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Quoika PK, Zacharias M. Liquid-Vapor Coexistence and Spontaneous Evaporation at Atmospheric Pressure of Common Rigid Three-Point Water Models in Molecular Simulations. J Phys Chem B 2024; 128:2457-2468. [PMID: 38427971 PMCID: PMC10945489 DOI: 10.1021/acs.jpcb.3c08183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Revised: 02/21/2024] [Accepted: 02/22/2024] [Indexed: 03/03/2024]
Abstract
Molecular dynamics (MD) simulations are widely used to investigate molecular systems at atomic resolution including biomolecular structures, drug-receptor interactions, and novel materials. Frequently, MD simulations are performed in an aqueous solution with explicit models of water molecules. Commonly, such models are parameterized to reproduce the liquid phase of water under ambient conditions. However, often, simulations at significantly higher temperatures are also of interest. Hence, it is important to investigate the equilibrium of the liquid and vapor phases of molecular models of water at elevated temperatures. Here, we evaluate the behavior of 11 common rigid three-point water models over a wide range of temperatures. From liquid-vapor coexistence simulations, we estimated the critical points and studied the spontaneous evaporation of these water models. Moreover, we investigated the influence of the system size, choice of the pressure-coupling algorithm, and rate of heating on the process and compared them with the experimental data. We found that modern rigid three-point water models reproduce the critical point surprisingly well. Furthermore, we discovered that the critical temperature correlates with the quadrupole moment of the respective water model. This indicates that the spatial arrangement of the partial charges is important for reproducing the liquid-vapor phase transition. Our findings may guide the selection of water models for simulations conducted at high temperatures.
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Affiliation(s)
- Patrick K. Quoika
- Center for Functional Protein
Assemblies, Technical University of Munich, Ernst-Otto-Fischer-Str. 8, Garching 85748, Germany
| | - Martin Zacharias
- Center for Functional Protein
Assemblies, Technical University of Munich, Ernst-Otto-Fischer-Str. 8, Garching 85748, Germany
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Skarmoutsos I, Henao A, Guardia E, Samios J. On the Different Faces of the Supercritical Phase of Water at a Near-Critical Temperature: Pressure-Induced Structural Transitions Ranging from a Gaslike Fluid to a Plastic Crystal Polymorph. J Phys Chem B 2021; 125:10260-10272. [PMID: 34491748 DOI: 10.1021/acs.jpcb.1c05053] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The present study reports a systematic analysis of a wide variety of structural, thermodynamic, and dynamic properties of supercritical water along the near-critical isotherm of T = 1.03Tc and up to extreme pressures, using molecular dynamics and Monte Carlo simulations. The methodology employed provides solid evidence about the existence of a structural transition from a liquidlike fluid to a compressed, tightly packed liquid, in the density and pressure region around 3.4ρc and 1.17 GPa, introducing an alternative approach to locate the crossing of the Frenkel line. Around 8.5 GPa another transition to a face-centered-cubic plastic crystal polymorph with density 5.178ρc is also observed, further confirmed by Gibbs free energy calculations using the two-phase thermodynamic model. The isobaric heat capacity maximum, closely related to the crossing of the Widom line, has also been observed around 0.8ρc, where the local density augmentation is also maximized. Another structural transition has been observed at 0.2ρc, related to the transformation of the fluid to a dilute gas at lower densities. These findings indicate that a near-critical isotherm can be divided into different domains where supercritical water exhibits distinct behavior, ranging from a gaslike one to a plastic crystal one.
