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For: Kiewisch K, Eickerling G, Reiher M, Neugebauer J. Topological analysis of electron densities from Kohn-Sham and subsystem density functional theory. J Chem Phys 2008;128:044114. [DOI: 10.1063/1.2822966] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Mi W, Luo K, Trickey SB, Pavanello M. Orbital-Free Density Functional Theory: An Attractive Electronic Structure Method for Large-Scale First-Principles Simulations. Chem Rev 2023;123:12039-12104. [PMID: 37870767 DOI: 10.1021/acs.chemrev.2c00758] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2023]
2
Jansen M, Reinholdt P, Hedegård ED, König C. Theoretical and Numerical Comparison of Quantum- and Classical Embedding Models for Optical Spectra. J Phys Chem A 2023. [PMID: 37399130 DOI: 10.1021/acs.jpca.3c02540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/05/2023]
3
Sen S, Senjean B, Visscher L. Characterization of excited states in time-dependent density functional theory using localized molecular orbitals. J Chem Phys 2023;158:054115. [PMID: 36754801 DOI: 10.1063/5.0137729] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
4
Miranda-Quintana RA, Heidar-Zadeh F, Fias S, Chapman AEA, Liu S, Morell C, Gómez T, Cárdenas C, Ayers PW. Molecular Interactions From the Density Functional Theory for Chemical Reactivity: The Interaction Energy Between Two-Reagents. Front Chem 2022;10:906674. [PMID: 35769444 PMCID: PMC9234655 DOI: 10.3389/fchem.2022.906674] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 04/19/2022] [Indexed: 12/13/2022]  Open
5
Abdolahpur S, Bagheri N, Azami SM. Kinetic Energy Pressure and Relaxation Analysis of Intermolecular Interaction between Carbon Nanorings and Some Molecules. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2021. [DOI: 10.1134/s0036024421130021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
6
Bensberg M, Neugebauer J. Automatic basis-set adaptation in projection-based embedding. J Chem Phys 2019;150:184104. [DOI: 10.1063/1.5084550] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
7
Chulhai DV, Goodpaster JD. Projection-Based Correlated Wave Function in Density Functional Theory Embedding for Periodic Systems. J Chem Theory Comput 2018;14:1928-1942. [DOI: 10.1021/acs.jctc.7b01154] [Citation(s) in RCA: 55] [Impact Index Per Article: 9.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
8
Ghanavati F, Azami SM. Topological analysis of steric and relaxation deformation densities. Mol Phys 2017. [DOI: 10.1080/00268976.2017.1281457] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
9
Tamukong PK, Khait YG, Hoffmann MR. Accurate Dissociation of Chemical Bonds Using DFT-in-DFT Embedding Theory with External Orbital Orthogonality. J Phys Chem A 2016;121:256-264. [DOI: 10.1021/acs.jpca.6b09909] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
10
Schlüns D, Franchini M, Götz AW, Neugebauer J, Jacob CR, Visscher L. Analytical gradients for subsystem density functional theory within the slater-function-based amsterdam density functional program. J Comput Chem 2016;38:238-249. [DOI: 10.1002/jcc.24670] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2016] [Revised: 10/14/2016] [Accepted: 10/19/2016] [Indexed: 11/09/2022]
11
Goez A, Neugebauer J. Including protein density relaxation effects in first-principles embedding calculations of cofactor excitation energies. Mol Phys 2016. [DOI: 10.1080/00268976.2016.1199823] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
12
Gowda V, Laitinen RS, Telkki VV, Larsson AC, Antzutkin ON, Lantto P. DFT calculations in the assignment of solid-state NMR and crystal structure elucidation of a lanthanum(iii) complex with dithiocarbamate and phenanthroline. Dalton Trans 2016;45:19473-19484. [DOI: 10.1039/c6dt03705d] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
13
Goez A, Neugebauer J. A Local Variant of the Conductor-Like Screening Model for Fragment-Based Electronic-Structure Methods. J Chem Theory Comput 2015;11:5277-90. [DOI: 10.1021/acs.jctc.5b00832] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
14
Chulhai DV, Jensen L. Frozen Density Embedding with External Orthogonality in Delocalized Covalent Systems. J Chem Theory Comput 2015;11:3080-8. [DOI: 10.1021/acs.jctc.5b00293] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
15
