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Li J, Wijeratne SS, Qiu X, Kiang CH. DNA under Force: Mechanics, Electrostatics, and Hydration. NANOMATERIALS (BASEL, SWITZERLAND) 2015; 5:246-267. [PMID: 28347009 PMCID: PMC5312857 DOI: 10.3390/nano5010246] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2014] [Revised: 01/16/2015] [Accepted: 02/12/2015] [Indexed: 11/16/2022]
Abstract
Quantifying the basic intra- and inter-molecular forces of DNA has helped us to better understand and further predict the behavior of DNA. Single molecule technique elucidates the mechanics of DNA under applied external forces, sometimes under extreme forces. On the other hand, ensemble studies of DNA molecular force allow us to extend our understanding of DNA molecules under other forces such as electrostatic and hydration forces. Using a variety of techniques, we can have a comprehensive understanding of DNA molecular forces, which is crucial in unraveling the complex DNA functions in living cells as well as in designing a system that utilizes the unique properties of DNA in nanotechnology.
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Affiliation(s)
- Jingqiang Li
- Department of Physics and Astronomy, Rice University, Houston, TX 77005, USA.
| | - Sithara S Wijeratne
- Department of Physics and Astronomy, Rice University, Houston, TX 77005, USA.
| | - Xiangyun Qiu
- Department of Physics, George Washington University, Washington, DC 20052, USA.
| | - Ching-Hwa Kiang
- Department of Physics and Astronomy, Rice University, Houston, TX 77005, USA.
- Department of Bioengineering, Rice University, Houston, TX 77005, USA.
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Denton AR. Poisson-Boltzmann theory of charged colloids: limits of the cell model for salty suspensions. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2010; 22:364108. [PMID: 21386524 DOI: 10.1088/0953-8984/22/36/364108] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
Thermodynamic properties of charge-stabilized colloidal suspensions and polyelectrolyte solutions are commonly modelled by implementing the mean-field Poisson-Boltzmann (PB) theory within a cell model. This approach models a bulk system by a single macroion, together with counterions and salt ions, confined to a symmetrically shaped, electroneutral cell. While easing numerical solution of the nonlinear PB equation, the cell model neglects microion-induced interactions and correlations between macroions, precluding modelling of macroion ordering phenomena. An alternative approach, which avoids the artificial constraints of cell geometry, exploits the mapping of a macroion-microion mixture onto a one-component model of pseudo-macroions governed by effective interparticle interactions. In practice, effective-interaction models are usually based on linear-screening approximations, which can accurately describe strong nonlinear screening only by incorporating an effective (renormalized) macroion charge. Combining charge renormalization and linearized PB theories, in both the cell model and an effective-interaction (cell-free) model, we compute osmotic pressures of highly charged colloids and monovalent microions, in Donnan equilibrium with a salt reservoir, over a range of concentrations. By comparing predictions with primitive model simulation data for salt-free suspensions, and with predictions from nonlinear PB theory for salty suspensions, we chart the limits of both the cell model and linear-screening approximations in modelling bulk thermodynamic properties. Up to moderately strong electrostatic couplings, the cell model proves accurate for predicting osmotic pressures of deionized (counterion-dominated) suspensions. With increasing salt concentration, however, the relative contribution of macroion interactions to the osmotic pressure grows, leading predictions from the cell and effective-interaction models to deviate. No evidence is found for a liquid-vapour phase instability driven by monovalent microions. These results may guide applications of PB theory to colloidal suspensions and other soft materials.
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Affiliation(s)
- A R Denton
- Department of Physics, North Dakota State University, Fargo, ND 58108-6050, USA.
