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Brünker P, Domenianni LI, Fleck N, Lindner J, Schiemann O, Vöhringer P. Intramolecular O-H⋯S hydrogen bonding in threefold symmetry: Line broadening dynamics from ultrafast 2DIR-spectroscopy and ab initio calculations. J Chem Phys 2021; 154:134305. [PMID: 33832237 DOI: 10.1063/5.0047885] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The dynamics of intramolecular hydrogen-bonding involving sulfur atoms as acceptors is studied using two-dimensional infrared (2DIR) spectroscopy. The molecular system is a tertiary alcohol whose donating hydroxy group is embedded in a hydrogen-bond potential with torsional C3-symmetry about the carbon-oxygen bond. The linear and 2DIR-spectra recorded in the OH-stretching region of the alcohol can be simulated very well using Kubo's line shape theory based on the cumulant expansion for evaluating the linear and nonlinear optical response functions. The correlation function for OH-stretching frequency fluctuations reveals an ultrafast component decaying with a time constant of 700 fs, which is in line with the apparent decay of the center line slopes averaged over absorption and bleach/emission signals. In addition, a quasi-static inhomogeneity is detected, which prevents the 2DIR line shape to fully homogenize within the observation window of 4 ps. The experimental data were then analyzed in more detail using a full ab initio approach that merges time-dependent structural information from classical molecular dynamics (MD) simulations with an OH-stretching frequency map derived from density functional theory (DFT). The latter method was also used to obtain a complementary transition dipole map to account for non-Condon effects. The 2DIR-spectra obtained from the MD/DFT method are in good agreement with the experimental data at early waiting delays, thereby corroborating an assignment of the fast decay of the correlation function to the dynamics of hydrogen-bond breakage and formation.
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Affiliation(s)
- Paul Brünker
- Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Luis I Domenianni
- Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Nico Fleck
- Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Jörg Lindner
- Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Olav Schiemann
- Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Peter Vöhringer
- Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
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2
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Yadav VK. Vibrational spectral diffusion in supercritical deuterated ammonia from first principles simulations: Roles of hydrogen bonds, free ND modes and inertial rotation of ammonia molecules. J Mol Liq 2018. [DOI: 10.1016/j.molliq.2018.08.089] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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3
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Yadav VK, Chandra A. Dynamics of vibrational frequency fluctuations in deuterated liquid ammonia: roles of fluctuating hydrogen bonds and free ND modes. MOLECULAR SIMULATION 2018. [DOI: 10.1080/08927022.2018.1475739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/16/2022]
Affiliation(s)
- Vivek Kumar Yadav
- Department of Chemistry, Indian Institute of Technology Kanpur , Kanpur, India
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology Kanpur , Kanpur, India
- Department of Theoretical and Computational Molecular Science, Institute of Molecular Science , Okazaki, Japan
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4
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Butkovskaya NI, Setser DW. Infrared Chemiluminescence Study of the Reaction of Hydroxyl Radical with Formamide and the Secondary Unimolecular Reaction of Chemically Activated Carbamic Acid. J Phys Chem A 2018; 122:3735-3746. [PMID: 29614222 DOI: 10.1021/acs.jpca.8b01512] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Reactions of OH and OD radicals with NH2CHO and ND2CHO were studied by Fourier transform infrared emission spectroscopy of the product molecules from a fast-flow reactor at 298 K. Vibrational distributions of the HOD and H2O molecules from the primary reactions with the C-H bond were obtained by computer simulation of the emission spectra. The vibrational distributions resemble those for other direct H atom abstraction reactions, such as with acetaldehyde. The highest observed level gives an estimate of the C-H bond dissociation energy in formamide of 90.5 ± 1.3 kcal mol-1. Observation of CO2, ammonia, and secondary water chemiluminescence gave evidence that recombination of OH and NH2CO forms carbamic acid (NH2COOH) with excitation energy of 103 kcal mol-1, which decomposes through two pathways forming either NH3 + CO2 or H2O + HNCO. The branching fraction for ammonia formation was estimated to be 2-3 times larger than formation of water. This observation was confirmed by RRKM calculation of the decomposition rate constants. A new simulation method was developed to analyze infrared emission from NH3, NH2D, ND2H, and ND3. Dynamical aspects of the primary and secondary reactions are discussed based on the vibrational distributions of CO2 and those of H/D isotopes of water and ammonia.