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Affiliation(s)
- Ioannis Skarmoutsos
- Theoretical and Physical Chemistry Institute, National Hellenic Research Foundation, Vas. Constantinou 48, GR-116 35, Athens, Greece
| | - Andrés Henao
- Dynamics of Condensed Matter and Center for Sustainable Systems Design, Department of Chemistry, University of Paderborn, Warburger Strasse 100, D-33098 Paderborn, Germany
| | - Elvira Guardia
- Departament de Física, Universitat Politècnica de Catalunya, Campus Nord-Edifici B4-B5, Jordi Girona 1-3, Barcelona E-08034, Spain
| | - Jannis Samios
- Department of Chemistry, Laboratory of Physical Chemistry, National and Kapodistrian University of Athens, Panepistimiopolis GR-157 71, Athens, Greece
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Skarmoutsos I, Guardia E, Samios J. Local structural fluctuations, hydrogen bonding and structural transitions in supercritical water. J Supercrit Fluids 2017. [DOI: 10.1016/j.supflu.2017.08.004] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Ruppeiner G, Dyjack N, McAloon A, Stoops J. Solid-like features in dense vapors near the fluid critical point. J Chem Phys 2017; 146:224501. [DOI: 10.1063/1.4984915] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Affiliation(s)
- George Ruppeiner
- Division of Natural Sciences, New College of Florida, 5800 Bay Shore Road, Sarasota, Florida 34243, USA
| | - Nathan Dyjack
- Center for Genes, Environment & Health, National Jewish Health, 1400 S Jackson St., Denver, Colorado 80206, USA
| | - Abigail McAloon
- Oak Hill School, 86397 Eldon Schafer Dr, Eugene, Oregon 97405, USA
| | - Jerry Stoops
- Division of Natural Sciences, New College of Florida, 5800 Bay Shore Road, Sarasota, Florida 34243, USA
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Collisional cross-section of water molecules in vapour studied by means of 1H relaxation in NMR. Sci Rep 2016; 6:38492. [PMID: 28008913 PMCID: PMC5180102 DOI: 10.1038/srep38492] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2016] [Accepted: 11/11/2016] [Indexed: 11/08/2022] Open
Abstract
In gas phase, collisions that affect the rotational angular momentum lead to the return of the magnetization to its equilibrium (relaxation) in Nuclear Magnetic Resonance (NMR). To the best of our knowledge, the longitudinal relaxation rates R1 = 1/T1 of protons in H2O and HDO have never been measured in gas phase. We report R1 in gas phase in a field of 18.8 T, i.e., at a proton Larmor frequency ν0 = 800 MHz, at temperatures between 353 and 373 K and pressures between 9 and 101 kPa. By assuming that spin rotation is the dominant relaxation mechanism, we estimated the effective cross-section σJ for the transfer of angular momentum due to H2O-H2O and HDO-D2O collisions. Our results allow one to test theoretical predictions of the intermolecular potential of water in gas phase.
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Pan Z, Pitt WG, Zhang Y, Wu N, Tao Y, Truscott TT. The upside-down water collection system of Syntrichia caninervis. NATURE PLANTS 2016; 2:16076. [PMID: 27302768 DOI: 10.1038/nplants.2016.76] [Citation(s) in RCA: 33] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/18/2015] [Accepted: 04/20/2016] [Indexed: 05/24/2023]
Abstract
Desert plants possess highly evolved water conservation and transport systems, from the root structures that maximize absorption of scarce ground water(1-5), to the minimization of leaf surface area(6) to enhance water retention. Recent attention has focused on leaf structures that are adapted to collect water and promote nucleation from humid air(7-9). Syntrichia caninervis Mitt. (Pottiaceae) is one of the most abundant desert mosses in the world and thrives in an extreme environment with multiple but limited water resources (such as dew, fog, snow and rain), yet the mechanisms for water collection and transport have never been completely revealed. S. caninervis has a unique adaptation: it uses a tiny hair (awn) on the end of each leaf to collect water, in addition to that collected by the leaves themselves. Here we show that the unique multiscale structures of the hair are equipped to collect and transport water in four modes: nucleation of water droplets and films on the leaf hair from humid atmospheres; collection of fog droplets on leaf hairs; collection of splash water from raindrops; and transportation of the acquired water to the leaf itself. Fluid nucleation is accomplished in nanostructures, whereas fog droplets are gathered in areas where a high density of small barbs are present and then quickly transported to the leaf at the base of the hair. Our observations reveal nature's optimization of water collection by coupling relevant multiscale physical plant structures with multiscale sources of water.
