Diffusive diffraction phenomenon in a porous polymer material observed by NMR using radio-frequency field gradients

Design of a three-loop asymmetric coil producing a homogeneous radiofrequency B1 field gradient along the axis of a vertical sample tube

A coil system generating a vertical radio-frequency (rf) field gradient (B₁ gradient) has been built for surrounding, in a horizontal magnet, a vertical sample (object) of axial symmetry. The system comprises three coaxial loops with an overall shape either spherical or ellipsoidal. The geometry has been theoretically and experimentally devised for producing a very uniform gradient (cancellation of B₁ derivatives from second order up to sixth order) in the central region where a vertical receiver/transmitter coil is installed. The latter is of the saddle-shaped type and is geometrically and electrically decoupled from the gradient coil system. This receiver/transmitter coil not only ensures an optimal signal reception but, in addition, is able to deliver perfectly homogeneous rf hard pulses which are mandatory in most NMR experiments. In its present design, the system delivers a uniform gradient in a limited region but could be extended at will. Its main advantages over static field gradients (B₀ gradients) appear clearly in the case of very short transverse relaxation times. This property has been emphasized in the case of experiments leading to the measurement of diffusion coefficients. Also, this system would be suitable for chemical shift imaging (CSI) experiments as confirmed by a preliminary test experiment.

Diffusion-assisted selective dynamical recoupling: a new approach to measure background gradients in magnetic resonance

Dynamical decoupling, a generalization of the original NMR spin-echo sequence, is becoming increasingly relevant as a tool for reducing decoherence in quantum systems. Such sequences apply non-equidistant refocusing pulses for optimizing the coupling between systems, and environmental fluctuations characterized by a given noise spectrum. One such sequence, dubbed Selective Dynamical Recoupling (SDR) [P. E. S. Smith, G. Bensky, G. A. Álvarez, G. Kurizki, and L. Frydman, Proc. Natl. Acad. Sci. 109, 5958 (2012)], allows one to coherently reintroduce diffusion decoherence effects driven by fluctuations arising from restricted molecular diffusion [G. A. Álvarez, N. Shemesh, and L. Frydman, Phys. Rev. Lett. 111, 080404 (2013)]. The fully-refocused, constant-time, and constant-number-of-pulses nature of SDR also allows one to filter out "intrinsic" T1 and T2 weightings, as well as pulse errors acting as additional sources of decoherence. This article explores such features when the fluctuations are now driven by unrestricted molecular diffusion. In particular, we show that diffusion-driven SDR can be exploited to investigate the decoherence arising from the frequency fluctuations imposed by internal gradients. As a result, SDR presents a unique way of probing and characterizing these internal magnetic fields, given an a priori known free diffusion coefficient. This has important implications in studies of structured systems, including porous media and live tissues, where the internal gradients may serve as fingerprints for the system's composition or structure. The principles of this method, along with full analytical solutions for the unrestricted diffusion-driven modulation of the SDR signal, are presented. The potential of this approach is demonstrated with the generation of a novel source of MRI contrast, based on the background gradients active in an ex vivo mouse brain. Additional features and limitations of this new method are discussed.

Diffusive diffraction phenomenon observed by PGSE NMR technique in a sugar-based low-molecular-mass gel

The paper presents the diffusive diffraction phenomenon observed by the single-pulse-gradient spin-echo (s-PGSE) NMR technique in a real porous material: a gel composed of low-molecular-mass gelator methyl-4,6-O-(p-nitrobenzylidene)-α-D-glucopyranoside and toluene. Thanks to this phenomenon, we can probe the true microstructure (not xerogel) in which the toluene diffuses. To analyze the measured diffusion-diffraction pattern, we employed a composite bicompartmental model that superimposes restricted diffusion in small cavities of the gel matrix within the bundles of crossing fibers, with free diffusion in large and unconfined compartments between the bundles of crossing fibers. For restricted diffusion a pore-hopping formalism was applied. The observation of the diffraction pattern and its analysis leads to the conclusion that the pores, in the slow diffusing compartment of studied gel are ordered, at least locally, and relatively monodisperse with a size of 64 μm. Moreover, the restricting walls formed by the crossing fibers are perpendicular to the direction of the diffusion gradient.