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Wang TY, Sheng YJ, Tsao HK. Donnan potential of dilute colloidal dispersions: Monte Carlo simulations. J Colloid Interface Sci 2009; 340:192-201. [DOI: 10.1016/j.jcis.2009.07.070] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2009] [Revised: 07/29/2009] [Accepted: 07/31/2009] [Indexed: 11/27/2022]
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Gapinski J, Patkowski A, Banchio AJ, Buitenhuis J, Holmqvist P, Lettinga MP, Meier G, Nägele G. Structure and short-time dynamics in suspensions of charged silica spheres in the entire fluid regime. J Chem Phys 2009; 130:084503. [DOI: 10.1063/1.3078408] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Wang TY, Li HT, Sheng YJ, Tsao HK. Equilibrium sedimentation profile of dilute, salt-free charged colloids. J Chem Phys 2008; 129:204504. [DOI: 10.1063/1.3026601] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Reščič J, Linse P. Potential of mean force between charged colloids: Effect of dielectric discontinuities. J Chem Phys 2008; 129:114505. [DOI: 10.1063/1.2971038] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Camargo M, Téllez G. Renormalized charge in a two-dimensional model of colloidal suspension from hypernetted chain approach. J Chem Phys 2008; 128:134907. [DOI: 10.1063/1.2844598] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Banchio AJ, Nägele G. Short-time transport properties in dense suspensions: From neutral to charge-stabilized colloidal spheres. J Chem Phys 2008; 128:104903. [DOI: 10.1063/1.2868773] [Citation(s) in RCA: 143] [Impact Index Per Article: 8.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Wang TY, Sheng YJ, Tsao HK. Effects of multivalent salt addition on effective charge of dilute colloidal solutions. J Chem Phys 2006; 125:194523. [PMID: 17129139 DOI: 10.1063/1.2390707] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The effective charge Z* is often invoked to account for the accumulation of counterions near the colloid with intrinsic charge Z. Although the ion concentrations c(i) are not uniform in the solution due to the presence of the charged particle, their chemical potentials are uniform everywhere. Thus, on the basis of ion chemical potential, effective ion concentrations c(i)*, which can be experimentally measured by potentiometry, are defined with the pure salt solution as the reference state. The effective charge associated with the charged particle can then be determined by the global electroneutrality condition. Monte Carlo simulations are performed in a spherical Wigner-Seitz cell to obtain the effective charge of the colloid. In terms of the charge ratio alpha=Z*/Z, the effects of added salt concentration, counterion valency, and particle charge are examined. The effective charge declines with increasing salt concentration and the multivalent salt is much more efficient in reducing the effective charge of the colloidal solution. Moreover, the extent of effective charge reduction is decreased with increasing intrinsic charge for a given concentration of added salt. Those results are qualitatively consistent with experimental observations by electrophoresis.
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Affiliation(s)
- Tzu-Yu Wang
- Department of Chemical and Materials Engineering, National Central University, Jhongli 320, Taiwan, Republic of China
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Wang TY, Lee TR, Sheng YJ, Tsao HK. Effective Charges of Polyelectrolytes in a Salt-Free Solution Based on Counterion Chemical Potential. J Phys Chem B 2005; 109:22560-9. [PMID: 16853938 DOI: 10.1021/jp054194m] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The phenomenon of counterion condensation around a flexible polyelectrolyte chain with N monomers is investigated by Monte Carlo simulations in terms of the degree of ionization alpha, which is proportional to the effective charge. It is operationally defined as the ratio of observed to intrinsic counterion concentration, alpha = co/ci. The observed counterion concentration in the dilute polyelectrolyte solution is equivalent to an electrolyte solution of concentration co with the same counterion chemical potential. It can be determined directly by thermodynamic experiments such as ion-selective electrode. With the polyelectrolyte fixed at the center of the spherical Wigner-Seitz cell, the polymer conformation, counterion distribution, and chemical potential can be obtained. Our simulation shows that the degree of ionization rises as the polymer concentration decreases. This behavior is opposite to that calculated from the infinitely long charged rod model, which is often used to study counterion condensation. Moreover, we find that, for a specified line charge density, alpha decreases with an increment in chain length and chain flexibility. In fact, the degree of ionization is found to decline with increasing polymer fractal dimension, which can be tuned by varying bending modulus and solvent quality. Those results can be qualitatively explained by a simple model of two-phase approximation.
