Symbolic synchronization and the detection of global properties of coupled dynamics from local information

Complexity measures, emergence, and multiparticle correlations

We study correlation measures for complex systems. First, we investigate some recently proposed measures based on information geometry. We show that these measures can increase under local transformations as well as under discarding particles, thereby questioning their interpretation as a quantifier for complexity or correlations. We then propose a refined definition of these measures, investigate its properties, and discuss its numerical evaluation. As an example, we study coupled logistic maps and study the behavior of the different measures for that case. Finally, we investigate other local effects during the coarse graining of the complex system.

Bayesian design strategies for synthetic biology

We discuss how statistical inference techniques can be applied in the context of designing novel biological systems. Bayesian techniques have found widespread application and acceptance in the systems biology community, where they are used for both parameter estimation and model selection. Here we show that the same approaches can also be used in order to engineer synthetic biological systems by inferring the structure and parameters that are most likely to give rise to the dynamics that we require a system to exhibit. Problems that are shared between applications in systems and synthetic biology include the vast potential spaces that need to be searched for suitable models and model parameters; the complex forms of likelihood functions; and the interplay between noise at the molecular level and nonlinearity in the dynamics owing to often complex feedback structures. In order to meet these challenges, we have to develop suitable inferential tools and here, in particular, we illustrate the use of approximate Bayesian computation and unscented Kalman filtering-based approaches. These partly complementary methods allow us to tackle a number of recurring problems in the design of biological systems. After a brief exposition of these two methodologies, we focus on their application to oscillatory systems.

Language organization and temporal correlations in the spiking activity of an excitable laser: experiments and model comparison

We introduce a method, based on symbolic analysis, to characterize the temporal correlations of the spiking activity exhibited by excitable systems. The technique is applied to the experimentally observed dynamics of a semiconductor laser with optical feedback operating in the low-frequency fluctuations regime, where the laser intensity displays irregular trains of sudden dropouts that can be interpreted as excitable pulses. Symbolic analysis transforms the series of interdropout time intervals into sequences of words, which represent the local ordering of a certain (small) number of those intervals. We then focus on the transition probabilities between pairs of words, showing that certain transitions are overrepresented (resulting in others being underrepresented) with respect to the surrogate series, provided the laser injection current is above a critical value. These experimental observations are in very good agreement with numerical simulations of the delay-differential Lang-Kobayashi model that is commonly used to describe this laser system, which supports the fact that the language organization reported here is generic and not a particular feature of the specific laser employed or the experimental time series analyzed. We also present results of simulations of the phenomenological nondelayed Eguia-Mindlin-Giudici(EMG) model and find that in this model the agreement between the experiments and the simulations is good at a qualitative, but not at a quantitative, level.

Complexity measures from interaction structures

We evaluate information-theoretic quantities that quantify complexity in terms of kth-order statistical dependences that cannot be reduced to interactions among k-1 random variables. Using symbolic dynamics of coupled maps and cellular automata as model systems, we demonstrate that these measures are able to identify complex dynamical regimes.

Deconstructing spatiotemporal chaos using local symbolic dynamics

We find that the global symbolic dynamics of a diffusively coupled map lattice is well approximated by a very small local model for weak to moderate coupling strengths. A local symbolic model is a truncation of the full symbolic model to one that considers only a single element and a few neighbors. Using interval analysis, we give rigorous results for a range of coupling strengths and different local model widths. Examples are presented of extracting a local symbolic model from data and of controlling spatiotemporal chaos.