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Xie W, Xu M, Bai S, Shi Q. Mixed Quantum-Classical Study of Nonadiabatic Curve Crossing in Condensed Phases. J Phys Chem A 2016; 120:3225-32. [DOI: 10.1021/acs.jpca.5b11695] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Weiwei Xie
- Beijing
National Laboratory
for Molecular Sciences, State Key Laboratory for Structural Chemistry
of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China
| | - Meng Xu
- Beijing
National Laboratory
for Molecular Sciences, State Key Laboratory for Structural Chemistry
of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China
| | - Shuming Bai
- Beijing
National Laboratory
for Molecular Sciences, State Key Laboratory for Structural Chemistry
of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China
| | - Qiang Shi
- Beijing
National Laboratory
for Molecular Sciences, State Key Laboratory for Structural Chemistry
of Unstable and Stable Species, Institute of Chemistry, Chinese Academy of Sciences, Zhongguancun, Beijing 100190, China
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Kapral R. Quantum dynamics in open quantum-classical systems. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2015; 27:073201. [PMID: 25634784 DOI: 10.1088/0953-8984/27/7/073201] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Often quantum systems are not isolated and interactions with their environments must be taken into account. In such open quantum systems these environmental interactions can lead to decoherence and dissipation, which have a marked influence on the properties of the quantum system. In many instances the environment is well-approximated by classical mechanics, so that one is led to consider the dynamics of open quantum-classical systems. Since a full quantum dynamical description of large many-body systems is not currently feasible, mixed quantum-classical methods can provide accurate and computationally tractable ways to follow the dynamics of both the system and its environment. This review focuses on quantum-classical Liouville dynamics, one of several quantum-classical descriptions, and discusses the problems that arise when one attempts to combine quantum and classical mechanics, coherence and decoherence in quantum-classical systems, nonadiabatic dynamics, surface-hopping and mean-field theories and their relation to quantum-classical Liouville dynamics, as well as methods for simulating the dynamics.
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Affiliation(s)
- Raymond Kapral
- Department of Chemistry, Chemical Physics Theory Group, University of Toronto, Toronto, ON, M5S 3H6 Canada
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Martinez F, Hanna G. Assessment of approximate solutions of the quantum–classical Liouville equation for dynamics simulations of quantum subsystems embedded in classical environments. MOLECULAR SIMULATION 2014. [DOI: 10.1080/08927022.2014.923573] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Tomkins J, Hanna G. Signatures of nanoconfinement on the linear and nonlinear vibrational spectroscopy of a model hydrogen-bonded complex dissolved in a polar solvent. J Phys Chem B 2013; 117:13619-30. [PMID: 24079369 DOI: 10.1021/jp407469f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The one-dimensional IR (1D-IR) absorption and IR pump-probe spectra of a hydrogen stretch in a model hydrogen-bonded complex dissolved in a polar solvent confined in spherical hydrophobic cavities of different sizes were simulated using ground-state mixed quantum-classical dynamics. Due to a thorough analysis of key properties of the complex and solvent from equilibrium trajectory data, we were able to gain insight into the microscopic details underlying the spectra. Both the 1D-IR and IR pump-probe spectra manifested the effects of confinement on the relative stabilities of the covalent and ionic forms of the complex through pronounced changes in their peak intensities and numbers. However, in contrast to the 1D-IR spectra, the time-resolved pump-probe spectra were found to be uniquely sensitive to the changes in the molecular dynamics as the cavity size is varied. In particular, it was found that the variations in the time evolutions of the peak intensities in the pump-probe spectra reflect the differences in the solvation dynamics associated with the various forms of the complex in different locations within the cavities. The ability to detect these differences underscores the advantage of using pump-probe spectroscopy for studying nanoconfined systems.
