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Abdel-Rahman MA, Soliman KA, Abdel-Azeim S, El-Nahas AM, Taketsugu T, Nakajima T, El-Meligy AB. Ab initio calculations on structure and stability of BN/CC isosterism in azulene. Sci Rep 2023; 13:10260. [PMID: 37355719 DOI: 10.1038/s41598-023-37047-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Accepted: 06/14/2023] [Indexed: 06/26/2023] Open
Abstract
Herein, we investigated the thermodynamic stability and opto-electronic properties of a newly BN-doped azulene. The gas-phase formation enthalpies of 11 BN-doped azulene were calculated by the atomization energy method using three computational models (CBS-APNO, CBS-QB3, and G3MP2). The results suggest that AZ-1N9B exhibits the highest stability among the studied isomers. On the other hand, AZ-1B9N and AZ-9B10N display nearly equal stability with relative energies of 19.36 and 19.82 kcal/mol at CBS-QB3, respectively. These two isomers are considered the least stable among the investigated compounds. The frontier molecular orbitals (FMO), ionization energies (IE), and electron affinities (EA) of these isomers were discussed. Additionally, the electronic absorption spectra of the BN-doped azulenes were computed using the TD-B3LYP/6-31 + G(d,p) and TD-CAM-B3LYP level of theories, which using a long-range corrected hybrid functional in acetone. The computational results obtained in this research are align closely with the existing literature, thereby reinforcing the credibility and reliability of our findings.
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Affiliation(s)
| | - Kamal A Soliman
- Chemistry Department, Faculty of Science, Benha University, Benha, 13518, Egypt.
| | - Safwat Abdel-Azeim
- Center for Integrative Petroleum Research (CIPR), College of Petroleum Engineering and Geosciences, King Fahd University of Petroleum and Minerals (KFUPM), Dhahran, 31261, Saudi Arabia
| | - Ahmed M El-Nahas
- Chemistry Department, Faculty of Science, Menoufia University, Shebin El-Kom, 32512, Egypt
| | - Tetsuya Taketsugu
- Department of Chemistry, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
- Institute for Chemical Reaction Design and Discovery (WPI-ICReDD), Hokkaido University, Sapporo, 060-0810, Japan
| | - Takahito Nakajima
- Center for Computational Science, RIKEN, 7-1-26 Minatojima-Minami, Chuo, Kobe, 650-0047, Japan
| | - Asmaa B El-Meligy
- Chemistry Department, Faculty of Science, Menoufia University, Shebin El-Kom, 32512, Egypt.
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2
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Fárník M, Fedor J, Kočišek J, Lengyel J, Pluhařová E, Poterya V, Pysanenko A. Pickup and reactions of molecules on clusters relevant for atmospheric and interstellar processes. Phys Chem Chem Phys 2021; 23:3195-3213. [PMID: 33524089 DOI: 10.1039/d0cp06127a] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
In this perspective, we review experiments with molecules picked up on large clusters in molecular beams with the focus on the processes in atmospheric and interstellar chemistry. First, we concentrate on the pickup itself, and we discuss the pickup cross sections. We measure the uptake of different atmospheric molecules on mixed nitric acid-water clusters and determine the accommodation coefficients relevant for aerosol formation in the Earth's atmosphere. Then the coagulation of the adsorbed molecules on the clusters is investigated. In the second part of this perspective, we review examples of different processes triggered by UV-photons or electrons in the clusters with embedded molecules. We start with the photodissociation of hydrogen halides and Freon CF2Cl2 on ice nanoparticles in connection with the polar stratospheric ozone depletion. Next, we mention reactions following the excitation and ionization of the molecules adsorbed on clusters. The first ionization-triggered reaction observed between two different molecules picked up on the cluster was the proton transfer between methanol and formic acid deposited on large argon clusters. Finally, negative ion reactions after slow electron attachment are illustrated by two examples: mixed nitric acid-water clusters, and hydrogen peroxide deposited on large ArN and (H2O)N clusters. The selected examples are discussed from the perspective of the atmospheric and interstellar chemistry, and several future directions are proposed.
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Affiliation(s)
- Michal Fárník
- J. Heyrovský Institute of Physical Chemistry, v.v.i., The Czech Academy of Sciences, Dolejškova 2155/3, 182 23 Prague, Czech Republic.