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Affiliation(s)
- N I Butkovskaya
- Semenov Institute of Chemical Physics, Russian Academy of Sciences , 119991 Moscow , Russian Federation
| | - D W Setser
- Department of Chemistry , Kansas State University , Manhattan , Kansas 66506 , United States
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Rubtsova NI, Kurnosov AA, Burin AL, Rubtsov IV. Temperature dependence of the ballistic energy transport in perfluoroalkanes. J Phys Chem B 2014; 118:8381-7. [PMID: 24697782 DOI: 10.1021/jp502062p] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Temperature dependence of intramolecular energy transport in perfluoroalkane oligomers with a chain length of 3-11 carbon atoms terminated by a carboxylic acid moiety on one end and a -CF2H group on another end was studied in solution experimentally and theoretically. Experiments were performed using a dual-frequency relaxation-assisted two-dimensional infrared spectroscopy method. The energy transport was initiated by exciting the C═O stretching mode of the acid and recorded by measuring a cross-peak amplitude between the C═O stretching and the C-H bending modes as a function of the waiting time between the excitation and probing. An efficient transport regime with a mean free path of 16.4 ± 2 Å is observed at 35 °C. The energy transport speed decreases at elevated temperatures, indicating a switch from the ballistic transport regime to diffusive. The modeling of the energy transport involving both ballistic and diffusive mechanisms is performed. It explains the temperature dependence of the energy transport speed and confirms a switch of the transport regime from ballistic at lower temperatures to diffusive at higher temperatures.
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Affiliation(s)
- Natalia I Rubtsova
- Department of Chemistry, Tulane University , New Orleans, Louisiana 70118, United States
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6
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Urbanek J, Vöhringer P. Below-Band-Gap Ionization of Liquid-to-Supercritical Ammonia: Geminate Recombination via Proton-Coupled Back Electron Transfer. J Phys Chem B 2013; 118:265-77. [DOI: 10.1021/jp4103993] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Janus Urbanek
- Abteilung für Molekulare
Physikalische Chemie, Institut für Physikalische und Theoretische
Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Peter Vöhringer
- Abteilung für Molekulare
Physikalische Chemie, Institut für Physikalische und Theoretische
Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
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7
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Urbanek J, Dahmen A, Torres-Alacan J, Königshoven P, Lindner J, Vöhringer P. Femtosecond Two-Photon Ionization and Solvated Electron Geminate Recombination in Liquid-to-Supercritical Ammonia. J Phys Chem B 2012; 116:2223-33. [DOI: 10.1021/jp211725r] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Janus Urbanek
- Abteilung
für Molekulare Physikalische Chemie,
Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße
12, 53115 Bonn, Germany
| | - Annika Dahmen
- Abteilung
für Molekulare Physikalische Chemie,
Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße
12, 53115 Bonn, Germany
| | - Joel Torres-Alacan
- Abteilung
für Molekulare Physikalische Chemie,
Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße
12, 53115 Bonn, Germany
| | - Peter Königshoven
- Abteilung
für Molekulare Physikalische Chemie,
Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße
12, 53115 Bonn, Germany
| | - Jörg Lindner
- Abteilung
für Molekulare Physikalische Chemie,
Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße
12, 53115 Bonn, Germany
| | - Peter Vöhringer
- Abteilung
für Molekulare Physikalische Chemie,
Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße
12, 53115 Bonn, Germany
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Schäfer T, Kandratsenka A, Vöhringer P, Schroeder J, Schwarzer D. Vibrational energy relaxation of the ND-stretching vibration of NH2D in liquid NH3. Phys Chem Chem Phys 2012; 14:11651-6. [DOI: 10.1039/c2cp41382e] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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9
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Knop S, Lindner J, Vöhringer P. OH and NH Stretching Vibrational Relaxation of Liquid Ethanolamine. ACTA ACUST UNITED AC 2011. [DOI: 10.1524/zpch.2011.0125] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
Abstract
Abstract
Femtosecond mid-infrared pump-probe spectroscopy was carried out to obtain information about the dynamics of vibrational energy relaxation in liquid ethanolamine at room temperature and ambient pressure. Through partial deuteration it was possible to disentangle the dynamics resulting from the OH and the NH stretching modes that proceed independently and simultaneously in the hydrogen-bonded liquid following an ultrafast vibrational excitation by a resonant mid-infrared pulse. The OH-stretching vibrational lifetime was determined to be 450 fs while the NH-stretching lifetime was found to be 1.2 ps. This large difference in lifetimes highlights the importance of the hydrogen-donating and the hydrogen-accepting character of the vibrating groups that are engaged in hydrogen-bonding.
