1
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Barclay AJ, McKellar ARW, Pietropolli Charmet A, Moazzen-Ahmadi N. Water-carbon disulfide dimers: observation of a new isomer and ab initio structure theory. Phys Chem Chem Phys 2024; 26:23053-23061. [PMID: 39172124 DOI: 10.1039/d4cp02281e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/23/2024]
Abstract
The weakly bound dimer water-carbon disulfide is studied by ab initio structure theory and high-resolution infrared spectroscopy. The calculations yield three stable minima in the potential energy surface, all planar. The most stable, isomer 1, was observed previously by microwave spectroscopy. It has C2v symmetry, an S-O bond, and a linear O-S-C-S backbone. Isomer 2, the next most stable, has not been considered previously by theory or experiment. It also has C2v symmetry, but with a side-by-side structure. Isomer 3, which is slightly less stable, is side-by-side with one O-H bond pointing toward an S atom. The first gas phase water-CS2 infrared spectra are reported. For isomer 1, H2O-, HDO-, and D2O-CS2 are observed in the CS2ν1 + ν3 region, H2O-CS2 in the H2O ν2 bend region, and D2O-CS2 in the D2O ν1 and ν3 stretch regions. The latter ν3 spectrum enables an experimental determination of the A rotational parameter, which turns out to be larger than expected. The new isomer 2 is observed by means of a band in the H2O ν2 region, confirming its C2v symmetry and calculated structure.
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Affiliation(s)
- A J Barclay
- Department of Physics and Astronomy, University of Calgary, 2500 University Drive North West, Calgary, Alberta T2N 1N4, Canada.
| | - A R W McKellar
- National Research Council of Canada, Ottawa, Ontario K1A 0R6, Canada
| | - A Pietropolli Charmet
- Dipartimento di Scienze Molecolari e Nanosistemi, Università Ca' Foscari Venezia, Via Torino 155, I-30172, Mestre, Venezia, Italy
| | - N Moazzen-Ahmadi
- Department of Physics and Astronomy, University of Calgary, 2500 University Drive North West, Calgary, Alberta T2N 1N4, Canada.
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2
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Mondal S. Charge-Shifted Weak Noncovalent Interactions in the Atmospherically Important OCS Microhydrates. J Phys Chem A 2023; 127:3293-3304. [PMID: 36943720 DOI: 10.1021/acs.jpca.2c07670] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
Abstract
Stratospheric aerosol, mainly comprising microhydrated carbonyl sulfide (OCS), is among the primary drivers of climate change. In this study, we investigate the effect of microhydration on the structure, energetics, and vibrational properties of the neutral OCS molecule using ab initio calculation, molecular electrostatic potential (MESP), topological analyses of electron density, and natural bond orbital (NBO) analyses. The complexation energy increases with the cluster size, and the first solvation shell of OCS consists of four water molecules that interact with the OCS moiety preferentially through SOCS···OW, OOCS···OW, and COCS···OW type of weak noncovalent interaction instead of the typical OOCS···H-OW and SOCS···H-OW H-bonds. These noncovalent interactions originate due to the electron shift from the water oxygen lone pair to the antibonding orbital of C═S [BD*(C═S)], sometimes via BD*(C═O), which substantially perturbs the bending mode of surrounding water molecules. The present study thus unravels the underlying relationship between the OCS atmospheric hydrolysis and the charge-shifted noncovalent interactions.
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Affiliation(s)
- Saptarsi Mondal
- School of Chemical Sciences, Indian Association for the Cultivation of Sciences, Kolkata 700032, India
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3
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Soulard P, Tremblay B. Vibrational study of the CS2H2O, CS2-(H2O)2, and (CS2)2H2O complexes isolated in solid neon. Highlighting the existence of two isomers for CS2H2O. J Mol Struct 2021. [DOI: 10.1016/j.molstruc.2021.130800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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4
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Ball BT, Vanovac S, Odbadrakh TT, Shields GC. Monomers of Glycine and Serine Have a Limited Ability to Hydrate in the Atmosphere. J Phys Chem A 2021; 125:8454-8467. [PMID: 34529444 DOI: 10.1021/acs.jpca.1c05466] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The role of atmospheric aerosols on climate change is one of the biggest uncertainties in most global climate models. Organic aerosols have been identified as potential cloud condensation nuclei (CCN), and amino acids are organic molecules that could serve as CCN. Amino acids make up a significant portion of the total organic material in the atmosphere, and herein we present a systematic study of hydration for two of the most common atmospheric amino acids, glycine and serine. We compute DLPNO/CCSD(T)//M08-HX/MG3S thermodynamic properties and atmospheric concentrations of Gly(H2O)n and Ser(H2O)n, where n = 1-5. We predict that serine-water clusters have higher concentrations at n = 1 and 5, while glycine-water clusters have higher concentrations at n = 2-4. However, both glycine and serine are inferred to exist primarily in their nonhydrated monomer forms in the absence of other species such as sulfuric acid.