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Affiliation(s)
- Tzu-Yu Wang
- Department of Chemical and Materials Engineering, National Central University, Jhongli, Taiwan 320, ROC
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Sennato S, Bordi F, Cametti C, Diociaiuti M, Malaspina P. Charge patch attraction and reentrant condensation in DNA–liposome complexes. BIOCHIMICA ET BIOPHYSICA ACTA-BIOMEMBRANES 2005; 1714:11-24. [PMID: 16005847 DOI: 10.1016/j.bbamem.2005.06.004] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/28/2004] [Revised: 04/26/2005] [Accepted: 06/07/2005] [Indexed: 10/25/2022]
Abstract
We investigated the formation of complexes between cationic liposomes built up by DOTAP and three linear anionic polyions, with different charge density and flexibility, such as a single-stranded ssDNA, a double-stranded dsDNA and the polyacrylate sodium salt [NaPAA] of three different molecular weights. Our aim is to gain further insight into the formation mechanism of polyion-liposome aggregates of different sizes (lipoplexes), by comparing the behavior of DNA with a model polyelectrolyte, such as NaPAA, with approximately the same charge density but with a higher flexibility. We employed dynamic light scattering (DLS) and transmission electron microscopy (TEM) measurements, in order to explore both the hydrodynamic and structural properties of the aggregates resulting from polyion-liposome interaction and to present a comprehensive picture of the complexation process. The phenomenology can be summarized in a charge ratio-dependent scenario, where the main feature is the formation of large equilibrium clusters due to the aggregation of intact polyion-coated vesicles. At increasing polyion-liposome ratio, the size of the clusters continuously increases, reaching a maximum at a well-defined value of this ratio, and then decreases ("reentrant" condensation). The aggregation mechanism and the role of the polyion charge density in the complex formation are discussed in the light of the recent theories on the correlated adsorption of polyelectrolytes at charged interfaces. Within this framework, the phenomena of charge inversion and the reentrant condensation, peaked at the isoelectric point, finds a simple explanation.
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Affiliation(s)
- S Sennato
- Dipartimento di Fisica, Universita' di Roma La Sapienza, Piazzale A. Moro 5, I-00185-Rome, Italy
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Hsiao CC, Wang TY, Tsao HK. Counterion condensation and release in micellar solutions. J Chem Phys 2005; 122:144702. [PMID: 15847548 DOI: 10.1063/1.1873672] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Counterion condensation and release in micellar solutions are investigated by direct measurement of counterion concentration with ion-selective electrode. Monte Carlo simulations based on the cell model are also performed to analyze the experimental results. The degree of counterion condensation is indicated by the concentration ratio of counterions in the bulk to the total ionic surfactant added, alpha< or =1. The ionic surfactant is completely dissociated below the critical micelle concentration (cmc). However, as cmc is exceeded, the free counterion ratio alpha declines with increasing the surfactant concentration and approaches an asymptotic value owing to counterion condensation to the surface of the highly charged micelles. Micelle formation leads to much stronger electrostatic attraction between the counterion and the highly charged sphere in comparison to the attraction of single surfactant ion with its counterion. A simple model is developed to obtain the true degree of ionization, which agrees with our Monte Carlo results. Upon addition of neutral polymer or monovalent salts, some of the surfactant counterions are released to the bulk. The former is due to the decrease of the intrinsic charge (smaller aggregation number) and the degree of ionization is increased. The latter is attributed to competitive counterion condensation, which follows the Hefmeister series. This consequence indicates that the specific ion effect plays an important role next to the electrostatic attraction.
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Affiliation(s)
- Chin Chieh Hsiao
- Department of Chemical and Materials Engineering, National Central University, Jhongli City, Taiwan 320, Republic of China
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