1
|
Yue L, Zhao W, Li J, Wu R, Wang Y, Zhang H, Zhao Y. Low-temperature CO preferential oxidation in H 2-rich stream over Indium modified Pd-Cu/Al 2O 3 catalyst. J Colloid Interface Sci 2024; 662:109-118. [PMID: 38340510 DOI: 10.1016/j.jcis.2024.02.003] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2023] [Revised: 01/28/2024] [Accepted: 02/01/2024] [Indexed: 02/12/2024]
Abstract
The impact of Indium (In) doping upon the catalytic performance of Pd-Cu/Al2O3 for carbon monoxide preferential oxidation (CO-PROX) in hydrogen (H2) rich atmosphere at low temperature has been studied. A series of catalysts with extremely low palladium (Pd) loading (0.06 wt%) are synthesized by the facile co-impregnation method. When the In/copper (Cu) atomic ratio equals 0.25, Pd-Cu-In0.25/Al2O3 can keep 40% CO conversion and 100% carbon dioxide (CO2) selectivity at least 120 min at 30 °C, which is significantly superior to the catalytic performance of Pd-Cu/Al2O3. The elaborate characterization findings reveal that the added In species to Pd-Cu/Al2O3 causes Indium oxide (In2O3) to generate, which produces the interaction of In2O3 with Pd-Cu/Al2O3, further promoting the dispersion of copper chloride hydroxide (Cu2Cl(OH)3). Moreover, the modification of In facilitates the re-oxidation of Pd0 to Pd+ through reducing the formation of palladium hydride (PdHx) during the CO-PROX reaction. Meanwhile, the addition of In leads to the decrease of Cu+ electron cloud density, making it easier to be oxidized to Cu2+. Collectively, the easy re-oxidation of Pd0 and Cu+ is favorable to fulfill the Wacker cycle between Pd and Cu species, thus improving the catalytic performance for CO-PROX.
Collapse
Affiliation(s)
- Lijun Yue
- Engineering Research Center of Ministry of Education for Fine Chemicals, Shanxi University, Taiyuan 030006, China; School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China
| | - Wanjun Zhao
- Engineering Research Center of Ministry of Education for Fine Chemicals, Shanxi University, Taiyuan 030006, China; School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China
| | - Jinfang Li
- Engineering Research Center of Ministry of Education for Fine Chemicals, Shanxi University, Taiyuan 030006, China; School of Chemistry and Chemical Engineering, Shanxi University, Taiyuan 030006, China
| | - Ruifang Wu
- Engineering Research Center of Ministry of Education for Fine Chemicals, Shanxi University, Taiyuan 030006, China
| | - Yongzhao Wang
- Engineering Research Center of Ministry of Education for Fine Chemicals, Shanxi University, Taiyuan 030006, China.
| | - Hongxi Zhang
- Engineering Research Center of Ministry of Education for Fine Chemicals, Shanxi University, Taiyuan 030006, China
| | - Yongxiang Zhao
- Engineering Research Center of Ministry of Education for Fine Chemicals, Shanxi University, Taiyuan 030006, China
| |
Collapse
|
2
|
Ford TA. The Structures, Molecular Orbital Properties and Vibrational Spectra of the Homo- and Heterodimers of Sulphur Dioxide and Ozone. An Ab Initio Study. Molecules 2021; 26:molecules26030626. [PMID: 33504103 PMCID: PMC7865749 DOI: 10.3390/molecules26030626] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/01/2021] [Revised: 01/18/2021] [Accepted: 01/20/2021] [Indexed: 11/16/2022] Open
Abstract
The structures of a number of dimers of sulphur dioxide and ozone were optimized by means of a series of ab initio calculations. The dimer species were classified as either genuine energy minima or transition states of first or higher order, and the most probable structures consistent with the experimental data were confirmed. The molecular orbitals engaged in the interactions resulting in adduct formation were identified and relations between the orbitals of the dimers of the valence isoelectronic monomer species were examined. The vibrational spectra of the most probable structures were computed and compared with those reported in the literature, particularly with spectra observed in cryogenic matrices. The calculations were extended to predict the properties of a number of possible heterodimers formed between sulphur dioxide and ozone.
Collapse
Affiliation(s)
- Thomas A Ford
- School of Chemistry and Physics, University of KwaZulu-Natal, Westville Campus, Private Bag X54001, Durban 4000, South Africa
| |
Collapse
|
3
|
Kjaersgaard A, Vogt E, Hansen AS, Kjaergaard HG. Room Temperature Gas-Phase Detection and Gibbs Energies of Water Amine Bimolecular Complex Formation. J Phys Chem A 2020; 124:7113-7122. [DOI: 10.1021/acs.jpca.0c07399] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Alexander Kjaersgaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100Copenhagen, Denmark
| | - Emil Vogt
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100Copenhagen, Denmark
| | - Anne S. Hansen
- Department of Chemistry, University of Pennsylvania, Philadelphia, Pennsylvania 19104-6323, United States
| | - Henrik G. Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100Copenhagen, Denmark
| |
Collapse
|
4
|
Bhattacharya I, Sadhukhan J, Biswas S, Chakraborty T. Medium-Dependent Crossover from the Red to Blue Shift of the Donor’s Stretching Fundamental in the Binary Hydrogen-Bonded Complexes of CDCl3 with Ethers and Ketones. J Phys Chem A 2020; 124:7259-7270. [DOI: 10.1021/acs.jpca.0c03946] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Indrani Bhattacharya
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
| | - Jayshree Sadhukhan
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
- Department of Chemistry, Govt. General Degree College, Singur, Hooghly 712409, West Bengal, India
| | - Souvick Biswas
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
| | - Tapas Chakraborty
- School of Chemical Sciences, Indian Association for the Cultivation of Science, Kolkata 700032, India
| |
Collapse
|
5
|
Quantum-mechanical study of energies, structures and vibrational spectra of the HF complexed with dimethyl ether. Chem Phys Lett 2019. [DOI: 10.1016/j.cplett.2019.07.018] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
|
6
|
Sheng X, Song X, Zhu H, Ngwenya CA, Zhao H. Effects of the inter- and intra-molecular hydrogen bonding interactions in forming atmospheric malonic acid-containing clusters. Chem Phys 2019. [DOI: 10.1016/j.chemphys.2019.05.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