Wesolowski TA, Shedge S, Zhou X. Frozen-Density Embedding Strategy for Multilevel Simulations of Electronic Structure. Chem Rev 2015;115:5891-928. [DOI: 10.1021/cr500502v] [Citation(s) in RCA: 219] [Impact Index Per Article: 24.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
16
Krishtal A, Ceresoli D, Pavanello M. Subsystem real-time time dependent density functional theory. J Chem Phys 2015;142:154116. [DOI: 10.1063/1.4918276] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
17
Ramos P, Papadakis M, Pavanello M. Performance of Frozen Density Embedding for Modeling Hole Transfer Reactions. J Phys Chem B 2015;119:7541-57. [DOI: 10.1021/jp511275e] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2023]
18
Luber S. Local electric dipole moments for periodic systems via density functional theory embedding. J Chem Phys 2014;141:234110. [DOI: 10.1063/1.4903828] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]  Open
19
Fabiano E, Laricchia S, Della Sala F. Frozen density embedding with non-integer subsystems' particle numbers. J Chem Phys 2014;140:114101. [PMID: 24655166 DOI: 10.1063/1.4868033] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
20
Genova A, Ceresoli D, Pavanello M. Periodic subsystem density-functional theory. J Chem Phys 2014;141:174101. [DOI: 10.1063/1.4897559] [Citation(s) in RCA: 35] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
21
Jacob CR, Neugebauer J. Subsystem density-functional theory. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2014. [DOI: 10.1002/wcms.1175] [Citation(s) in RCA: 229] [Impact Index Per Article: 22.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
22
Tamukong PK, Khait YG, Hoffmann MR. Density Differences in Embedding Theory with External Orbital Orthogonality. J Phys Chem A 2014;118:9182-200. [DOI: 10.1021/jp5062495] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
23
Laricchia S, Constantin LA, Fabiano E, Della Sala F. Laplacian-Level Kinetic Energy Approximations Based on the Fourth-Order Gradient Expansion: Global Assessment and Application to the Subsystem Formulation of Density Functional Theory. J Chem Theory Comput 2013;10:164-79. [DOI: 10.1021/ct400836s] [Citation(s) in RCA: 58] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
24
Humbert-Droz M, Zhou X, Shedge SV, Wesolowski TA. How to choose the frozen density in Frozen-Density Embedding Theory-based numerical simulations of local excitations? Theor Chem Acc 2013. [DOI: 10.1007/s00214-013-1405-1] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
25
Kiewisch K, Jacob CR, Visscher L. Quantum-Chemical Electron Densities of Proteins and of Selected Protein Sites from Subsystem Density Functional Theory. J Chem Theory Comput 2013;9:2425-40. [DOI: 10.1021/ct3008759] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
26
Laricchia S, Fabiano E, Sala FD. Semilocal and hybrid density embedding calculations of ground-state charge-transfer complexes. J Chem Phys 2013;138:124112. [DOI: 10.1063/1.4795825] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
27
Beyhan SM, Götz AW, Visscher L. Bond energy decomposition analysis for subsystem density functional theory. J Chem Phys 2013;138:094113. [DOI: 10.1063/1.4793629] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
28
Laricchia S, Fabiano E, Della Sala F. On the accuracy of frozen density embedding calculations with hybrid and orbital-dependent functionals for non-bonded interaction energies. J Chem Phys 2012;137:014102. [PMID: 22779632 DOI: 10.1063/1.4730748] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
29
Tecmer P, van Lingen H, Gomes ASP, Visscher L. The electronic spectrum of CUONg4 (Ng = Ne, Ar, Kr, Xe): New insights in the interaction of the CUO molecule with noble gas matrices. J Chem Phys 2012;137:084308. [DOI: 10.1063/1.4742765] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
30
Solovyeva A, Pavanello M, Neugebauer J. Spin densities from subsystem density-functional theory: Assessment and application to a photosynthetic reaction center complex model. J Chem Phys 2012;136:194104. [DOI: 10.1063/1.4709771] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
31
On the Orthogonality of Orbitals in Subsystem Kohn–Sham Density Functional Theory. ACTA ACUST UNITED AC 2012. [DOI: 10.1016/b978-0-444-59440-2.00003-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register]
32
