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Upadhyay S, Benali A, Jordan KD. Capturing Correlation Effects in Positron Binding to Atoms and Molecules. J Chem Theory Comput 2024. [PMID: 39288307 DOI: 10.1021/acs.jctc.4c00727] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/19/2024]
Abstract
A major challenge in contemporary electronic structure theory involves the development of methods to describe in a balanced manner the contribution of correlation effects to energy differences. This challenge can be even greater for multicomponent systems containing more than one type of quantum particle. In the present work, we describe a flexible code for carrying out self-consistent field and configuration interaction (CI) calculations on multicomponent systems and use it to generate trial wave functions for use in diffusion Monte Carlo (DMC) calculations of the positron affinity of Be, Be2, Be4, Mg, CS2, and benzene. The resulting positron affinities (PAs) are in good agreement with the best values from the literature.
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Affiliation(s)
- Shiv Upadhyay
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15218, United States
| | - Anouar Benali
- Computational Sciences Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Kenneth D Jordan
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15218, United States
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2
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The any particle molecular orbital/molecular mechanics approach. J Mol Model 2019; 25:316. [PMID: 31529219 DOI: 10.1007/s00894-019-4153-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2019] [Accepted: 08/14/2019] [Indexed: 10/26/2022]
Abstract
A computational scheme is proposed to broaden the range of applications of multicomponent methodologies for the study of local properties of big molecular systems existing in the gas phase and in solvated environments. This scheme extends the any particle molecular orbital (APMO) approach in the quantum mechanics/molecular mechanics (QM/MM) framework. As a first assessment of the performance of the proposed approach, we estimate the proton affinities (PAs) of seventy amines in the gas phase and the proton binding energies (PBEs) in the gas phase and in an explicitly solvated environment of the sixty-one protons present in the chignolin protein. These calculations are performed with the QM/MM versions of the APMO second-order proton propagator (APMO-PP2) and the APMO extended Koopmans' theorem (APMO-KT) approaches. Calculated PAs and PBEs show significant reductions in the computational effort with a reduced loss in accuracy. These results suggest that the APMO/MM scheme might be used as a low-cost multi-component alternative for studies of local properties in big molecular systems. Graphical Abstract QMMM regions and CPU times for the APMO/MM approach.
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Affiliation(s)
- Edit Mátyus
- Institute of Chemistry, ELTE Eötvös Loránd University, Budapest, Hungary
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Charry J, Pedraza-González L, Reyes A. On the physical interpretation of the nuclear molecular orbital energy. J Chem Phys 2017; 146:214103. [PMID: 28576090 PMCID: PMC5453789 DOI: 10.1063/1.4984098] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2017] [Accepted: 05/11/2017] [Indexed: 11/14/2022] Open
Abstract
Recently, several groups have extended and implemented molecular orbital (MO) schemes to simultaneously obtain wave functions for electrons and selected nuclei. Many of these schemes employ an extended Hartree-Fock approach as a first step to find approximate electron-nuclear wave functions and energies. Numerous studies conducted with these extended MO methodologies have explored various effects of quantum nuclei on physical and chemical properties. However, to the best of our knowledge no physical interpretation has been assigned to the nuclear molecular orbital energy (NMOE) resulting after solving extended Hartree-Fock equations. This study confirms that the NMOE is directly related to the molecular electrostatic potential at the position of the nucleus.