|
7
|
Hansen AS, Vogt E, Kjaergaard HG. Gibbs energy of complex formation – combining infrared spectroscopy and vibrational theory. INT REV PHYS CHEM 2019. [DOI: 10.1080/0144235x.2019.1608689] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
Affiliation(s)
- Anne S. Hansen
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
| | - Emil Vogt
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
| | | |
Collapse
|
8
|
Zhao H, Song X, Zhang Y, Sheng X. Molecular interaction between MeOH and genistein during soy extraction. RSC Adv 2019; 9:39170-39179. [PMID: 35540639 PMCID: PMC9076023 DOI: 10.1039/c9ra05976h] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2019] [Accepted: 11/22/2019] [Indexed: 11/23/2022] Open
Abstract
Genistein has received great attention due to its possible anti-oxidant properties. The interaction between genistein and the extraction solvent helps in understanding the extraction efficiency. Hydrogen bonding plays a crucial role in liquid systems. Density functional theory quantum chemical computations in both gas phase and solution were performed to investigate the molecular interaction between genistein and methanol. All the resulting complexes (MeOH : genistein = 1 : 1, 2 : 1, 3 : 1, 6 : 1) were studied using the B3LYP-D3 computational level and the cc-pVTZ basis set. Binding energies demonstrate that more MeOH molecules surrounding genistein could stabilize the system more. Geometry optimizations show that there are strong O–H⋯O interactions between MeOH and genistein. The electron density and the corresponding Laplacian of charge density at bond critical points were also calculated using AIM theory, and the results are in line with the structural and energetic analysis of the studied system. Moreover, energy decomposition analysis shows that the exchange energy term has the largest contribution to the attraction interaction energy as compared with other energy terms. Meanwhile, this study shows that the MeOH–genistein system is more stable under basic conditions. This study could help increase the efficiency of extraction. The interaction between genistein and extraction solvent helps in understanding the extraction efficiency.![]()
Collapse
Affiliation(s)
- Hailiang Zhao
- Province Key Laboratory of Cereal Resource Transformation and Utilization
- Henan University of Technology
- 450001 Zhengzhou
- China
- College of Chemistry, Chemical and Environmental Engineering
| | - Xue Song
- College of Chemistry, Chemical and Environmental Engineering
- Henan University of Technology
- 450001 Zhengzhou
- China
| | - Yingming Zhang
- College of Chemistry, Chemical and Environmental Engineering
- Henan University of Technology
- 450001 Zhengzhou
- China
| | - Xia Sheng
- College of Chemistry, Chemical and Environmental Engineering
- Henan University of Technology
- 450001 Zhengzhou
- China
| |
Collapse
|
9
|
Grinvald II, Kalagaev IY, Petukhov AN, Grushevskaya AI, Kapustin RV, Vorotyntsev IV. Association of Haloforms in Condensed and Gas Phases. Ir Spectroscopy and Dft Calculations. J STRUCT CHEM+ 2018. [DOI: 10.1134/s0022476618020087] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
|
10
|
Sheng X, Jiang X, Zhao H, Wan D, Liu Y, Ngwenya CA, Du L. FTIR study of hydrogen bonding interaction between fluorinated alcohol and unsaturated esters. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2018; 198:239-247. [PMID: 29549865 DOI: 10.1016/j.saa.2018.03.019] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2017] [Revised: 02/25/2018] [Accepted: 03/08/2018] [Indexed: 06/08/2023]
Abstract
The 1:1 complexes of two unsaturated esters with 2,2,2-trifluoroethanol (TFE) were investigated experimentally and computationally. The experimental observations of the spectral shifts of the OH-stretching vibrational transitions were obtained at 113cm-1 for TFE-methyl acrylate (MA) and 92cm-1 for TFE-vinyl acetate (VA). There are three docking sites in the two unsaturated esters for the incoming TFE. The predicted red shifts of the OH-stretching vibrational transitions were found to be larger for the OH⋯OC hydrogen bonded conformer than those for the OH⋯π and OH⋯O ones. The binding energies further prove that the OH⋯OC hydrogen bonded conformers are the most stable ones. On the basis of the DFT calculations as well as previous works, the carbonyl group is the best docking site for TFE. Furthermore, the thermodynamic equilibrium constants of TFE-MA and TFE-VA were obtained at 0.28 and 0.15 by combining the experimental spectra data and the DFT calculations. Consequently, the Gibbs free energies of formation were determined to be 3.2 and 4.8kJmol-1 for TFE-MA and TFE-VA, respectively. The quantum theory of atoms in molecules (AIM) and generalized Kohn-Sham energy decomposition analysis (GKS-EDA) were carried out for further characterization of the hydrogen bonding interactions. GKS-EDA shows an "electrostatic" dominated hydrogen bonding character for the OH⋯OC hydrogen bonds.
Collapse
Affiliation(s)
- Xia Sheng
- College of Chemistry, Chemical and Environmental Engineering, Henan University of Technology, Lianhua Street 100, 450001 Zhengzhou, China
| | - Xiaotong Jiang
- Environment Research Institute, Shandong University, Shanda South Road 27, 250100 Jinan, China
| | - Hailiang Zhao
- College of Chemistry, Chemical and Environmental Engineering, Henan University of Technology, Lianhua Street 100, 450001 Zhengzhou, China; Environment Research Institute, Shandong University, Shanda South Road 27, 250100 Jinan, China
| | - Dongjin Wan
- College of Chemistry, Chemical and Environmental Engineering, Henan University of Technology, Lianhua Street 100, 450001 Zhengzhou, China
| | - Yongde Liu
- College of Chemistry, Chemical and Environmental Engineering, Henan University of Technology, Lianhua Street 100, 450001 Zhengzhou, China
| | - Cleopatra Ashley Ngwenya
- College of Chemistry, Chemical and Environmental Engineering, Henan University of Technology, Lianhua Street 100, 450001 Zhengzhou, China
| | - Lin Du
- Environment Research Institute, Shandong University, Shanda South Road 27, 250100 Jinan, China.