Severo Pereira Gomes A, Jacob CR. Quantum-chemical embedding methods for treating local electronic excitations in complex chemical systems. ACTA ACUST UNITED AC 2012. [DOI: 10.1039/c2pc90007f] [Citation(s) in RCA: 165] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
33
Li JH, Chai JD, Guo GY, Hayashi M. Significant role of the DNA backbone in mediating the transition origin of electronic excitations of B-DNA – implication from long range corrected TDDFT and quantified NTO analysis. Phys Chem Chem Phys 2012;14:9092-103. [DOI: 10.1039/c2cp23676a] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
34
Pavanello M, Neugebauer J. Modelling charge transfer reactions with the frozen density embedding formalism. J Chem Phys 2011;135:234103. [DOI: 10.1063/1.3666005] [Citation(s) in RCA: 79] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
35
Potential-energy surfaces of local excited states from subsystem- and selective Kohn–Sham-TDDFT. Chem Phys 2011. [DOI: 10.1016/j.chemphys.2011.02.007] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
36
Laricchia S, Fabiano E, Constantin LA, Della Sala F. Generalized Gradient Approximations of the Noninteracting Kinetic Energy from the Semiclassical Atom Theory: Rationalization of the Accuracy of the Frozen Density Embedding Theory for Nonbonded Interactions. J Chem Theory Comput 2011;7:2439-51. [DOI: 10.1021/ct200382w] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
37
Bieler NS, Haag MP, Jacob CR, Reiher M. Analysis of the Cartesian Tensor Transfer Method for Calculating Vibrational Spectra of Polypeptides. J Chem Theory Comput 2011;7:1867-81. [DOI: 10.1021/ct2001478] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
38
Fux S, Reiher M. Electron Density in Quantum Theory. ELECTRON DENSITY AND CHEMICAL BONDING II 2011. [DOI: 10.1007/430_2010_37] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
39
Götz K, Meier F, Gatti C, Burow AM, Sierka M, Sauer J, Kaupp M. Modeling environmental effects on charge density distributions in polar organometallics: validation of embedded cluster models for the methyl lithium crystal. J Comput Chem 2010;31:2568-76. [PMID: 20740555 DOI: 10.1002/jcc.21548] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
40
Laricchia S, Fabiano E, Della Sala F. Frozen density embedding with hybrid functionals. J Chem Phys 2010;133:164111. [DOI: 10.1063/1.3494537] [Citation(s) in RCA: 44] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
41
Neugebauer J, Curutchet C, Muñoz-Losa A, Mennucci B. A Subsystem TDDFT Approach for Solvent Screening Effects on Excitation Energy Transfer Couplings. J Chem Theory Comput 2010;6:1843-51. [DOI: 10.1021/ct100138k] [Citation(s) in RCA: 70] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
42
Fux S, Jacob CR, Neugebauer J, Visscher L, Reiher M. Accurate frozen-density embedding potentials as a first step towards a subsystem description of covalent bonds. J Chem Phys 2010;132:164101. [DOI: 10.1063/1.3376251] [Citation(s) in RCA: 159] [Impact Index Per Article: 11.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
43
Beyhan SM, Götz AW, Jacob CR, Visscher L. The weak covalent bond in NgAuF (Ng=Ar, Kr, Xe): A challenge for subsystem density functional theory. J Chem Phys 2010;132:044114. [DOI: 10.1063/1.3297886] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
44
Neugebauer J. Subsystem-Based Theoretical Spectroscopy of Biomolecules and Biomolecular Assemblies. Chemphyschem 2009;10:3148-73. [DOI: 10.1002/cphc.200900538] [Citation(s) in RCA: 83] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
45
Neugebauer J. On the calculation of general response properties in subsystem density functional theory. J Chem Phys 2009;131:084104. [DOI: 10.1063/1.3212883] [Citation(s) in RCA: 48] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]  Open
46
Analysis of electron density distributions from subsystem density functional theory applied to coordination bonds. Chem Phys Lett 2008. [DOI: 10.1016/j.cplett.2008.07.038] [Citation(s) in RCA: 63] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
47
Jacob CR, Visscher L. A subsystem density-functional theory approach for the quantum chemical treatment of proteins. J Chem Phys 2008;128:155102. [DOI: 10.1063/1.2906128] [Citation(s) in RCA: 81] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
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