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Affiliation(s)
- Jorge Charry
- Department of Chemistry, Universidad Nacional de Colombia, Ave. Cra. 30 #45-03, Bogotá, Colombia
| | - Laura Pedraza-González
- Department of Chemistry, Universidad Nacional de Colombia, Ave. Cra. 30 #45-03, Bogotá, Colombia
| | - Andrés Reyes
- Department of Chemistry, Universidad Nacional de Colombia, Ave. Cra. 30 #45-03, Bogotá, Colombia
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Cassam-Chenaï P, Suo B, Liu W. A quantum chemical definition of electron–nucleus correlation. Theor Chem Acc 2017. [DOI: 10.1007/s00214-017-2081-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Moncada F, Flores-Moreno R, Reyes A. Theoretical calculation of polarizability isotope effects. J Mol Model 2017; 23:90. [DOI: 10.1007/s00894-017-3236-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2016] [Accepted: 01/13/2017] [Indexed: 11/29/2022]
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IKABATA Y, NAKAI H. Nuclear Orbital Energy in Nuclear Orbital plus Molecular Orbital Method and Proton Binding Energy Calculation. JOURNAL OF COMPUTER CHEMISTRY-JAPAN 2016. [DOI: 10.2477/jccj.2016-0011] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
Affiliation(s)
- Yasuhiro IKABATA
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University,3-4-1 Okubo, Shinjuku, Tokyo 169-8555, JAPAN
| | - Hiromi NAKAI
- Department of Chemistry and Biochemistry, School of Advanced Science and Engineering, Waseda University,3-4-1 Okubo, Shinjuku, Tokyo 169-8555, JAPAN
- Research Institute for Science and Engineering, Waseda University, 3-4-1 Okubo, Shinjuku, Tokyo 169-8555, JAPAN
- CREST, Japan Science and Technology Agency, 4-1-8 Honcho, Kawaguchi, Saitama 332-0012, JAPAN
- ESICB, Kyoto University, Kyotodaigaku-Katsura, Nishikyo, Kyoto 615-8520, JAPAN
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Ellis BH, Aggarwal S, Chakraborty A. Development of the Multicomponent Coupled-Cluster Theory for Investigation of Multiexcitonic Interactions. J Chem Theory Comput 2015; 12:188-200. [DOI: 10.1021/acs.jctc.5b00879] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Benjamin H. Ellis
- Department
of Chemistry, Syracuse University, Syracuse, New York 13244, United States
| | - Somil Aggarwal
- Jamesville-DeWitt
High School, DeWitt, New York 13214, United States
| | - Arindam Chakraborty
- Department
of Chemistry, Syracuse University, Syracuse, New York 13244, United States
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Posada E, Moncada F, Reyes A. Negative Muon Chemistry: The Quantum Muon Effect and the Finite Nuclear Mass Effect. J Phys Chem A 2014; 118:9491-9. [DOI: 10.1021/jp501289s] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Edwin Posada
- Departamento
de Química, Universidad Nacional de Colombia, Av. Cra.
30 #45-03, Bogotá, Colombia
| | - Félix Moncada
- Departamento
de Química, Universidad Nacional de Colombia, Av. Cra.
30 #45-03, Bogotá, Colombia
- Programa
de Química, Universidad de la Amazonia, Calle 17 Diagonal 17 - Carrera 3F, Florencia, Colombia
| | - Andrés Reyes
- Departamento
de Química, Universidad Nacional de Colombia, Av. Cra.
30 #45-03, Bogotá, Colombia
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Aguirre NF, Villarreal P, Delgado-Barrio G, Posada E, Reyes A, Biczysko M, Mitrushchenkov AO, de Lara-Castells MP. Including nuclear quantum effects into highly correlated electronic structure calculations of weakly bound systems. J Chem Phys 2013; 138:184113. [DOI: 10.1063/1.4803546] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Moncada F, Cruz D, Reyes A. Muonic alchemy: Transmuting elements with the inclusion of negative muons. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.04.062] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Goli M, Shahbazian S. The two-component quantum theory of atoms in molecules (TC-QTAIM): foundations. Theor Chem Acc 2012. [DOI: 10.1007/s00214-012-1208-9] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Efficient density functional theory calculations with weak hydrogen quantum effect: Electron density analysis. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2011.12.059] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
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Kikuta Y, Ishimoto T, Nagashima U. Geometrical and kinetic isotope effects on SN2 chemical reactions using multi-component molecular orbital method. COMPUT THEOR CHEM 2011. [DOI: 10.1016/j.comptc.2011.02.005] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Shigeta Y. Molecular Theory Including Quantum Effects and Thermal Fluctuations. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2009. [DOI: 10.1246/bcsj.82.1323] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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Kato T, Yamanouchi K. Time-dependent multiconfiguration theory for describing molecular dynamics in diatomic-like molecules. J Chem Phys 2009; 131:164118. [DOI: 10.1063/1.3249967] [Citation(s) in RCA: 53] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
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Ando K. Semiquantal Valence-Bond Wave Packet Description of Chemical Bonding. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2009. [DOI: 10.1246/bcsj.82.975] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]
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