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García-Miranda JJ, Vargas R, Garza J. Finite element method as an alternative to study the electronic structure of confined atoms. Phys Rev E 2023; 108:035302. [PMID: 37849191 DOI: 10.1103/physreve.108.035302] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2023] [Accepted: 08/17/2023] [Indexed: 10/19/2023]
Abstract
The finite element method (FEM) based on a nonregular mesh is used to solve Hartree-Fock and Kohn-Sham equations for three atoms (hydrogen, helium, and beryllium) confined by finite and infinite potentials, defined in terms of piecewise functions or functions with a well-defined first derivative. This approach's reliability is shown when contrasted with Roothaan's approach, which depends on a basis set. Therefore, its exponents must be optimized for each confinement imposed over each atom, which is a monumental task. The comparison between our numerical approach and Roothaan's approach is made by using total and orbitals energies from the Hartree-Fock method, where there are several comparison sources. Regarding the Kohn-Sham method, there are few published data and consequently the results reported here can be used as a benchmark for future comparisons. The way to solve Hartree-Fock or Kohn-Sham equations by the FEM is entirely appropriate to study confined atoms with any form of confinement potential. This article represents a step toward developing a fully numerical quantum chemistry code free of basis sets to obtain the electronic structure of many-electron atoms confined by arbitrary confinement.
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Affiliation(s)
- Juan-José García-Miranda
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa C.P. 09340, México City, México
| | - Rubicelia Vargas
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa C.P. 09340, México City, México
| | - Jorge Garza
- Departamento de Química, División de Ciencias Básicas e Ingeniería, Universidad Autónoma Metropolitana-Iztapalapa, San Rafael Atlixco 186, Col. Vicentina, Iztapalapa C.P. 09340, México City, México
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Morcillo-Arencibia MF, Alcaraz-Pelegrina JM, Sarsa AJ, Randazzo JM. An off-center endohedrally confined hydrogen molecule. Phys Chem Chem Phys 2022; 24:22971-22977. [PMID: 36125249 DOI: 10.1039/d2cp03456e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
In this study, we address the problem of a C60 endohedrally confined hydrogen molecule through a configuration-interaction approach to electronic dynamics. Modeling the confinement by means of a combination of two Woods-Saxon potentials, we analyze the stability of the system as a function of the nuclei position through the behavior of the electronic spectrum. After studying the convergence of two different partial wave expansions, one related to the molecular Coulomb centers and the other related to the off-centering of the C60 well, we found that the second approach provides a more accurate description of the system. Furthermore, we observed that the inter-atomic distance changes based on the position of the atoms inside the cavity. Thus, to obtain the most favourable energetic configuration for the molecule, it should be positioned inside the cavity next to the structure, where its size decreases.
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Affiliation(s)
- Milagros F Morcillo-Arencibia
- Departamento de Física, Campus de Rabanales, Edif. C2. Universidad de Córdoba, E-14071 Córdoba, Spain. .,Centro Atómico Bariloche, CNEA and CONICET, S. C. de Bariloche, Río Negro, Argentina
| | | | - Antonio J Sarsa
- Departamento de Física, Campus de Rabanales, Edif. C2. Universidad de Córdoba, E-14071 Córdoba, Spain.
| | - Juan M Randazzo
- Centro Atómico Bariloche, CNEA and CONICET, S. C. de Bariloche, Río Negro, Argentina
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Cammi R. Linear chains of hydrogen molecules under pressure: An extreme-pressure continuum model study. J Chem Phys 2019; 150:164122. [PMID: 31042923 DOI: 10.1063/1.5075511] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
New analytical gradients of the electronic energy of a confined molecular system within the extreme-pressure continuum model are presented and applied to the study of the equilibrium geometries of linear chains of hydrogen molecules nH2 under pressures. The decrease in inter- and intramolecular H-H distances with the increase in the pressure has been studied up to 80 GPa. We have also shown that the compression of the bond-lengths can be interpreted in terms of the effect of the confining potential of the electron density of the molecular systems.
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Affiliation(s)
- Roberto Cammi
- Department of Chemistry, Life Science and Environmental Sustainability, University of Parma, I-43100 Parma, Italy
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Cammi R, Chen B, Rahm M. Analytical calculation of pressure for confined atomic and molecular systems using the eXtreme-Pressure Polarizable Continuum Model. J Comput Chem 2018; 39:2243-2250. [PMID: 30242867 DOI: 10.1002/jcc.25544] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/14/2018] [Revised: 07/02/2018] [Accepted: 07/04/2018] [Indexed: 11/06/2022]
Abstract
We show that the pressure acting on atoms and molecular systems within the compression cavity of the eXtreme-Pressure Polarizable Continuum method can be expressed in terms of the electron density of the systems and of the Pauli-repulsion confining potential. The analytical expression holds for spherical cavities as well as for cavities constructed from van der Waals spheres of the constituting atoms of the molecular systems. © 2018 Wiley Periodicals, Inc.