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Affiliation(s)
- Joseph Tomkins
- Department of Chemistry, University of Alberta , Edmonton, Alberta, Canada T6G 2G2
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Lengyel J, Gorejová R, Herman Z, Fárník M. Proton Transfer in Hydrogen-Bonded Network of Phenol Molecules: Intracluster Formation of Water. J Phys Chem A 2013; 117:11225-32. [DOI: 10.1021/jp406773s] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Jozef Lengyel
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 18223 Prague, Czech Republic
| | - Radka Gorejová
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 18223 Prague, Czech Republic
| | - Zdeněk Herman
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 18223 Prague, Czech Republic
| | - Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, v.v.i., Academy of Sciences of the Czech Republic, Dolejškova 3, 18223 Prague, Czech Republic
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Sow CS, Tomkins J, Hanna G. Computational study of the one- and two-dimensional infrared spectra of a proton-transfer mode in a hydrogen-bonded complex dissolved in a polar nanocluster. Chemphyschem 2013; 14:3309-18. [PMID: 23946271 DOI: 10.1002/cphc.201300610] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2013] [Indexed: 11/07/2022]
Abstract
The signatures of nanosolvation on the one- and two-dimensional (1D and 2D) IR spectra of a proton-transfer mode in a hydrogen-bonded complex dissolved in polar solvent molecule nanoclusters of varying size are elucidated by using mixed quantum-classical molecular dynamics simulations. For this particular system, increasing the number of solvent molecules successively from N=7 to N=9 initiates the transition of the system from a cluster state to a bulk-like state. Both the 1D and 2D IR spectra reflect this transition through pronounced changes in their peak intensities and numbers, but the time-resolved 2D IR spectra also manifest spectral features that uniquely identify the onset of the cluster-to-bulk transition. In particular, it is observed that in the 1D IR spectra, the relative intensities of the peaks change such that the number of peaks decreases from three to two as the size of the cluster increases from N=7 to N=9. In the 2D IR spectra, off-diagonal peaks are observed in the N=7 and N=8 cases at zero waiting time, but not in the N=9 case. It is known that there are no off-diagonal peaks in the 2D IR spectrum of the bulk version of this system at zero waiting time, so the disappearance of these peaks is a unique signature of the onset of bulk-like behavior. Through an examination of the trajectories of various properties of the complex and solvent, it is possible to relate the emergence of these off-diagonal peaks to an interplay between the vibrations of the complex and the solvent polarization dynamics.
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Affiliation(s)
- Chia Shen Sow
- Department of Chemistry, University of Alberta, Edmonton, AB T6G 2G2 (Canada)
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Reigh SY, Kim HJ. Direct Calculation Method for Excited-state Diffusion-influenced Reversible Reactions with an External Field. B KOREAN CHEM SOC 2012. [DOI: 10.5012/bkcs.2012.33.3.1015] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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Hughes KH, Baxter SN, Bousquet D, Ramanathan P, Burghardt I. Extended hydrodynamic approach to quantum-classical nonequilibrium evolution. II. Application to nonpolar solvation. J Chem Phys 2012; 136:014102. [DOI: 10.1063/1.3671378] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Kim H, Nassimi A, Kapral R. Quantum-classical Liouville dynamics in the mapping basis. J Chem Phys 2008; 129:084102. [DOI: 10.1063/1.2971041] [Citation(s) in RCA: 110] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Kim H, Kapral R. Proton and Deuteron Transfer Reactions in Molecular Nanoclusters. Chemphyschem 2008; 9:470-4. [DOI: 10.1002/cphc.200700709] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
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Mac Kernan D, Ciccotti G, Kapral R. Trotter-Based Simulation of Quantum-Classical Dynamics. J Phys Chem B 2007; 112:424-32. [DOI: 10.1021/jp0761416] [Citation(s) in RCA: 92] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Dónal Mac Kernan
- School of Physics, Trinity College Dublin, Dublin 2 and School of Physics, University College Dublin, Dublin 4, Ireland, INFM and Dipartimento di Fisica, Università “La Sapienza”, Piazzale Aldo Moro, 2, 00185 Roma, Italy, and Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada
| | - Giovanni Ciccotti
- School of Physics, Trinity College Dublin, Dublin 2 and School of Physics, University College Dublin, Dublin 4, Ireland, INFM and Dipartimento di Fisica, Università “La Sapienza”, Piazzale Aldo Moro, 2, 00185 Roma, Italy, and Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada
| | - Raymond Kapral
- School of Physics, Trinity College Dublin, Dublin 2 and School of Physics, University College Dublin, Dublin 4, Ireland, INFM and Dipartimento di Fisica, Università “La Sapienza”, Piazzale Aldo Moro, 2, 00185 Roma, Italy, and Chemical Physics Theory Group, Department of Chemistry, University of Toronto, Toronto, ON M5S 3H6, Canada
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Kim H, Kapral R. Quantum reaction rates and sampling of quantum equilibrium structure. J Chem Phys 2007; 127:226101. [DOI: 10.1063/1.2805071] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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