| |
Collapse
|
11
|
Behera B, Das PK. Blue- and Red-Shifting Hydrogen Bonding: A Gas Phase FTIR and Ab Initio Study of RR'CO···DCCl 3 and RR'S···DCCl 3 Complexes. J Phys Chem A 2018; 122:4481-4489. [PMID: 29683668 DOI: 10.1021/acs.jpca.7b11962] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Blue-shifting H-bonded (C-D···O) complexes between CDCl3 and CH3HCO, (CH3)2CO, and C2H5(CH3)CO, and red-shifting H-bonded (C-D···S) complexes between CDCl3 with (CH3)2S and (C2H5)2S have been identified by Fourier transform infrared spectroscopy in the gas phase at room temperature. With increasing partial pressure of the components, a new band appears in the C-D stretching region of the vibrational spectra. The intensity of this band decreases with an increase in temperature at constant pressure, which provides the basis for identification of the H-bonded bands in the spectrum. The C-D stretching frequency of CDCl3 is blue-shifted by +7.1, +4, and +3.2 cm-1 upon complexation with CH3HCO, (CH3)2CO, and C2H5(CH3)CO, respectively, and red-shifted by -14 and -19.2 cm-1 upon complexation with (CH3)2S and (C2H5)2S, respectively. By using quantum chemical calculations at the MP2/6-311++G** level, we predict the geometry, electronic structural parameters, binding energy, and spectral shift of H-bonded complexes between CDCl3 and two series of compounds named RCOR' (H2CO, CH3HCO, (CH3)2CO, and C2H5(CH3)CO) and RSR' (H2S, CH3HS, (CH3)2S, and (C2H5)2S) series. The calculated and observed spectral shifts follow the same trends. With an increase in basicity of the H-bond acceptor, the C-D bond length increases, force constant decreases, and the frequency shifts to the red from the blue. The potential energy scans of the above complexes are done, which show that electrostatic attraction between electropositive D and electron-rich O/S causes bond elongation and red shift, and the electronic and nuclear repulsions lead to bond contraction and blue shifts. The dominance of the two opposing forces at the equilibrium geometry of the complex determines the nature of the shift, which changes both in magnitude and in direction with the basicity of the hydrogen-bond acceptor.
Collapse
Affiliation(s)
- B Behera
- Department of Inorganic and Physical Chemistry , Indian Institute of Science , Bangalore 560012 , India
| | - Puspendu K Das
- Department of Inorganic and Physical Chemistry , Indian Institute of Science , Bangalore 560012 , India
| |
Collapse
|
12
|
Ring-Size Effects on the Stability and Spectral Shifts of Hydrogen Bonded Cyclic Ethers Complexes. Sci Rep 2018; 8:1553. [PMID: 29367625 PMCID: PMC5784011 DOI: 10.1038/s41598-017-18191-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2017] [Accepted: 12/07/2017] [Indexed: 11/08/2022] Open
Abstract
In order to investigate ring-size effects on the stability and spectral shifts of hydrogen bonded cyclic ethers complexes, the strength of hydrogen bonds in gas phase complexes formed between 2,2,2-trifluoroethanol (TFE) and selected cyclic ethers were examined using FTIR spectroscopy. TFE was chosen as hydrogen bond donor in these complexes, while trimethylene oxide (TMO), tetrahydrofuran (THF) and tetrahydropyran (THP) were selected as hydrogen bond acceptors. Comparable OH-stretching red shifts were observed in the three kinds of complexes. The difference of red shifts is so small (<7 cm−1) for TFE−TMO/THF/THP complexes that one can conclude that their stabilities and the strength of the hydrogen bonds are nearly similar and do not show any marked dependence with the ring size of the hydrogen bond acceptor. The equilibrium constants for the complexation were determined, and atoms-in-molecules (AIM) and natural bond orbital (NBO) analyses were performed to further investigate the intermolecular interactions. Regardless of the ring size, hydrogen bonds in the complexes showed similar strength, in agreement with the observed OH-stretching red shifts.
Collapse
|
13
|
Mackeprang K, Vogt E, Lisy JM, Kjaergaard HG. Fundamental FH-stretching transition frequencies and oscillator strengths in hydrogen bonded FH complexes. Chem Phys Lett 2018. [DOI: 10.1016/j.cplett.2017.12.019] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
|
14
|
Hansen AS, Kjaergaard HG. Dimethyl Sulfoxide Complexes Detected at Ambient Conditions. J Phys Chem A 2017; 121:6046-6053. [DOI: 10.1021/acs.jpca.7b06102] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Anne S. Hansen
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
| | - Henrik G. Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen, Denmark
| |
Collapse
|
15
|
Zhao H, Tang S, Du L. Hydrogen bond docking site competition in methyl esters. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2017; 181:122-130. [PMID: 28351818 DOI: 10.1016/j.saa.2017.03.038] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Revised: 03/07/2017] [Accepted: 03/17/2017] [Indexed: 06/06/2023]
Abstract
The OH⋯O hydrogen bonds in the 2,2,2-trifluoroethanol (TFE)-methyl ester complexes in the gas phase have been investigated by FTIR spectroscopy and DFT calculations. Methyl formate (MF), methyl acetate (MA), and methyl trifluoroacetate (MTFA) were chosen as the hydrogen bond acceptors. A dominant inter-molecular hydrogen bond was formed between the OH group of TFE and different docking sites in the methyl esters (carbonyl oxygen or ester oxygen). The competition of the two docking sites decides the structure and spectral properties of the complexes. On the basis of the observed red shifts of the OH-stretching transition with respect to the TFE monomer, the order of the hydrogen bond strength can be sorted as TFE-MA (119cm-1)>TFE-MF (93cm-1)>TFE-MTFA (44cm-1). Combining the experimental infrared spectra with the DFT calculations, the Gibbs free energies of formation were determined to be 1.5, 4.5 and 8.6kJmol-1 for TFE-MA, TFE-MF and TFE-MTFA, respectively. The hydrogen bonding in the MTFA complex is much weaker than those of the TFE-MA and TFE-MF complexes due to the effect of the CF3 substitution on MTFA, while the replacement of an H atom with a CH3 group in methyl ester only slightly increases the hydrogen bond strength. Topological analysis and localized molecular orbital energy decomposition analysis was also applied to compare the interactions in the complexes.
Collapse
Affiliation(s)
- Hailiang Zhao
- Environment Research Institute, Shandong University, Shanda South Road 27, 250100, Shandong, China
| | - Shanshan Tang
- Environment Research Institute, Shandong University, Shanda South Road 27, 250100, Shandong, China
| | - Lin Du
- Environment Research Institute, Shandong University, Shanda South Road 27, 250100, Shandong, China.
| |
Collapse
|
16
|
Zhao H, Tang S, Zhang Q, Du L. Weak hydrogen bonding competition between O–H⋯π and O–H⋯Cl. RSC Adv 2017. [DOI: 10.1039/c7ra00901a] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The weak hydrogen bonding competition between O–H⋯π and O–H⋯Cl has been studied using FTIR spectroscopy and theoretical calculations.