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Affiliation(s)
- Benjamin T Ball
- Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
| | - Sara Vanovac
- Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
| | - Tuguldur T Odbadrakh
- Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
| | - George C Shields
- Department of Chemistry, Furman University, Greenville, South Carolina 29613, United States
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5
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Mihrin D, Wugt Larsen R. THz spectroscopy of weakly bound cluster molecules in solid para-hydrogen: a sensitive probe of van der Waals interactions. Phys Chem Chem Phys 2018; 21:349-358. [PMID: 30525164 DOI: 10.1039/c8cp05060k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The present work demonstrates that 99.9% enriched solid para-H2 below 3 K provides an excellent inert and transparent medium for the exploration of large-amplitude intermolecular vibrational motion of weakly bound van der Waals cluster molecules in the THz spectral region. THz absorption spectra have been generated for CO2/H2O and CS2/H2O mixtures embedded in enriched solid para-H2 and numerous observed transitions associated with large-amplitude librational motion of the weakly bound binary CO2H2O and CS2H2O van der Waals cluster molecules have been assigned together with tentative assignments for the ternary CS2(H2O)2 system. The interaction strength, directionality and anharmonicity of the weak van der Waals "bonds" between the molecules can be characterized via these THz spectral signatures and yield rigorous benchmarks for high-level ab initio methodologies. It is suggested that even a less stable linear conformation of the ternary CS2(H2O)2 system, where one H2O molecule is linked to each S atom of the CS2 subunit, may be formed due to the kinetics associated with the mobility of free H2O molecules in the soft para-H2 medium. In addition, the spectroscopic observations confirm a linear and planar global intermolecular potential energy minimum for the binary CS2H2O system with C2v symmetry, where the O atom on the H2O molecule is linked to one of the S atoms on the CS2 subunit. A semi-experimental value for the vibrational zero-point energy contribution of 1.93 ± 0.10 kJ mol-1 from the class of large-amplitude intermolecular vibrational modes is proposed. The combination with CCSD(T)/CBS electronic energy predictions provides a semi-experimental estimate of 5.08 ± 0.15 kJ mol-1 for the binding energy D0 of the CS2H2O van der Waals system.
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Affiliation(s)
- D Mihrin
- Department of Chemistry, Technical University of Denmark, Kemitorvet 206, 2800 Kgs. Lyngby, Denmark.
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6
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Zhu YP, Liu YR, Huang T, Jiang S, Xu KM, Wen H, Zhang WJ, Huang W. Theoretical Study of the Hydration of Atmospheric Nucleation Precursors with Acetic Acid. J Phys Chem A 2014; 118:7959-74. [DOI: 10.1021/jp506226z] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yu-Peng Zhu
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Yi-Rong Liu
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Teng Huang
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Shuai Jiang
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Kang-Ming Xu
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Hui Wen
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei, Anhui 230031, China
| | - Wei-Jun Zhang
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei, Anhui 230031, China
- School of Environmental Science & Optoelectronic Technology, University of Science and Technology of China, Hefei, Anhui 230026, China
| | - Wei Huang
- Laboratory of Atmospheric Physico-Chemistry, Anhui Institute of Optics & Fine Mechanics, Chinese Academy of Sciences, Hefei, Anhui 230031, China
- School of Environmental Science & Optoelectronic Technology, University of Science and Technology of China, Hefei, Anhui 230026, China
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7
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Bustos DJ, Temelso B, Shields GC. Hydration of the Sulfuric Acid–Methylamine Complex and Implications for Aerosol Formation. J Phys Chem A 2014; 118:7430-41. [DOI: 10.1021/jp500015t] [Citation(s) in RCA: 47] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- Danielle J. Bustos
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
| | - Berhane Temelso
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
| | - George C. Shields
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
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8
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Temelso B, Alser KA, Gauthier A, Palmer AK, Shields GC. Structural Analysis of α-Fetoprotein (AFP)-like Peptides with Anti-Breast-Cancer Properties. J Phys Chem B 2014; 118:4514-26. [DOI: 10.1021/jp500017b] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Berhane Temelso
- Dean’s
Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
- Dean’s Office, College of Science and Technology, and Department of Chemistry & Physics, Armstrong Atlantic State University, 11935 Abercorn Street, Savannah, Georgia 31419, United States
| | - Katherine A. Alser
- Dean’s
Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
| | - Arianne Gauthier
- Dean’s Office, College of Science and Technology, and Department of Chemistry & Physics, Armstrong Atlantic State University, 11935 Abercorn Street, Savannah, Georgia 31419, United States
| | - Amber Kay Palmer
- Dean’s Office, College of Science and Technology, and Department of Chemistry & Physics, Armstrong Atlantic State University, 11935 Abercorn Street, Savannah, Georgia 31419, United States
| | - George C. Shields
- Dean’s
Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, United States
- Dean’s Office, College of Science and Technology, and Department of Chemistry & Physics, Armstrong Atlantic State University, 11935 Abercorn Street, Savannah, Georgia 31419, United States
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9
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Jia C, Wang W, Zhang T, Gao L, Fu F, Wang D. Impact of Water Molecules on the Isomerization of CH 3S(OH)CH 2to CH 3S(O)CH 3: A Computational Investigation. CHINESE J CHEM 2013. [DOI: 10.1002/cjoc.201300410] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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10
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Structure and thermodynamics of H3O+(H2O)8 clusters: A combined molecular dynamics and quantum mechanics approach. COMPUT THEOR CHEM 2013. [DOI: 10.1016/j.comptc.2013.07.039] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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11
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Temelso B, Phan TN, Shields GC. Computational Study of the Hydration of Sulfuric Acid Dimers: Implications for Acid Dissociation and Aerosol Formation. J Phys Chem A 2012; 116:9745-58. [DOI: 10.1021/jp3054394] [Citation(s) in RCA: 78] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Berhane Temelso
- Dean’s Office, College of Arts and Sciences,
and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837,
United States
| | - Thuong Ngoc Phan
- Dean’s Office, College of Arts and Sciences,
and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837,
United States
| | - George C. Shields
- Dean’s Office, College of Arts and Sciences,
and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837,
United States
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12
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Temelso B, Morrell TE, Shields RM, Allodi MA, Wood EK, Kirschner KN, Castonguay TC, Archer KA, Shields GC. Quantum Mechanical Study of Sulfuric Acid Hydration: Atmospheric Implications. J Phys Chem A 2012; 116:2209-24. [DOI: 10.1021/jp2119026] [Citation(s) in RCA: 98] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Berhane Temelso
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania
17837, United States
| | - Thomas E. Morrell
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania
17837, United States
| | - Robert M. Shields
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania
17837, United States
| | - Marco A. Allodi
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania
17837, United States
| | - Elena K. Wood
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania
17837, United States
| | - Karl N. Kirschner
- Department of Simulation
Engineering, Fraunhofer-Institute for Algorithms and Scientific Computing (SCAI), Schloss Birlinghoven,
53754 Sankt Augustin, Germany
| | - Thomas C. Castonguay
- Department of Chemistry, Iona College, New Rochelle, New York
10801, United States
| | - Kaye A. Archer
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania
17837, United States
| | - George C. Shields
- Dean’s Office, College
of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania
17837, United States
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13
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Shields RM, Temelso B, Archer KA, Morrell TE, Shields GC. Accurate predictions of water cluster formation, (H₂O)(n=2-10). J Phys Chem A 2011; 114:11725-37. [PMID: 20882961 DOI: 10.1021/jp104865w] [Citation(s) in RCA: 161] [Impact Index Per Article: 12.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
An efficient mixed molecular dynamics/quantum mechanics model has been applied to the water cluster system. The use of the MP2 method and correlation consistent basis sets, with appropriate correction for BSSE, allows for the accurate calculation of electronic and free energies for the formation of clusters of 2-10 water molecules. This approach reveals new low energy conformers for (H(2)O)(n=7,9,10). The water heptamer conformers comprise five different structural motifs ranging from a three-dimensional prism to a quasi-planar book structure. A prism-like structure is favored energetically at low temperatures, but a chair-like structure is the global Gibbs free energy minimum past 200 K. The water nonamers exhibit less complexity with all the low energy structures shaped like a prism. The decamer has 30 conformers that are within 2 kcal/mol of the Gibbs free energy minimum structure at 298 K. These structures are categorized into four conformer classes, and a pentagonal prism is the most stable structure from 0 to 320 K. Results can be used as benchmark values for empirical water models and density functionals, and the method can be applied to larger water clusters.