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Affiliation(s)
- Stephan Knop
- Rheinische Friedrich-Wilhelms-Universität Bonn, Lehrstuhl für Molekulare Physikalische Chemie, Bonn, Deutschland
| | - Jörg Lindner
- Rheinische Friedrich-Wilhelms-Universität Bonn, Lehrstuhl für Molekulare Physikalische Chemie, Bonn, Deutschland
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Olschewski M, Knop S, Lindner J, Vöhringer P. Vibrational relaxation of azide ions in liquid-to-supercritical water. J Chem Phys 2011; 134:214504. [DOI: 10.1063/1.3598108] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
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Vyalov I, Kiselev M, Tassaing T, Soetens J, Federov M, Damay P, Idrissi A. Reorientation relaxation in supercritical ammonia. J Mol Liq 2011. [DOI: 10.1016/j.molliq.2010.09.012] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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12
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Tassaing T, Soetens JC, Vyalov I, Kiselev M, Idrissi A. Supercritical ammonia: A molecular dynamics simulation and vibrational spectroscopic investigation. J Chem Phys 2010; 133:214505. [PMID: 21142306 DOI: 10.1063/1.3506868] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022] Open
Affiliation(s)
- T Tassaing
- Institut des Sciences Moléculaires, Université Bordeaux 1, UMR-CNRS 5255, 351 cours de la Libération, 33405 Talence Cedex, France
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Vyalov I, Kiselev M, Tassaing T, Soetens JC, Idrissi A. Investigation of the Local Structure in Sub and Supercritical Ammonia Using the Nearest Neighbor Approach: A Molecular Dynamics Analysis. J Phys Chem B 2010; 114:15003-10. [DOI: 10.1021/jp108701t] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Affiliation(s)
- I. Vyalov
- Laboratoire de Spectrochimie Infrarouge et Raman, Centre d’Etudes et de Recherches Lasers et Applications, Université des Sciences et Technologies de Lille, 59655 Villeneuve d’Ascq Cedex, France, Institute of Solution Chemistry of the RAS, Akademicheskaya st.1, 153045 Ivanovo, Russia, and Institut des Sciences Moléculaires, UMR Université Bordeaux I - CNRS n 5255, 351, Cours de la Libération, 33405 Talence Cedex, France
| | - M. Kiselev
- Laboratoire de Spectrochimie Infrarouge et Raman, Centre d’Etudes et de Recherches Lasers et Applications, Université des Sciences et Technologies de Lille, 59655 Villeneuve d’Ascq Cedex, France, Institute of Solution Chemistry of the RAS, Akademicheskaya st.1, 153045 Ivanovo, Russia, and Institut des Sciences Moléculaires, UMR Université Bordeaux I - CNRS n 5255, 351, Cours de la Libération, 33405 Talence Cedex, France
| | - T. Tassaing
- Laboratoire de Spectrochimie Infrarouge et Raman, Centre d’Etudes et de Recherches Lasers et Applications, Université des Sciences et Technologies de Lille, 59655 Villeneuve d’Ascq Cedex, France, Institute of Solution Chemistry of the RAS, Akademicheskaya st.1, 153045 Ivanovo, Russia, and Institut des Sciences Moléculaires, UMR Université Bordeaux I - CNRS n 5255, 351, Cours de la Libération, 33405 Talence Cedex, France
| | - J. C. Soetens
- Laboratoire de Spectrochimie Infrarouge et Raman, Centre d’Etudes et de Recherches Lasers et Applications, Université des Sciences et Technologies de Lille, 59655 Villeneuve d’Ascq Cedex, France, Institute of Solution Chemistry of the RAS, Akademicheskaya st.1, 153045 Ivanovo, Russia, and Institut des Sciences Moléculaires, UMR Université Bordeaux I - CNRS n 5255, 351, Cours de la Libération, 33405 Talence Cedex, France
| | - A. Idrissi
- Laboratoire de Spectrochimie Infrarouge et Raman, Centre d’Etudes et de Recherches Lasers et Applications, Université des Sciences et Technologies de Lille, 59655 Villeneuve d’Ascq Cedex, France, Institute of Solution Chemistry of the RAS, Akademicheskaya st.1, 153045 Ivanovo, Russia, and Institut des Sciences Moléculaires, UMR Université Bordeaux I - CNRS n 5255, 351, Cours de la Libération, 33405 Talence Cedex, France
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Seehusen J, Schwarzer D, Lindner J, Vöhringer P. Equilibrium and mid-infrared driven vibrational dynamics of artificial hydrogen-bonded networks. Phys Chem Chem Phys 2009; 11:8484-95. [DOI: 10.1039/b903466h] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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