Collapse
Affiliation(s)
- Hailiang Zhao
- Environment Research Institute
- Shandong University
- China
| | - Shanshan Tang
- Environment Research Institute
- Shandong University
- China
| | - Qun Zhang
- Environment Research Institute
- Shandong University
- China
| | - Lin Du
- Environment Research Institute
- Shandong University
- China
| |
Collapse
|
17
|
Mackeprang K, Xu ZH, Maroun Z, Meuwly M, Kjaergaard HG. Spectroscopy and dynamics of double proton transfer in formic acid dimer. Phys Chem Chem Phys 2016; 18:24654-62. [PMID: 27545453 DOI: 10.1039/c6cp03462d] [Citation(s) in RCA: 40] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
Abstract
We present the isolated gas phase infrared spectra of formic acid dimer, (HCOOH)2, and its deuterated counterpart formic-d acid, (DCOOH)2, at room temperature. The formic acid dimer spectrum was obtained by spectral subtraction of a spectrum of formic acid vapor recorded at low pressure from that recorded at a higher pressure. The spectra of formic acid vapor contain features from both formic acid monomer and formic acid dimer, but at low and high pressures of formic acid, the equilibrium is pushed towards the monomer and dimer, respectively. A similar approach was used for the formic-d acid dimer. Building on the previous development of the Molecular Mechanics with Proton Transfer (MMPT) force field for simulating proton transfer reactions, molecular dynamics (MD) simulations were carried out to interpret the experimental spectra in the OH-stretching region. Within the framework of MMPT, a combination of symmetric single and double minimum potential energy surfaces (PESs) provides a good description of the double proton transfer PES. In a next step, potential morphing together with electronic structure calculations at the B3LYP and MP2 level of theory was used to align the computed and experimentally observed spectral features in the OH-stretching region. From this analysis, a barrier for double proton transfer between 5 and 7 kcal mol(-1) was derived, which compares with a CCSD(T)/aug-cc-pVTZ calculated barrier of 7.9 kcal mol(-1). Such a combination of experimental and computational techniques for estimating barriers for proton transfer in gas phase systems is generic and holds promise for further improved PESs and energetics of these important systems. Additional MD simulations at the semi-empirical DFTB level of theory agree quite well for the center band position but underestimate the width of the OH-stretching band.
Collapse
Affiliation(s)
- Kasper Mackeprang
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark.
| | | | | | | | | |
Collapse
|
18
|
Lach J, Goclon J, Rodziewicz P. Structural flexibility of the sulfur mustard molecule at finite temperature from Car-Parrinello molecular dynamics simulations. JOURNAL OF HAZARDOUS MATERIALS 2016; 306:269-277. [PMID: 26774981 DOI: 10.1016/j.jhazmat.2015.12.027] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2015] [Revised: 12/12/2015] [Accepted: 12/16/2015] [Indexed: 06/05/2023]
Abstract
Sulfur mustard (SM) is one of the most dangerous chemical compounds used against humans, mostly at war conditions but also in terrorist attacks. Even though the sulfur mustard has been synthesized over a hundred years ago, some of its molecular properties are not yet resolved. We investigate the structural flexibility of the SM molecule in the gas phase by Car-Parrinello molecular dynamics simulations. Thorough conformation analysis of 81 different SM configurations using density functional theory is performed to analyze the behavior of the system at finite temperature. The conformational diversity is analyzed with respect to the formation of intramolecular blue-shifting CH⋯S and CH⋯Cl hydrogen bonds. Molecular dynamics simulations indicate that all structural rearrangements between SM local minima are realized either in direct or non-direct way, including the intermediate structure in the last case. We study the lifetime of the SM conformers and perform the population analysis. Additionally, we provide the anharmonic dynamical finite temperature IR spectrum from the Fourier Transform of the dipole moment autocorrelation function to mimic the missing experimental IR spectrum.
Collapse
Affiliation(s)
- Joanna Lach
- Department of General Physics and Spectroscopy, Vilnius University, Sauletekio av. 3-9, Vilnius 10222, Lithuania
| | - Jakub Goclon
- Interdisciplinary Center for Molecular Materials (ICMM) and Computer-Chemistry-Center (CCC), Friedrich-Alexander-University Erlangen-Nürnberg, Nägelsbachstr. 25, 91052 Erlangen, Germany
| | - Pawel Rodziewicz
- Institute of Chemistry, University of Bialystok, Hurtowa 1, 15-399 Bialystok, Poland.
| |
Collapse
|
19
|
Zhao H, Tang S, Li S, Ding L, Du L. Theoretical investigation of the hydrogen bond interactions of methanol and dimethylamine with hydrazone and its derivatives. Struct Chem 2016. [DOI: 10.1007/s11224-016-0749-2] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
|
20
|
Hansen AS, Maroun Z, Mackeprang K, Frandsen BN, Kjaergaard HG. Accurate thermodynamic properties of gas phase hydrogen bonded complexes. Phys Chem Chem Phys 2016; 18:23831-9. [DOI: 10.1039/c6cp04648g] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
The increase in temperature causes a decrease in equilibrium constant, which makes accurate determination of the enthalpy of complex formation possible.
Collapse
Affiliation(s)
- Anne S. Hansen
- Department of Chemistry
- University of Copenhagen
- DK-2100 Copenhagen Ø
- Denmark
| | - Zeina Maroun
- Department of Chemistry
- University of Copenhagen
- DK-2100 Copenhagen Ø
- Denmark
| | - Kasper Mackeprang
- Department of Chemistry
- University of Copenhagen
- DK-2100 Copenhagen Ø
- Denmark
| | | | | |
Collapse
|
21
|
Tang S, Zhao H, Du L. Hydrogen bonding in alcohol–ethylene oxide and alcohol–ethylene sulfide complexes. RSC Adv 2016. [DOI: 10.1039/c6ra16205c] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
The O–H⋯O and O–H⋯S hydrogen bonds are of similar strength in the corresponding alcohol–EO and alcohol–ES complexes.