WITHDRAWN: First observation of diffusion-diffraction pattern in neuronal tissue by double-pulsed-field-gradient NMR

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Accurate noninvasive measurement of cell size and compartment shape anisotropy in yeast cells using double-pulsed field gradient MR

The accurate characterization of pore morphology is of great interest in a wide range of scientific disciplines. Conventional single-pulsed field gradient (s-PFG) diffusion MR can yield compartmental size and shape only when compartments are coherently ordered using q-space approaches that necessitate strong gradients. However, double-PFG (d-PFG) methodology can provide novel microstructural information even when specimens are characterized by polydispersity in size and shape, and even when anisotropic compartments are randomly oriented. In this study, for the first time, we show that angular d-PFG experiments can be used to accurately measure cellular size and shape anisotropy of fixed yeast cells employing relatively weak gradients. The cell size, as measured by light microscopy, was found to be 5.32 ± 0.83 µm, whereas the results from noninvasive angular d-PFG experiments yielded a cell size of 5.46 ± 0.45 µm. Moreover, the low compartment shape anisotropy of the cells could be inferred from experiments conducted at long mixing times. Finally, similar experiments were conducted in a phantom comprising anisotropic compartments that were randomly oriented, showing that angular d-PFG MR provides novel information on compartment eccentricity that could not be accessed using conventional methods. Angular d-PFG methodology seems to be promising for the accurate estimation of compartment size and compartment shape anisotropy in heterogeneous systems in general, and biological cells and tissues in particular.

Probing microscopic architecture of opaque heterogeneous systems using double-pulsed-field-gradient NMR

Microarchitectural features of opaque porous media and biological tissues are of great importance in many scientific disciplines ranging from chemistry, material sciences, and geology to biology and medicine. Noninvasive characterization of coherently organized pores is rather straightforward since conventional diffusion magnetic resonance methods can detect anisotropy on a macroscopic scale; however, it remains extremely challenging to directly infer on microarchitectural features on the microscopic scale in heterogeneous porous media and biological cells that are comprised of randomly oriented compartments, a scenario widely encountered in Nature. Here, we show that the angular bipolar double-pulsed-field-gradient (bp-d-PFG) methodology is capable of reporting on unique microarchitectural features of highly heterogeneous systems. This was demonstrated on a toluene-in-water emulsion system, quartz sand, and even biological specimens such as yeast cells and isolated gray matter. We find that in the emulsion and yeast cells systems, the angular bp-d-PFG methodology uniquely revealed nearly an image of the pore space, since it conveyed direct microarchitectural information such as compartment shape and size. In two different quartz sand specimens, the angular bp-d-PFG experiments demonstrated the presence of randomly oriented anisotropic compartments. We also obtained unequivocal evidence that diffusion in interconnected interstices is restricted and therefore non-Gaussian. In biological contexts, the angular bp-d-PFG experiments could uniquely differentiate between spherical cells and randomly oriented compartments in gray matter tissue, information that could not be obtained by conventional NMR methods. The angular bp-d-PFG methodology also performs very well even when severe background gradients are present, as is often encountered in realistic systems. We conclude that this method seems to be the method of choice for characterizing the microstructure of porous media and biological cells noninvasively.