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Affiliation(s)
- Zhao Pan
- Department of Mechanical Engineering, Brigham Young University, 435 CTB, Provo, Utah 84602, USA
| | - William G Pitt
- Department of Chemical Engineering, Brigham Young University, Clyde Building, Room 350, Provo, Utah 84602, USA
| | - Yuanming Zhang
- Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi, 830011, Xinjiang, People's Republic of China
| | - Nan Wu
- Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi, 830011, Xinjiang, People's Republic of China
| | - Ye Tao
- Key Laboratory of Biogeography and Bioresources, Xinjiang Institute of Ecology and Geography, Chinese Academy of Sciences, 818 South Beijing Road, Urumqi, 830011, Xinjiang, People's Republic of China
| | - Tadd T Truscott
- Department of Mechanical and Aerospace Engineering, Utah State University, 419J 4130 Old Main Road, Logan, Utah 84322, USA
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Huang L, Lambrakos SG, Shabaev A, Bernstein N, Massa L. Molecular analysis of water clusters: Calculation of the cluster structures and vibrational spectrum using density functional theory. CR CHIM 2015. [DOI: 10.1016/j.crci.2014.12.009] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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9
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Lasich M, Johansson EL, Ramjugernath D. Monte Carlo simulations of water solubility and structures in poly(difluoromethylene). MOLECULAR SIMULATION 2012. [DOI: 10.1080/08927022.2012.731505] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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Ruppeiner G. Thermodynamic curvature from the critical point to the triple point. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2012; 86:021130. [PMID: 23005745 DOI: 10.1103/physreve.86.021130] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/30/2012] [Indexed: 06/01/2023]
Abstract
I evaluate the thermodynamic curvature R for fourteen pure fluids along their liquid-vapor coexistence curves, from the critical point to the triple point, using thermodynamic input from the NIST Chemistry WebBook. In this broad overview, R is evaluated in both the coexisting liquid and vapor phases. R is an invariant whose magnitude |R| is a measure of the size of mesoscopic organized structures in a fluid, and whose sign specifies whether intermolecular interactions are effectively attractive (R<0) or repulsive (R>0). I discuss five principles for R in pure fluids: (1) Near the critical point, the attractive part of the interactions forms loose structures of size |R| proportional to the correlation volume ξ(3), and the sign of R is negative. (2) In the vapor phase, there are instances of compact clusters of size |R| formed by the attractive part of the interactions and prevented from collapse by the repulsive part of the interactions, and the sign of R is positive. (3) In the asymptotic critical point regime, the R's in the coexisting liquid and vapor phases are equal to each other, i.e., commensurate. (4) Outside the asymptotic critical-point regime incommensurate R's may be associated with metastability. (5) The compact liquid phase has |R| on the order of the volume of a molecule, with the sign of R being negative for a liquidlike state held together by attractive interactions and the sign of R being positive for a solidlike state held up by repulsive interactions. These considerations amplify and extend the application of thermodynamic curvature in pure fluids.
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Affiliation(s)
- George Ruppeiner
- Division of Natural Sciences, New College of Florida, 5800 Bay Shore Road, Sarasota, Florida 34243-2109, USA
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Skarmoutsos I, Guardia E. Effect of the local hydrogen bonding network on the reorientational and translational dynamics in supercritical water. J Chem Phys 2010; 132:074502. [DOI: 10.1063/1.3305326] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
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12
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Asare E, Musah AR, Curotto E, Freeman DL, Doll JD. The thermodynamic and ground state properties of the TIP4P water octamer. J Chem Phys 2009; 131:184508. [DOI: 10.1063/1.3259047] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Lenz A, Ojamäe L. A theoretical study of water equilibria: The cluster distribution versus temperature and pressure for (H2O)n, n=1–60, and ice. J Chem Phys 2009; 131:134302. [DOI: 10.1063/1.3239474] [Citation(s) in RCA: 52] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Bolton K, Johansson E, Jönsson L, Ahlström P. Simulation of water clusters in vapour, alkanes and polyethylenes. MOLECULAR SIMULATION 2009. [DOI: 10.1080/08927020902787804] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Benjamin KM, Schultz AJ, Kofke DA. Fourth and Fifth Virial Coefficients of Polarizable Water. J Phys Chem B 2009; 113:7810-5. [DOI: 10.1021/jp901232m] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Kenneth M. Benjamin
- Department of Chemical and Biological Engineering, South Dakota School of Mines and Technology, Rapid City, South Dakota 57701, and Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260-4200
| | - Andrew J. Schultz
- Department of Chemical and Biological Engineering, South Dakota School of Mines and Technology, Rapid City, South Dakota 57701, and Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260-4200
| | - David A. Kofke
- Department of Chemical and Biological Engineering, South Dakota School of Mines and Technology, Rapid City, South Dakota 57701, and Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260-4200
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16
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Molecular simulation of the effect of ionic impurities and external electric fields on rod-like water clusters in polyethylene. POLYMER 2008. [DOI: 10.1016/j.polymer.2008.09.052] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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17
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Shevkunov SV. Charge separation in water molecule clusters under thermal fluctuations: 1. Intermolecular interactions. COLLOID JOURNAL 2008. [DOI: 10.1134/s1061933x08050141] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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18
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Johansson E, Bolton K, Theodorou DN, Ahlström P. Formation of rodlike structures of water between oppositely charged ions in decane and polyethylene. J Chem Phys 2007; 127:191101. [DOI: 10.1063/1.2811721] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Johansson E, Bolton K, Ahlström P. Water absorption in polyethylene under external electric fields. J Chem Phys 2007; 127:024902. [PMID: 17640146 DOI: 10.1063/1.2750340] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023] Open
Abstract
Monte Carlo simulations of the solubility and structure of water in polyethylene in thermodynamic equilibrium with liquid water were performed in external fields ranging from 2 x 10(5) to 4 x 10(9) V/m. For a given equilibrium temperature and pressure, the water solubility decreases at higher fields. This occurs since it is energetically favorable for water molecules to be in the pure water phase than in the polyethylene matrix at high field strengths, and results in an increased density in the water phase. However, fields relevant to high voltage conduction (in the absence of defects that can lead to large local field strengths) do not change the solubility. In addition, at large fields the number of water clusters decreases for all cluster sizes. The rate of decrease is highest for large clusters, and a larger fraction of water molecules exist as monomers in the polyethylene matrix at high fields. Large fields also cause alignment of the water molecules, which leads to more clusters with linear topologies and hence an increase in the cluster radius of gyration.