Collapse
Affiliation(s)
- Shanshan Tang
- Environment Research Institute
- Shandong University
- China
| | - Hailiang Zhao
- Environment Research Institute
- Shandong University
- China
| | - Lin Du
- Environment Research Institute
- Shandong University
- China
| |
Collapse
|
22
|
Boda Ł, Boczar M, Gług M, Wójcik MJ. Quantum-mechanical study of energies, structures, and vibrational spectra of the H(D)Cl complexed with dimethyl ether. J Chem Phys 2015; 143:204302. [PMID: 26627954 DOI: 10.1063/1.4935805] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Interaction energies, molecular structure and vibrational frequencies of the binary complex formed between H(D)Cl and dimethyl ether have been obtained using quantum-chemical methods. Equilibrium and vibrationally averaged structures, harmonic and anharmonic wavenumbers of the complex and its deuterated isotopomer were calculated using harmonic and anharmonic second-order perturbation theory procedures with Density Functional Theory B3LYP and B2PLYP-D and ab initio Møller-Plesset second-order methods, and a 6-311++G(3d,3p) basis set. A phenomenological model describing anharmonic-type vibrational couplings within hydrogen bonds was developed to explain the unique broadening and fine structure, as well as the isotope effect of the Cl-H and Cl-D stretching IR absorption bands in the gaseous complexes with dimethyl ether, as an effect of hydrogen bond formation. Simulations of the rovibrational structure of the Cl-H and Cl-D stretching bands were performed and the results were compared with experimental spectra.
Collapse
Affiliation(s)
- Łukasz Boda
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland
| | - Marek Boczar
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland
| | - Maciej Gług
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland
| | - Marek J Wójcik
- Faculty of Chemistry, Jagiellonian University, Ingardena 3, 30-060 Kraków, Poland
| |
Collapse
|
23
|
Møller KH, Hansen AS, Kjaergaard HG. Gas Phase Detection of the NH-P Hydrogen Bond and Importance of Secondary Interactions. J Phys Chem A 2015; 119:10988-98. [PMID: 26451467 DOI: 10.1021/acs.jpca.5b08358] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We have observed the NH···P hydrogen bond in a gas phase complex. The bond is identified in the dimethylamine-trimethylphosphine complex by a red shift of the fundamental NH-stretching frequency observed using Fourier transform infrared spectroscopy (FT-IR). On the basis of the measured NH-stretching frequency red shifts, we find that P is a hydrogen bond acceptor atom similar in strength to S. Both are stronger acceptors than O and significantly weaker acceptors than N. The hydrogen bond angle, ∠NHP, is found to be very sensitive to the functional employed in density functional theory (DFT) optimizations of the complex and is a possible parameter to assess the quality of DFT functionals. Natural bonding orbital (NBO) energies and results from the topological methods atoms in molecules (AIM) and noncovalent interactions (NCI) indicate that the sensitivity is caused by the weakness of the hydrogen bond compared to secondary interactions. We find that B3LYP favors the hydrogen bond and M06-2X favors the secondary interactions leading to under- and overestimation, respectively, of the hydrogen bond angle relative to a DF-LCCSD(T)-F12a calculated angle. The remaining functionals tested, B3LYP-D3, B3LYP-D3BJ, CAM-B3LYP, and ωB97X-D, as well as MP2, show comparable contributions from the hydrogen bond and the secondary interactions and are close to DF-LCCSD(T)-F12a results.
Collapse
Affiliation(s)
- Kristian H Møller
- Department of Chemistry, University of Copenhagen , Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Anne S Hansen
- Department of Chemistry, University of Copenhagen , Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Henrik G Kjaergaard
- Department of Chemistry, University of Copenhagen , Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| |
Collapse
|
24
|
Mackeprang K, Hänninen V, Halonen L, Kjaergaard HG. The effect of large amplitude motions on the vibrational intensities in hydrogen bonded complexes. J Chem Phys 2015; 142:094304. [DOI: 10.1063/1.4913737] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
25
|
Rutkowski KS, Melikova SM, Linok OV, Czarnik-Matusewicz B, Rospenk M. Infrared spectroscopy and ab initio study of hydrogen bonded Cl3CD·N(CH3)3 complex in the gas phase. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2015; 136 Pt A:95-99. [PMID: 24263231 DOI: 10.1016/j.saa.2013.10.055] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2013] [Accepted: 10/09/2013] [Indexed: 06/02/2023]
Abstract
FTIR spectra of the gas phase Cl3CD+TMA mixture have been studied at room temperature in ∼800-4000 cm(-1) frequency domain. The formation of the H-bonded Cl3CD…TMA complex has been detected. Spectroscopic parameters of the band ascribed to the complex were evaluated. MP2 frozen core ab initio calculations have been carried out with the Pople-type 6-311++G(d,p) basis set. The equilibrium geometries and harmonic vibrational frequencies of the complex were obtained using CP-corrected gradient techniques. The ''freq=anharm'' option has been tested for Cl3CD monomer and Cl3CD…TMA complex to examine possible anharmonic effects on the vibrations localized on the proton donor. The effects of Darling-Dennison and Fermi resonances on the frequency of the stretching vibration of the CH proton donor were analyzed.
Collapse
Affiliation(s)
- K S Rutkowski
- Department of Physics, St. Petersburg State University, Ulianovskaja 3, 198504 St. Petersburg, Russia.