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3
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Liu J, Hättig C, Höfener S. Analytical nuclear gradients for electron-attached and electron-detached states for the second-order algebraic diagrammatic construction scheme combined with frozen-density embedding. J Chem Phys 2020; 152:174109. [DOI: 10.1063/5.0002851] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Jing Liu
- Institute of Physical Chemistry, Karlsruhe Institute of Technology (KIT), P.O. Box 6980, D-76049 Karlsruhe, Germany
| | - Christof Hättig
- Lehrstuhl für Theoretische Chemie, Ruhr-Universität Bochum, D-44780 Bochum, Germany
| | - Sebastian Höfener
- Institute of Physical Chemistry, Karlsruhe Institute of Technology (KIT), P.O. Box 6980, D-76049 Karlsruhe, Germany
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Med J, Sršeň Š, Slavíček P, Domaracka A, Indrajith S, Rousseau P, Fárník M, Fedor J, Kočišek J. Vibrationally Mediated Stabilization of Electrons in Nonpolar Matter. J Phys Chem Lett 2020; 11:2482-2489. [PMID: 32154726 DOI: 10.1021/acs.jpclett.0c00278] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
Abstract
We explore solvation of electrons in nonpolar matter, here represented by butadiene clusters. Isolated butadiene supports only the existence of transient anions (resonances). Two-dimensional electron energy loss spectroscopy shows that the resonances lead to an efficient vibrational excitation of butadiene, which can result into the almost complete loss of energy of the interacting electron. Cluster-beam experiments show that molecular clusters of butadiene form stable anions, however only at sizes of more than 9 molecular units. We have calculated the distribution of electron affinities of clusters using classical and path integral molecular dynamics simulations. There is almost a continuous transition from the resonant to the bound anions with an increase in cluster size. The comparison of the classical and quantum dynamics reveals that the electron binding is strongly supported by molecular vibrations, brought about by nuclear zero-point motion and thermal agitation. We also inspected the structure of the solvated electron, finding it well localized.
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Affiliation(s)
- Jakub Med
- Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague 6, Czech Republic
| | - Štěpán Sršeň
- Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague 6, Czech Republic
| | - Petr Slavíček
- Department of Physical Chemistry, University of Chemistry and Technology, Technická 5, 16628 Prague 6, Czech Republic
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - A Domaracka
- Normandie Univ., ENSICAEN, UNICAEN, CEA, CNRS, CIMAP, 14000 Caen, France
| | - S Indrajith
- Normandie Univ., ENSICAEN, UNICAEN, CEA, CNRS, CIMAP, 14000 Caen, France
| | - P Rousseau
- Normandie Univ., ENSICAEN, UNICAEN, CEA, CNRS, CIMAP, 14000 Caen, France
| | - M Fárník
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - J Fedor
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
| | - J Kočišek
- J. Heyrovský Institute of Physical Chemistry v.v.i., The Czech Academy of Sciences, Dolejškova 3, 18223 Prague, Czech Republic
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5
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de la Garza CGV, García GL, Olmedo EM, Peña ER, Fomine S. Electronic structure of isomeric graphene nanoflakes. COMPUT THEOR CHEM 2018. [DOI: 10.1016/j.comptc.2018.08.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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6
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Xu T, Wang W, Yin S. Electrostatic Polarization Energies of Charge Carriers in Organic Molecular Crystals: A Comparative Study with Explicit State-Specific Atomic Polarizability Based AMOEBA Force Field and Implicit Solvent Method. J Chem Theory Comput 2018; 14:3728-3739. [DOI: 10.1021/acs.jctc.8b00132] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tao Xu
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an City 710119, People’s Republic of China
| | - Wenliang Wang
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an City 710119, People’s Republic of China
| | - Shiwei Yin
- Key Laboratory for Macromolecular Science of Shaanxi Province, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi’an City 710119, People’s Republic of China
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Sutton C, Tummala NR, Kemper T, Aziz SG, Sears J, Coropceanu V, Brédas JL. Understanding the effects of electronic polarization and delocalization on charge-transport levels in oligoacene systems. J Chem Phys 2017; 146:224705. [DOI: 10.1063/1.4984783] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Christopher Sutton
- School of Chemistry and Biochemistry and Center for Organic Photonics and Electronics, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
| | - Naga Rajesh Tummala
- School of Chemistry and Biochemistry and Center for Organic Photonics and Electronics, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
| | - Travis Kemper
- School of Chemistry and Biochemistry and Center for Organic Photonics and Electronics, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
| | - Saadullah G. Aziz
- Department of Chemistry, King Abdulaziz University, Jeddah 21589, Saudi Arabia
| | - John Sears
- School of Chemistry and Biochemistry and Center for Organic Photonics and Electronics, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
| | - Veaceslav Coropceanu
- School of Chemistry and Biochemistry and Center for Organic Photonics and Electronics, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
| | - Jean-Luc Brédas
- School of Chemistry and Biochemistry and Center for Organic Photonics and Electronics, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, USA
- Laboratory for Computational and Theoretical Chemistry of Advanced Materials, Division of Physical Science and Engineering, King Abdullah University of Science and Technology, Thuwal 23955-6900, Saudi Arabia
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Xu T, Wang W, Yin S, Wang Y. Evaluation of electronic polarization energy in oligoacene molecular crystals using the solvated supermolecular approach. Phys Chem Chem Phys 2017; 19:14453-14461. [DOI: 10.1039/c7cp01534h] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
The solvated supermolecular approach, i.e., block-localized wave function coupled with polarizable continuum model (BLW/PCM), was proposed to calculate molecular ionization potential (IP), electron affinity (EA) in the solid phase, and related electronic polarization.