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Affiliation(s)
- E Johansson
- School of Engineering, University College of Borås, SE-501 90 Borås, Sweden
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Johansson E, Bolton K, Theodorou DN, Ahlström P. Monte Carlo simulations of equilibrium solubilities and structure of water in n-alkanes and polyethylene. J Chem Phys 2007; 126:224902. [PMID: 17581078 DOI: 10.1063/1.2745296] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Gibbs ensemble Monte Carlo methods based on a force field that combines the simple point charge [Berendsen et al., in Intermolecular Forces, edited by Pullman (Reidel, Dordrecht, 1981), p. 331] and transferable potentials for phase equilibria [Martin and Siepmann, J. Phys. Chem. B 102, 2659 (1998)] models were used to study the equilibrium properties of binary systems consisting of water and n-alkanes with chain lengths from hexane to hexadecane. In addition, systems where extended linear alkane chains (up to 300 carbon units long) were used to represent amorphous polyethylene were simulated in the presence of water using a connectivity altering osmotic Gibbs ensemble. In these simulations the equilibrium between a liquid water phase and a polymer phase into which water was inserted was studied. The predicted solubilities, which were determined between 350 and 550 K, are in good agreement with experiment, where experimental results are available, and the density of water molecules in the hydrocarbons is approximately 63% as high as in saturated water vapor under the same conditions. At the lower temperatures most of the water exists as monomers; increasing the temperature leads to an increase in the density of water in the alkane phase and hence in the fraction of molecules that participate in clusters. Dimers are the most prevalent clusters in all hydrocarbons and at all temperatures studied, and the fraction of clusters of given size decrease with increasing cluster size. A large fraction of trimers, tetramers, and pentamers, which are the cluster sizes for which topologies have been studied, are cyclic at low temperatures, but at higher temperatures linear structures predominate. The same properties are observed for pure water vapor clusters in equilibrium with the liquid phase, showing that the cluster topologies are not significantly affected by the surrounding hydrocarbon.
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Affiliation(s)
- E Johansson
- School of Engineering, University College of Borås, SE-501 90 Borås, Sweden
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Skarmoutsos I, Samios J. Local Density Inhomogeneities and Dynamics in Supercritical Water: A Molecular Dynamics Simulation Approach. J Phys Chem B 2006; 110:21931-7. [PMID: 17064161 DOI: 10.1021/jp060955p] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Abstract
Molecular dynamics atomistic simulations in the canonical ensemble (NVT-MD) have been used to investigate the "Local Density Inhomogeneities and their Dynamics" in pure supercritical water. The simulations were carried out along a near-critical isotherm (Tr = T/Tc = 1.03) and for a wide range of densities below and above the critical one (0.2 rho(c) - 2.0 rho(c)). The results obtained reveal the existence of significant local density augmentation effects, which are found to be sufficiently larger in comparison to those reported for nonassociated fluids. The time evolution of the local density distribution around each molecule was studied in terms of the appropriate time correlation functions C(Delta)rhol(t). It is found that the shape of these functions changes significantly by increasing the density of the fluid. Finally, the local density reorganization times for the first and second coordination shell derived from these correlations exhibit a decreasing behavior by increasing the density of the system, signifying the density effect upon the dynamics of the local environment around each molecule.
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Affiliation(s)
- Ioannis Skarmoutsos
- Department of Chemistry, Laboratory of Physical Chemistry, University of Athens, Panepistimiopolis 157-71, Athens, Greece
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Benjamin KM, Schultz AJ, Kofke DA. Gas-Phase Molecular Clustering of TIP4P and SPC/E Water Models from Higher-Order Virial Coefficients. Ind Eng Chem Res 2006. [DOI: 10.1021/ie051160s] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Affiliation(s)
- Kenneth M. Benjamin
- Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260-4200
| | - Andrew J. Schultz
- Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260-4200
| | - David A. Kofke
- Department of Chemical and Biological Engineering, University at Buffalo, The State University of New York, Buffalo, New York 14260-4200
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