| | - S M Melikova
- Department of Physics, St. Petersburg State University, Ulianovskaja 3, 198504 St. Petersburg, Russia
| | - O V Linok
- Department of Physics, St. Petersburg State University, Ulianovskaja 3, 198504 St. Petersburg, Russia
| | - B Czarnik-Matusewicz
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, 50-383 Wroclaw, Poland
| | - M Rospenk
- Department of Chemistry, Wroclaw University, F. Joliot-Curie 14, 50-383 Wroclaw, Poland
| |
Collapse
|
26
|
Andersen CL, Jensen CS, Mackeprang K, Du L, Jørgensen S, Kjaergaard HG. Similar Strength of the NH···O and NH···S Hydrogen Bonds in Binary Complexes. J Phys Chem A 2014; 118:11074-82. [DOI: 10.1021/jp5086679] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Cecilie L. Andersen
- Department of Chemistry, University of Copenhagen, Universitetsparken
5, DK-2100 Copenhagen
Ø, Denmark
| | - Christine S. Jensen
- Department of Chemistry, University of Copenhagen, Universitetsparken
5, DK-2100 Copenhagen
Ø, Denmark
| | - Kasper Mackeprang
- Department of Chemistry, University of Copenhagen, Universitetsparken
5, DK-2100 Copenhagen
Ø, Denmark
| | - Lin Du
- Department of Chemistry, University of Copenhagen, Universitetsparken
5, DK-2100 Copenhagen
Ø, Denmark
| | - Solvejg Jørgensen
- Department of Chemistry, University of Copenhagen, Universitetsparken
5, DK-2100 Copenhagen
Ø, Denmark
| | - Henrik G. Kjaergaard
- Department of Chemistry, University of Copenhagen, Universitetsparken
5, DK-2100 Copenhagen
Ø, Denmark
| |
Collapse
|
27
|
|
28
|
Bork N, Du L, Reiman H, Kurtén T, Kjaergaard HG. Benchmarking ab initio binding energies of hydrogen-bonded molecular clusters based on FTIR spectroscopy. J Phys Chem A 2014; 118:5316-22. [PMID: 24988143 DOI: 10.1021/jp5037537] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Models of formation and growth of atmospheric aerosols are highly dependent on accurate cluster binding energies. These are most often calculated by ab initio electronic structure methods but remain associated with significant uncertainties. We present a computational benchmarking study of the Gibbs free binding energies in molecular complexes and clusters based on gas phase FTIR spectroscopy. The acetonitrile-HCl molecular complex is identified via its redshifted H-Cl stretching vibrational mode. We determine the Gibbs free binding energy, ΔG°295 K, to between 4.8 and 7.9 kJ mol(-1) and compare this range to predictions from several widely used electronic structure methods, including five density functionals, Møller-Plesset perturbation theory, and five coupled cluster methods up to CCSDT quality, considering also the D3 dispersion correctional scheme. With some exceptions, we find that most electronic structure methods overestimate ΔG°295 K. The effects of vibrational anharmonicity is approximated using scaling factors, reducing ΔG°295 K by ca. 1.8 kJ mol(-1), whereby ΔG°295 K predictions well within the experimental range can be obtained.
Collapse
Affiliation(s)
- Nicolai Bork
- Department of Chemistry, University of Copenhagen , Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | | | | | | | | |
Collapse
|
29
|
Mackeprang K, Kjaergaard HG, Salmi T, Hänninen V, Halonen L. The effect of large amplitude motions on the transition frequency redshift in hydrogen bonded complexes: A physical picture. J Chem Phys 2014; 140:184309. [DOI: 10.1063/1.4873420] [Citation(s) in RCA: 41] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
30
|
Bork N, Du L, Kjaergaard HG. Identification and Characterization of the HCl–DMS Gas Phase Molecular Complex via Infrared Spectroscopy and Electronic Structure Calculations. J Phys Chem A 2014; 118:1384-9. [DOI: 10.1021/jp411567x] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Nicolai Bork
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
- Department
of Physics, University of Helsinki, FI-00014 Helsinki, Finland
| | - Lin Du
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Henrik G. Kjaergaard
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| |
Collapse
|
31
|
Hansen AS, Du L, Kjaergaard HG. The effect of fluorine substitution in alcohol–amine complexes. Phys Chem Chem Phys 2014; 16:22882-91. [DOI: 10.1039/c4cp02500h] [Citation(s) in RCA: 55] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The effect of fluorine substitution on the hydrogen bond strength in alcohol–amine molecular complexes was investigated, with a combination of vapour phase infrared and near infrared spectroscopy and theoretical calculations.
Collapse
Affiliation(s)
- Anne S. Hansen
- Department of Chemistry
- University of Copenhagen
- Universitetsparken 5
- DK-2100 Copenhagen, Denmark
| | - Lin Du
- Department of Chemistry
- University of Copenhagen
- Universitetsparken 5
- DK-2100 Copenhagen, Denmark
| | - Henrik G. Kjaergaard
- Department of Chemistry
- University of Copenhagen
- Universitetsparken 5
- DK-2100 Copenhagen, Denmark
| |
Collapse
|
32
|
Bork N, Loukonen V, Kjaergaard HG, Vehkamäki H. Resolving the anomalous infrared spectrum of the MeCN–HCl molecular cluster using ab Initio molecular dynamics. Phys Chem Chem Phys 2014; 16:24685-90. [DOI: 10.1039/c4cp03828b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Molecular dynamics simulations reveal that the asymmetric peak seen in IR spectra of acetonitrile–HCl molecular complexes are due to high population of complexes with partially broken hydrogen bonds.
Collapse
Affiliation(s)
- Nicolai Bork
- Department of Physics
- University of Helsinki
- FI-00014 Helsinki, Finland
- Department of Chemistry
- University of Copenhagen
| | - Ville Loukonen
- Department of Physics
- University of Helsinki
- FI-00014 Helsinki, Finland
| | | | - Hanna Vehkamäki
- Department of Physics
- University of Helsinki
- FI-00014 Helsinki, Finland
| |
Collapse
|
33
|
Shirhatti PR, Maity DK, Bhattacharyya S, Wategaonkar S. CH⋅⋅⋅N Hydrogen-Bonding Interaction in 7-Azaindole:CHX3(X=F, Cl) Complexes. Chemphyschem 2013; 15:109-17. [DOI: 10.1002/cphc.201300731] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/07/2013] [Revised: 10/15/2013] [Indexed: 11/12/2022]
|
34
|
Sun C, Liu Y, Xu B, Zeng Y, Meng L, Zhang S. Theoretical study on reaction mechanism and kinetics of HNCS with CN. J Chem Phys 2013; 139:154307. [PMID: 24160513 DOI: 10.1063/1.4825080] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We presented a theoretical study on the detailed reaction mechanism and kinetics of the CN radical with the HNCS molecule. The barrierless minimum energy path and the most favorable entrance channel have been determined by constructing a two-dimensional potential energy surface of the C atom of CN attacking the HNCS molecule. The reaction of the C atom attacking the S atom was finally identified as the dominant entrance channel based on the rate constants' results calculated with the canonical variational transition state theory. The master equation method was employed to calculate the products' branching ratios, the overall rate constant, and the pressure dependence of the title reaction. The B3LYP∕6-311+G(2d,p) method was employed for all the geometrical optimizations and a multi-level extrapolation method based on the CCSD(T) and MP2(FC) energies was employed for further energy refinements.