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Affiliation(s)
- Tao Xu
- Key Laboratory for Macromolecular Science of Shaanxi Province
- School of Chemistry and Chemical Engineering
- Shaanxi Normal University
- Xi'an city
- China
| | - Wenliang Wang
- Key Laboratory for Macromolecular Science of Shaanxi Province
- School of Chemistry and Chemical Engineering
- Shaanxi Normal University
- Xi'an city
- China
| | - Shiwei Yin
- Key Laboratory for Macromolecular Science of Shaanxi Province
- School of Chemistry and Chemical Engineering
- Shaanxi Normal University
- Xi'an city
- China
| | - Yun Wang
- Centre for Clean Environment and Energy
- Griffith School of Environment
- Griffith University
- Australia
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Masubuchi T, Sugawara Y, Nakajima A. Adiabatic electron affinity of pentacene and perfluoropentacene molecules studied by anion photoelectron spectroscopy: Molecular insights into electronic properties. J Chem Phys 2016; 145:244306. [DOI: 10.1063/1.4973012] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Affiliation(s)
- Tsugunosuke Masubuchi
- Department of Chemistry, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan
| | - Yoshito Sugawara
- Department of Chemistry, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan
| | - Atsushi Nakajima
- Department of Chemistry, Faculty of Science and Technology, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan
- JST, ERATO, Nakajima Designer Nanocluster Assembly Project, 3-2-1 Sakado, Takatsu-ku, Kawasaki 213-0012, Japan
- Keio Institute of Pure and Applied Sciences (KiPAS), Keio University, 3-14-1, Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan
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10
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Ryno SM, Risko C, Brédas JL. Impact of Molecular Packing on Electronic Polarization in Organic Crystals: The Case of Pentacene vs TIPS-Pentacene. J Am Chem Soc 2014; 136:6421-7. [DOI: 10.1021/ja501725s] [Citation(s) in RCA: 99] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]
Affiliation(s)
- Sean M. Ryno
- School of Chemistry and Biochemistry
and Center for Organic Photonics and Electronics, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - Chad Risko
- School of Chemistry and Biochemistry
and Center for Organic Photonics and Electronics, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
| | - Jean-Luc Brédas
- School of Chemistry and Biochemistry
and Center for Organic Photonics and Electronics, Georgia Institute of Technology, Atlanta, Georgia 30332-0400, United States
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11
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Nakajima A. Study on Electronic Properties of Composite Clusters toward Nanoscale Functional Advanced Materials. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2013. [DOI: 10.1246/bcsj.20120298] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Affiliation(s)
- Atsushi Nakajima
- Department of Chemistry, Faculty of Science and Technology, Keio University
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12
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Huzak M, Hajgató B, Deleuze M. Benchmark theoretical study of the ionization energies, electron affinities and singlet–triplet energy gaps of azulene, phenanthrene, pyrene, chrysene and perylene. Chem Phys 2012. [DOI: 10.1016/j.chemphys.2012.08.003] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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13
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Affiliation(s)
- Ryan M. Young
- Department of Chemistry, University of California, Berkeley, California 94720,
United States
| | - Daniel M. Neumark
- Department of Chemistry, University of California, Berkeley, California 94720,
United States
- Chemical
Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California
94720, United States
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14
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Eilmes A. A theoretical study of small tetracene clusters: Stability and charge stabilization energies. COMPUT THEOR CHEM 2012. [DOI: 10.1016/j.comptc.2011.12.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Pentlehner D, Riechers R, Dick B, Slenczka A, Even U, Lavie N, Brown R, Luria K. Rapidly pulsed helium droplet source. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2009; 80:043302. [PMID: 19405651 DOI: 10.1063/1.3117196] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
A pulsed valve connected to a closed-cycle cryostat was optimized for producing helium droplets. The pulsed droplet beam appeared with a bimodal size distribution. The leading part of the pulse consists of droplets suitable for doping with molecules. The average size of this part can be varied between 10(4) and 10(6) helium atoms, and the width of the distribution is smaller as compared to a continuous-flow droplet source. The system has been tested in a single pulse mode and at repetition rates of up to 500 Hz with almost constant intensity. The droplet density was found to be increased by more than an order of magnitude as compared to a continuous-flow droplet source.
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Affiliation(s)
- Dominik Pentlehner
- Institute for Physical and Theoretical Chemistry, University of Regensburg, 93053 Regensburg, Germany
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