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Affiliation(s)
- Roberto Cammi
- Department of Chemical Science, Life Science and Environmental Sustainability, University of Parma, Parma, Italy
| | - Bo Chen
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York
| | - Martin Rahm
- Department of Chemistry and Chemical Engineering, Division of Chemistry and Biochemistry, Chalmers University of Technology, Gothenburg, Sweden
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Pupyshev VI, Montgomery HE. One- and multiconfigurational study of excited states of He atom in a small impenetrable cavity. Theor Chem Acc 2017. [DOI: 10.1007/s00214-017-2168-x] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Vyboishchikov SF. A Simple Local Correlation Energy Functional for Spherically Confined Atoms from ab Initio Correlation Energy Density. Chemphyschem 2017; 18:3478-3484. [DOI: 10.1002/cphc.201700774] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2017] [Revised: 08/26/2017] [Indexed: 11/08/2022]
Affiliation(s)
- Sergei F. Vyboishchikov
- Institut de Química Computacional i Catàlisi and Departament de Química; Universitat de Girona; Carrer Maria Aurèlia Capmany 17003 Girona Spain
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Çakır B, Yakar Y, Özmen A. Investigation of magnetic field effects on binding energies in spherical quantum dot with finite confinement potential. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2017.06.064] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Vyboishchikov SF. Correlation energy, correlated electron density, and exchange-correlation potential in some spherically confined atoms. J Comput Chem 2016; 37:2677-2686. [PMID: 27730648 DOI: 10.1002/jcc.24493] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2016] [Revised: 09/01/2016] [Accepted: 09/02/2016] [Indexed: 11/09/2022]
Abstract
We report correlation energies, electron densities, and exchange-correlation potentials obtained from configuration interaction and density functional calculations on spherically confined He, Be, Be2+ , and Ne atoms. The variation of the correlation energy with the confinement radius Rc is relatively small for the He, Be2+ , and Ne systems. Curiously, the Lee-Yang-Parr (LYP) functional works well for weak confinements but fails completely for small Rc . However, in the neutral beryllium atom the CI correlation energy increases markedly with decreasing Rc . This effect is less pronounced at the density-functional theory level. The LYP functional performs very well for the unconfined Be atom, but fails badly for small Rc . The standard exchange-correlation potentials exhibit significant deviation from the "exact" potential obtained by inversion of Kohn-Sham equation. The LYP correlation potential behaves erratically at strong confinements. © 2016 Wiley Periodicals, Inc.
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Affiliation(s)
- Sergei F Vyboishchikov
- Departament de Química, Institut de Química Computacional i Catàlisi, Carrer Maria Aurèlia Capmany 69, Universitat de Girona, 17003, Girona, Spain.
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Vyboishchikov SF. Modeling exact exchange potential in spherically confined atoms. J Comput Chem 2015; 36:2037-43. [DOI: 10.1002/jcc.24040] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2015] [Revised: 07/08/2015] [Accepted: 07/10/2015] [Indexed: 01/08/2023]
Affiliation(s)
- Sergei F. Vyboishchikov
- Departament de Química; Institut de Química Computacional i Catàlisi, Universitat de Girona; 17071 Girona Spain
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Abstract
The Lagrange-mesh method has the simplicity of a calculation on a mesh and can have the accuracy of a variational method.
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Affiliation(s)
- D. Baye
- Physique Quantique
- and Physique Nucléaire Théorique et Physique Mathématique
- C.P. 229
- Université Libre de Bruxelles (ULB)
- B-1050 Brussels
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Ryabinkin IG, Staroverov VN. Accurate explicitly correlated wave functions for two electrons in a square. J Chem Phys 2011; 135:014106. [DOI: 10.1063/1.3603451] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Pan XY, Sahni V, Massa L, Sen K. New expression for the expectation value integral for a confined helium atom. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.01.044] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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Aquino N. The Hydrogen and Helium Atoms Confined in Spherical Boxes. ADVANCES IN QUANTUM CHEMISTRY 2009. [DOI: 10.1016/s0065-3276(09)00608-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Cruz SA. Thomas–Fermi–Dirac–Weizsäcker Density Functional Formalism Applied to the Study of Many-electron Atom Confinement by Open and Closed Boundaries. ADVANCES IN QUANTUM CHEMISTRY 2009. [DOI: 10.1016/s0065-3276(09)00612-1] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Garza J, Vargas R. Comparative Study Between the Hartree-Fock and Kohn-Sham Models for the Lowest Singlet and Triplet States of the Confined Helium Atom. ADVANCES IN QUANTUM CHEMISTRY 2009. [DOI: 10.1016/s0065-3276(09)00611-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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Borgoo A, Tozer DJ, Geerlings P, De Proft F. Confinement effects on excitation energies and regioselectivity as probed by the Fukui function and the molecular electrostatic potential. Phys Chem Chem Phys 2009; 11:2862-8. [DOI: 10.1039/b820114e] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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Borgoo A, Tozer DJ, Geerlings P, De Proft F. Influence of confinement on atomic and molecular reactivity indicators in DFT. Phys Chem Chem Phys 2008; 10:1406-10. [DOI: 10.1039/b716727j] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]
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