Collapse
Affiliation(s)
- Cuihong Sun
- Key Laboratory of Cluster Science of Ministry of Education, School of Chemistry, Beijing Institute of Technology, Beijing 100081, People's Republic of China
| | | | | | | | | | | |
Collapse
|
35
|
Sahu PK, Srinivasadesikan V, Jhong ML, Lee SL. Model calculations for the base-pairing specificity of mutagenic exocyclic DNA adduct 1,N 6-ethenoadenine. Struct Chem 2013. [DOI: 10.1007/s11224-013-0318-x] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
|
36
|
Brovarets’ OO, Yurenko YP, Hovorun DM. Intermolecular CH···O/N H-bonds in the biologically important pairs of natural nucleobases: a thorough quantum-chemical study. J Biomol Struct Dyn 2013; 32:993-1022. [PMID: 23730732 DOI: 10.1080/07391102.2013.799439] [Citation(s) in RCA: 109] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
|
37
|
Du L, Mackeprang K, Kjaergaard HG. Fundamental and overtone vibrational spectroscopy, enthalpy of hydrogen bond formation and equilibrium constant determination of the methanol-dimethylamine complex. Phys Chem Chem Phys 2013; 15:10194-206. [PMID: 23695525 DOI: 10.1039/c3cp50243k] [Citation(s) in RCA: 59] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We have measured gas phase vibrational spectra of the bimolecular complex formed between methanol (MeOH) and dimethylamine (DMA) up to about 9800 cm(-1). In addition to the strong fundamental OH-stretching transition we have also detected the weak second overtone NH-stretching transition. The spectra of the complex are obtained by spectral subtraction of the monomer spectra from spectra recorded for the mixture. For comparison, we also measured the fundamental OH-stretching transition in the bimolecular complex between MeOH and trimethylamine (TMA). The enthalpies of hydrogen bond formation (ΔH) for the MeOH-DMA and MeOH-TMA complexes have been determined by measurements of the fundamental OH-stretching transition in the temperature range from 298 to 358 K. The enthalpy of formation is found to be -35.8 ± 3.9 and -38.2 ± 3.3 kJ mol(-1) for MeOH-DMA and MeOH-TMA, respectively, in the 298 to 358 K region. The equilibrium constant (Kp) for the formation of the MeOH-DMA complex has been determined from the measured and calculated transition intensities of the OH-stretching fundamental transition and the NH-stretching second overtone transition. The transition intensities were calculated using an anharmonic oscillator local mode model with dipole moment and potential energy curves calculated using explicitly correlated coupled cluster methods. The equilibrium constant for formation of the MeOH-DMA complex was determined to be 0.2 ± 0.1 atm(-1), corresponding to a ΔG value of about 4.0 kJ mol(-1).
Collapse
Affiliation(s)
- Lin Du
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | | | | |
Collapse
|
38
|
Shirhatti PR, Maity DK, Wategaonkar S. C–H···Y Hydrogen Bonds in the Complexes of p-Cresol and p-Cyanophenol with Fluoroform and Chloroform. J Phys Chem A 2013; 117:2307-16. [DOI: 10.1021/jp311596x] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Pranav R. Shirhatti
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400005,
India
| | - Dilip K. Maity
- Theoretical Chemistry
Section,
Chemistry Group, Bhabha Atomic Research Centre, Mumbai 400085, India
| | - Sanjay Wategaonkar
- Department of Chemical Sciences, Tata Institute of Fundamental Research, Mumbai 400005,
India
| |
Collapse
|
39
|
Du L, Lane JR, Kjaergaard HG. Identification of the dimethylamine-trimethylamine complex in the gas phase. J Chem Phys 2012; 136:184305. [PMID: 22583285 DOI: 10.1063/1.4707707] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We have identified the dimethylamine-trimethylamine complex (DMA-TMA) at room temperature in the gas phase. The Fourier transform infrared (FTIR) spectrum of DMA-TMA in the NH-stretching fundamental region was obtained by spectral subtraction of spectra of each monomer. Explicitly correlated coupled cluster calculations were used to determine the minimum energy structure and interaction energy of DMA-TMA. Frequencies and intensities of NH-stretching transitions were also calculated at this level of theory with an anharmonic oscillator local mode model. The fundamental NH-stretching intensity in DMA-TMA is calculated to be approximately 700 times larger than that of the DMA monomer. The measured and calculated intensity is used to determine a room temperature equilibrium constant of DMA-TMA of 1.7 × 10(-3) atm(-1) at 298 K.
Collapse
Affiliation(s)
- Lin Du
- Department of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | | | | |
Collapse
|
40
|
Ito F. Matrix-isolation infrared studies of 1:1 molecular complexes containing chloroform (CHCl3) and Lewis bases: Seamless transition from blue-shifted to red-shifted hydrogen bonds. J Chem Phys 2012; 137:014505. [DOI: 10.1063/1.4730909] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
|
41
|
Du L, Kjaergaard HG. Fourier transform infrared spectroscopy and theoretical study of dimethylamine dimer in the gas phase. J Phys Chem A 2011; 115:12097-104. [PMID: 21950960 DOI: 10.1021/jp206762j] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Dimethylamine (DMA) has been studied by gas-phase Fourier transform infrared (FTIR) spectroscopy. We have identified a spectral transition that is assigned to the DMA dimer. The IR spectra of the dimer in the gas phase are obtained by spectral subtraction of spectra recorded at different pressures. The enthalpy of hydrogen bond formation was obtained for the DMA dimer by temperature-dependence measurements. We complement the experimental results with ab initio and anharmonic local mode model calculations of monomer and dimer. Compared to the monomer, our calculations show that in the dimer the N-H bond is elongated, and the NH-stretching fundamental shifts to a lower wavenumber. More importantly, the weak NH-stretching fundamental transition has a pronounced intensity increase upon complexation. However, the first NH-stretching overtone transition is not favored by the same intensity enhancement, and we do not observe the first NH-stretching overtone of the dimer. On the basis of the measured and calculated intensity of the NH-stretching transition of the dimer, the equilibrium constant for dimerization at room temperature was determined.