From single-pulsed field gradient to double-pulsed field gradient MR: gleaning new microstructural information and developing new forms of contrast in MRI

One of the hallmarks of diffusion NMR and MRI is its ability to utilize restricted diffusion to probe compartments much smaller than the excited volume or the MRI voxel, respectively, and to extract microstructural information from them. Single-pulsed field gradient (s-PFG) MR methodologies have been employed with great success to probe microstructures in various disciplines, ranging from chemistry to neuroscience. However, s-PFG MR also suffers from inherent shortcomings, especially when specimens are characterized by orientation or size distributions: in such cases, the microstructural information available from s-PFG experiments is limited or lost. Double-pulsed field gradient (d-PFG) MR methodology, an extension of s-PFG MR, has attracted attention owing to recent theoretical studies predicting that it can overcome certain inherent limitations of s-PFG MR. In this review, we survey the microstructural features that can be obtained from conventional s-PFG methods in the different q regimes, and highlight its limitations. The experimental aspects of d-PFG methodology are then presented, together with an overview of its theoretical underpinnings and a general framework for relating the MR signal decay and material microstructure, affording new microstructural parameters. We then discuss recent studies that have validated the theory using phantoms in which the ground truth is well known a priori, a crucial step prior to the application of d-PFG methodology in neuronal tissue. The experimental findings are in excellent agreement with the theoretical predictions and reveal, inter alia, zero-crossings of the signal decay, robustness towards size distributions and angular dependences of the signal decay from which accurate microstructural parameters, such as compartment size and even shape, can be extracted. Finally, we show some initial findings in d-PFG MR imaging. This review lays the foundation for future studies, in which accurate and novel microstructural information could be extracted from complex biological specimens, eventually leading to new forms of contrast in MRI.

Detecting diffusion-diffraction patterns in size distribution phantoms using double-pulsed field gradient NMR: Theory and experiments

NMR observable nuclei undergoing restricted diffusion within confining pores are important reporters for microstructural features of porous media including, inter-alia, biological tissues, emulsions and rocks. Diffusion NMR, and especially the single-pulsed field gradient (s-PFG) methodology, is one of the most important noninvasive tools for studying such opaque samples, enabling extraction of important microstructural information from diffusion-diffraction phenomena. However, when the pores are not monodisperse and are characterized by a size distribution, the diffusion-diffraction patterns disappear from the signal decay, and the relevant microstructural information is mostly lost. A recent theoretical study predicted that the diffusion-diffraction patterns in double-PFG (d-PFG) experiments have unique characteristics, such as zero-crossings, that make them more robust with respect to size distributions. In this study, we theoretically compared the signal decay arising from diffusion in isolated cylindrical pores characterized by lognormal size distributions in both s-PFG and d-PFG methodologies using a recently presented general framework for treating diffusion in NMR experiments. We showed the gradual loss of diffusion-diffraction patterns in broadening size distributions in s-PFG and the robustness of the zero-crossings in d-PFG even for very large standard deviations of the size distribution. We then performed s-PFG and d-PFG experiments on well-controlled size distribution phantoms in which the ground-truth is well-known a priori. We showed that the microstructural information, as manifested in the diffusion-diffraction patterns, is lost in the s-PFG experiments, whereas in d-PFG experiments the zero-crossings of the signal persist from which relevant microstructural information can be extracted. This study provides a proof of concept that d-PFG may be useful in obtaining important microstructural features in samples characterized by size distributions.

Observation of restricted diffusion in the presence of a free diffusion compartment: single- and double-PFG experiments

Theoretical and experimental studies of restricted diffusion have been conducted for decades using single pulsed field gradient (s-PFG) diffusion experiments. In homogenous samples, the diffusion-diffraction phenomenon arising from a single population of diffusing species has been observed experimentally and predicted theoretically. In this study, we introduce a composite bi-compartmental model which superposes restricted diffusion in microcapillaries with free diffusion in an unconfined compartment, leading to fast and slow diffusing components in the NMR signal decay. Although simplified (no exchange), the superposed diffusion modes in this model may exhibit features seen in more complex porous materials and biological tissues. We find that at low q-values the freely diffusing component masks the restricted diffusion component, and that prolongation of the diffusion time shifts the transition from free to restricted profiles to lower q-values. The effect of increasing the volume fraction of freely diffusing water was also studied; we find that the transition in the signal decay from the free mode to the restricted mode occurs at higher q-values when the volume fraction of the freely diffusing water is increased. These findings were then applied to a phantom consisting of crossing fibers, which demonstrated the same qualitative trends in the signal decay. The angular d-PGSE experiment, which has been recently shown to be able to measure small compartmental dimensions even at low q-values, revealed that microscopic anisotropy is lost at low q-values where the fast diffusing component is prominent. Our findings may be of importance in studying realistic systems which exhibit compartmentation.

