance Raman spectrum. Subsequently, the algorithm generates new basis vectors from which normal mode approximations are obtained. It is then possible to provide estimates for (i) the accuracy of the normal mode approximations and (ii) the intensity of these modes in the final resonance Raman spectrum. This approach is tested for the examples of uracil and a structural motif from the E colicin binding immunity protein Im7, in which a few aromatic amino acids dominate the resonance Raman spectrum at wavelengths larger than 240 nm.
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Affiliation(s)
- Karin Kiewisch
- Laboratorium fur Physikalische Chemie, ETH Zurich, Zurich, Switzerland
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Mohammed A, Ågren H, Norman P. Resonance enhanced Raman scattering from the complex electric-dipole polarizability: A theoretical study on N2. Chem Phys Lett 2009. [DOI: 10.1016/j.cplett.2008.11.063] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Myers Kelley A. Resonance Raman and Resonance Hyper-Raman Intensities: Structure and Dynamics of Molecular Excited States in Solution. J Phys Chem A 2008; 112:11975-91. [DOI: 10.1021/jp805530y] [Citation(s) in RCA: 79] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Anne Myers Kelley
- School of Natural Sciences, University of California, Merced, P.O. Box 2039, Merced, California 95344
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Guthmuller J, Champagne B. Resonance Raman Scattering of Rhodamine 6G as Calculated by Time-Dependent Density Functional Theory: Vibronic and Solvent Effects. J Phys Chem A 2008; 112:3215-23. [DOI: 10.1021/jp7112279] [Citation(s) in RCA: 76] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Julien Guthmuller
- Laboratoire de Chimie Théorique Appliquée, Facultés Universitaires Notre-Dame de la Paix, Rue de Bruxelles 61, B-5000 Namur, Belgium
| | - Benoît Champagne
- Laboratoire de Chimie Théorique Appliquée, Facultés Universitaires Notre-Dame de la Paix, Rue de Bruxelles 61, B-5000 Namur, Belgium
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Petrenko T, Neese F. Analysis and prediction of absorption band shapes, fluorescence band shapes, resonance Raman intensities, and excitation profiles using the time-dependent theory of electronic spectroscopy. J Chem Phys 2008; 127:164319. [PMID: 17979350 DOI: 10.1063/1.2770706] [Citation(s) in RCA: 211] [Impact Index Per Article: 13.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
A general method for the simulation of absorption (ABS) and fluorescence band shapes, resonance-Raman (rR) spectra, and excitation profiles based on the time-dependent theory of Heller is discussed. The following improvements to Heller's theory have been made: (a) derivation of new recurrence relations for the time-dependent wave packet overlap in the case of frequency changes between the ground and electronically excited states, (b) a new series expansion that gives insight into the nature of Savin's preresonance approximation, (c) incorporation of inhomogeneous broadening effects into the formalism at no additional computational cost, and (d) derivation of a new and simple short-time dynamics based equation for the Stokes shift that remains valid in the case of partially resolved vibrational structure. Our implementation of the time-dependent theory for the fitting of experimental spectra and the simulation of model spectra as well as the quantum mechanical calculation of the model parameters is discussed. The implementation covers all electronic structure approaches which are able to deliver ground- and excited-state energies and transition dipole moments. The technique becomes highly efficient if analytic gradients for the excited-state surface are available. In this case, the computational cost for the simultaneous prediction of ABS, fluorescence, and rR spectra is equal to that of a single excited-state geometry optimization step while the limitations of the short-time dynamics approximation are completely avoided. As a test case we discuss the well-known case of the strongly allowed 1 (1)A(g) --> 1 (1)B(u) transition in 1,3,5 trans-hexatriene in detail using method ranging from simple single-reference treatments to elaborate multireference electronic structure approaches. At the highest computational level, the computed spectra show the best agreement that has so far been obtained with quantum chemical methods for this problem.
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Affiliation(s)
- Taras Petrenko
- Lehrstuhl für Theoretische Chemie, Universität Bonn, Wegelerstrasse 12, 53115 Bonn, Germany
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