Collapse
Affiliation(s)
- Lin Du
- Department of Chemistry, University of Copenhagen, Copenhagen Ø, Denmark
| | | |
Collapse
|
42
|
Rutkowski KS, Melikova SM, Rospenk M, Koll A. Strong and weak effects caused by non covalent interactions between chloroform and selected electron donor molecules. Phys Chem Chem Phys 2011; 13:14223-34. [DOI: 10.1039/c1cp20727j] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
43
|
Madebène B, Asselin P, Soulard P, Alikhani ME. Axial and equatorial hydrogen-bond conformers between (CH2)3S and H(D)F: Fourier transform infrared spectroscopy and ab initio calculations. Phys Chem Chem Phys 2011; 13:14202-14. [DOI: 10.1039/c1cp20668k] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- B Madebène
- UPMC Univ. Paris 06, UMR 7075, Laboratoire de Dynamique, Interactions et Réactivité (LADIR), F-75005, Paris, France
| | | | | | | |
Collapse
|
44
|
Keller JW, Harrod BL, Chowdhury SA. Theoretical study of formic acid-sulfur dioxide dimers. J Phys Chem A 2010; 114:13182-8. [PMID: 21117658 DOI: 10.1021/jp1076214] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
We report the first theoretical study of noncovalent and covalent interactions in formic acid (FA)-SO(2) complexes. Using ab initio and DFT model chemistries, five stable noncovalent complexes were identified, as well as a covalent adduct, formic sulfurous anhydride HOSO(2)CHO. syn-FA is predicted to form two nonplanar bidentate complexes with SO(2): the more stable one contains a normal hydrogen bond donated by OH, and the less stable one contains a blue-shifted hydrogen bond donated by CH. Both are stabilized by charge transfer from FA to SO(2). anti-FA forms three planar complexes of nearly equal energy containing OH-to-SO(2) hydrogen bonds. Formic sulfurous anhydride forms via an endothermic concerted cycloaddition. Natural bond orbital analysis showed that the bidentate SO(2)-FA complexes are stabilized by n → π* donation from FA to SO(2), and back-donation from SO(2) n and π* orbitals into FA σ(OH)* or σ(CH)* orbitals. The bidentate formic acid-SO(2) complex that contains an O-H···O hydrogen bond is more stable than the similar nitric acid-SO(2) complex. The latter contains a stronger hydrogen bond but shows no O→S charge transfer interaction.
Collapse
Affiliation(s)
- John W Keller
- Department of Chemistry and Biochemistry, University of Alaska Fairbanks, 900 Yukon Drive, Fairbanks, Alaska 99775-6160, United States.
| | | | | |
Collapse
|
45
|
Hippler M, Mohr C, Keen KA, McNaghten ED. Cavity-enhanced resonant photoacoustic spectroscopy with optical feedback cw diode lasers: A novel technique for ultratrace gas analysis and high-resolution spectroscopy. J Chem Phys 2010; 133:044308. [PMID: 20687651 DOI: 10.1063/1.3461061] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Cavity-enhanced resonant photoacoustic spectroscopy with optical feedback cw diode lasers (OF-CERPAS) is introduced as a novel technique for ultratrace gas analysis and high-resolution spectroscopy. In the scheme, a single-mode cw diode laser (3 mW, 635 nm) is coupled into a high-finesse linear cavity and stabilized to the cavity by optical feedback. Inside the cavity, a build-up of laser power to at least 2.5 W occurs. Absorbing gas phase species inside the cavity are detected with high sensitivity by the photoacoustic effect using a microphone embedded in the cavity. To increase sensitivity further, coupling into the cavity is modulated at a frequency corresponding to a longitudinal resonance of an organ pipe acoustic resonator (f=1.35 kHz and Q approximately 10). The technique has been characterized by measuring very weak water overtone transitions near 635 nm. Normalized noise-equivalent absorption coefficients are determined as alpha approximately 4.4x10(-9) cm(-1) s(1/2) (1 s integration time) and 2.6x10(-11) cm(-1) s(1/2) W (1 s integration time and 1 W laser power). These sensitivities compare favorably with existing state-of-the-art techniques. As an advantage, OF-CERPAS is a "zero-background" method which increases selectivity and sensitivity, and its sensitivity scales with laser power.
Collapse
Affiliation(s)
- Michael Hippler
- Department of Chemistry, University of Sheffield, Sheffield S3 7HF, United Kingdom.
| | | | | | | |
Collapse
|
46
|
Hippler M, Hesse S, Suhm MA. Quantum-chemical study and FTIR jet spectroscopy of CHCl3–NH3 association in the gas phase. Phys Chem Chem Phys 2010; 12:13555-65. [DOI: 10.1039/c0cp00530d] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
47
|
Michielsen B, Dom JJJ, Veken BJVD, Hesse S, Xue Z, Suhm MA, Herrebout WA. The complexes of halothane with benzene: the temperature dependent direction of the complexation shift of the aliphatic C–H stretching. Phys Chem Chem Phys 2010; 12:14034-44. [DOI: 10.1039/c0cp00771d] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
|
48
|
Scheiner S. Identification of spectroscopic patterns of CH...O H-bonds in proteins. J Phys Chem B 2009; 113:10421-7. [PMID: 19575539 DOI: 10.1021/jp9035138] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Abstract
Ab initio calculations are used to identify characteristics of vibrational and NMR spectra that signal the involvement of a protein backbone in a CH...O H-bond and that distinguish this sort of interaction from other H-bonds in which a protein might participate. Glycine and alanine dipeptides, in both their C7 and C5 minimum-energy structures, are paired with formamide in a number of different H-bonding arrangements. The CH...O H-bond is characterized by a small contraction of the C-H bond length, along with a blue shift in its stretching frequency, accompanied by an intensification of this vibrational band. In the context of NMR spectra, the bridging CH proton's chemical shift is moved downfield by 1-2 ppm. The aforementioned features are not produced by other H-bonds in which the protein backbone might participate, such as NH proton donation or accepting a proton via the peptide C=O.
Collapse
Affiliation(s)
- Steve Scheiner
- Department of Chemistry & Biochemistry, Utah State University, Logan, Utah 84322-0300, USA.
| |
Collapse
|
49
|
Trung NT, Hue TT, Nguyen MT. Interaction of CHX3(X = F, Cl, Br) with HNO induces remarkable blue shifts of both C–H and N–H bonds. Phys Chem Chem Phys 2009; 11:926-33. [DOI: 10.1039/b816112g] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
|
50
|
Rutkowski KS, Karpfen A, Melikova SM, Herrebout WA, Koll A, Wolschann P, van der Veken BJ. Cryospectroscopic and ab initio studies of haloform–trimethylamine H-bonded complexes. Phys Chem Chem Phys 2009; 11:1551-63. [PMID: 19240932 DOI: 10.1039/b815554b] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Affiliation(s)
- Konstantin S Rutkowski
- Department of Physics, St. Petersburg University, Uljanovskaja 1, 198504, St. Petersburg, Russian Federation.
| | | | | | | | | | | | | |
Collapse
|