Single-sided radio-frequency field gradient with two unsymmetrical loops: Applications to nuclear magnetic resonance

Magnetic field gradients are nowadays indispensable to most nuclear magnetic resonance experiments and are at the basis of magnetic resonance imaging (MRI). Most of the time, gradients of the static magnetic field are employed. Gradients of the radio-frequency (rf) field may constitute an interesting alternative. Until now, they were produced by a single loop. We demonstrate in this paper how two unsymmetrical series loops can be optimized to produce rf gradients of much better performances. This optimization is based on a thorough theoretical approach and the gradient uniformity is studied through accurate simulations. Two prototypes were devised: one for a 2.34 T horizontal magnet (used in MRI), and the other for a 4.7 T vertical magnet (used for pure spectroscopic applications). These two-loop systems were designed for proton resonance frequencies (100 and 200 MHz, respectively). Performances of both systems were verified (versus theoretical predictions) by means of experiments employing gradients in view of the determination of the self-diffusion coefficients of liquids.

Restricted diffusion and exchange of water in porous media: average structure determination and size distribution resolved from the effect of local field gradients on the proton NMR spectrum

NMR Pulsed field gradient measurements of the restrained diffusion of confined fluids constitute an efficient method to probe the local geometry in porous media. In most practical cases, the diffusion decay, when limited to its principal part, can be considered as Gaussian leading to an apparent diffusion coefficient. The evolution of the latter as a function of the diffusion interval yields average information on the surface/volume ratio of porosities and on the tortuosity of the network. In this paper, we investigate porous model systems of packed spheres (polystyrene and glass) with known mean diameter and polydispersity, and, in addition, a real porous polystyrene material. Applying an Inverse Laplace Transformation in the second dimension reveals an evolution of the apparent diffusion coefficient as a function of the resonance frequency. This evolution is related to a similar evolution of the transverse relaxation time T2. These results clearly show that each resonance frequency in the water proton spectrum corresponds to a particular magnetic environment produced by a given pore geometry in the porous media. This is due to the presence of local field gradients induced by magnetic susceptibility differences at the liquid/solid interface and to slow exchange rates between different pores as compared to the frequency differences in the spectrum. This interpretation is nicely confirmed by a series of two-dimensional exchange experiments.

Diffusive diffraction measurements in porous media: effect of structural disorder and internal magnetic field gradients

Pulsed Field Gradient NMR (PFG-NMR) method used to measure the self-diffusion coefficient of liquids can also be exploited to probe the local geometry of porous media. In most practical cases, the measured diffusion attenuation is generally Gaussian and can be interpreted in terms of an apparent diffusion coefficient. Using well chosen experimental conditions, a so called "diffusive diffraction" phenomenon can be observed in the diffusion curve with a specific shape and maxima location characteristic of the system local dimensions. In this paper we investigate this phenomenon by presenting new experimental results obtained on several porous model systems of packed sphere particles. Using different experimental approaches, the diffusion pattern could be finely observed and interpreted in the context of the pore hopping model formalism. Different calibrated systems of polystyrene and glass spheres with known mean diameter and polydispersity were used to investigate specifically the influence of structural heterogeneity and local internal gradients. Structural data obtained in that way were found in close agreement with laser diffraction granulometry measurement and Scanning Emission Microscopy.