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Affiliation(s)
- Robert M Shields
- Dean's Office, College of Arts and Sciences, and Department of Chemistry, Bucknell University, Lewisburg, Pennsylvania 17837, USA
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14
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Morrell TE, Shields GC. Atmospheric implications for formation of clusters of ammonium and 1-10 water molecules. J Phys Chem A 2010; 114:4266-71. [PMID: 20218589 DOI: 10.1021/jp911493b] [Citation(s) in RCA: 37] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
A mixed molecular dynamics/quantum mechanics model has been applied to the ammonium/water clustering system. The use of the high level MP2 calculation method and correlated basis sets, such as aug-cc-pVDZ and aug-cc-pVTZ, lends confidence in the accuracy of the extrapolated energies. These calculations provide electronic and free energies for the formation of clusters of ammonium and 1-10 water molecules at two different temperatures. Structures and thermodynamic values are in good agreement with previous experimental and theoretical results. The estimated concentration of these clusters in the troposphere was calculated using atmospheric amounts of ammonium and water. Results show the favorability of forming these clusters and implications for ion-induced nucleation in the atmosphere.
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Affiliation(s)
- Thomas E Morrell
- Dean's Office and Department of Chemistry & Physics, College of Science and Technology, Armstrong Atlantic State University, 11935 Abercorn Street, Savannah, Georgia 31419, USA
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15
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Deng C, Wu XP, Sun XM, Ren Y, Sheng YH. Neutral hydrolyses of carbon disulfide: Anab initiostudy of water catalysis. J Comput Chem 2009; 30:285-94. [PMID: 18613069 DOI: 10.1002/jcc.21058] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Chao Deng
- Key Laboratory of Green Chemistry and Technology, Ministry of Education, College of Chemistry, Sichuan University, Chengdu 610064, People's Republic of China
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16
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Bravo-Pérez G, Cruz-Torres A, Romero-Martínez A. Electronic Structure, Molecular Interaction, and Stability of the CH4−nH2O Complex, for n = 1−21. J Phys Chem A 2008; 112:8737-51. [DOI: 10.1021/jp7106268] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Graciela Bravo-Pérez
- Programa de Ingeniería Molecular, Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas 152, 07730 México D. F., Mexico
| | - Armando Cruz-Torres
- Programa de Ingeniería Molecular, Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas 152, 07730 México D. F., Mexico
| | - Ascención Romero-Martínez
- Programa de Ingeniería Molecular, Instituto Mexicano del Petróleo, Eje Central Lázaro Cárdenas 152, 07730 México D. F., Mexico
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17
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Hartt GM, Shields GC, Kirschner KN. Hydration of OCS with One to Four Water Molecules in Atmospheric and Laboratory Conditions. J Phys Chem A 2008; 112:4490-5. [DOI: 10.1021/jp800229k] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Gregory M. Hartt
- Hamilton College, Department of Chemistry, Center for Molecular Design, 198 College Hill Road, Clinton, New York 13323
| | - George C. Shields
- Hamilton College, Department of Chemistry, Center for Molecular Design, 198 College Hill Road, Clinton, New York 13323
| | - Karl N. Kirschner
- Hamilton College, Department of Chemistry, Center for Molecular Design, 198 College Hill Road, Clinton, New York 13323
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18
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Shields GC, Kirschner KN. The Limitations of Certain Density Functionals in Modeling Neutral Water Clusters. ACTA ACUST UNITED AC 2008. [DOI: 10.1080/15533170701853918] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
Affiliation(s)
- George C. Shields
- a Department of Chemistry , Center for Molecular Design, Hamilton College , Clinton, New York, USA
| | - Karl N. Kirschner
- a Department of Chemistry , Center for Molecular Design, Hamilton College , Clinton, New York, USA
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