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Toutounji M. Homogeneous Dephasing in Photosynthetic Bacterial Reaction Centers: Time Correlation Function Approach. Chemphyschem 2024; 25:e202300335. [PMID: 37953408 DOI: 10.1002/cphc.202300335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 11/06/2023] [Accepted: 11/07/2023] [Indexed: 11/14/2023]
Abstract
A new tractable linear electronic transition dipole moment time correlation function (ETDMTCF) that accurately accounts for electronic dephasing, asymmetry, and width of 1-phonon profile, which the zero-phonon line (ZPL) contributes to it, in Rhodopseudomonas viridis bacterial reaction center is derived. This time correlation function proves to be superior to other frequency-domain expressions in case of strong electron-phonon coupling (which is often the case in bacterial RCs and pigment-protein complexes), many vibrational modes involved, and high temperature, whereby more vibronic and electronic (sequence) transitions would arise. The Fourier transform of this ETDMTCF leads to asymmetric multiphonon profiles composed of Lorentzian distribution and Gaussian distribution on the high- and low-energy sides, respectively, whereby the overtone widths fold themselves with that of the one-phonon profile. This ETDMTCF also features expedient computation in large systems using asymmetric phonon profiles to account correctly for dephasing and pigment-protein interaction (electron-phonon coupling). The derived ETDMTCF allows computing all nonlinear optical signals in both time and frequency domains, through the nonlinear dipole moment time correlation functions (as guided by nonlinear optical response theory) in line with the eight Liouville space pathways. The linear transition dipole moment time correlation function is of a central value as the nonlinear transition dipole moment time correlation function is expressed in terms of the linear transition dipole moment time correlation function, derived herein. One of the great advantages of presenting this ETDMTCF is its applicability to nonlinear transition dipole moment time correlation functions in line with the eight Liouville space pathways needed in computing nonlinear signals. As such, there is more to the utility and applicability of the presented ETDMTCF besides computational expediency and efficiency. Results show good agreement with the reported literature. The intimate connection between a one-phonon profile and the corresponding bath spectral density in photosynthetic complexes is discussed.
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Affiliation(s)
- Mohamad Toutounji
- College of Science, Department of Chemistry, P. O. Box 15551, UAE University, Al-Ain, United Arab Emirate
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Green AT, Martens CC. Zombie cats on the quantum-classical frontier: Wigner-Moyal and semiclassical limit dynamics of quantum coherence in molecules. J Chem Phys 2023; 159:204102. [PMID: 37991156 DOI: 10.1063/5.0177421] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 11/02/2023] [Indexed: 11/23/2023] Open
Abstract
In this paper, we investigate the time evolution of quantum coherence-the off-diagonal elements of the density matrix of a multistate quantum system-from the perspective of the Wigner-Moyal formalism. This approach provides an exact phase space representation of quantum mechanics. We consider the coherent evolution of nuclear wavepackets in a molecule with two electronic states. For harmonic potentials, the problem is analytically soluble for both a fully quantum mechanical description and a semiclassical description. We highlight the serious deficiencies of the semiclassical treatment of coherence for general systems and illustrate how even qualitative accuracy requires higher order terms in the Moyal expansion to be included. The model provides an experimentally relevant example of a molecular Schrödinger's cat state. The alive and dead cats of the exact two-state quantum evolution collapse into a "zombie" cat in the semiclassical limit-an averaged behavior, neither alive nor dead, leading to significant errors. The inclusion of the Moyal correction restores a faithful simultaneously alive and dead representation of the cat that is experimentally observable.
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Affiliation(s)
- Austin T Green
- University of California, Irvine, California 92697-2025, USA
| | - Craig C Martens
- University of California, Irvine, California 92697-2025, USA
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Toutounji M. Mixed Quantum-Classical Liouville Equation Treatment of Electronic Spectroscopy of Condensed Systems: Harmonic and Anharmonic Electron-Phonon Coupling. J Chem Theory Comput 2023. [PMID: 37365487 DOI: 10.1021/acs.jctc.2c01225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/28/2023]
Abstract
This Review integrates the use of electronic optical response function theory and the mixed quantum-classical (MQC) Liouville equation (MQCLE), thereby leading to electronic spectroscopy in MQC media. It further sheds light on the applicability, utility, and efficiency of the mixed quantum-classical dynamics (MQCD) formalism, which starts off with the MQCLE, in probing spectroscopy and dynamics of condensed systems, whereby quantum mechanics and classical mechanics are combined systematically. The author has been exploring and implementing MQCD to investigate electron-phonon coupling effects on electronic dephasing in harmonic and anharmonic systems by calculating linear and nonlinear optical transition analytically and numerically dipole moment time correlation functions in an MQC environment, thereby presenting an in depth spectral profile analysis and their shape and symmetry. The distinctive capability of the MQC time correlation functions is that ergodicity and stationarity properties are inherently satisfied as part of the mixed quantum-classical dynamics (MQCD) framework, unlike classical correlation functions. While some research groups have applied MQCLE to calculate vibrational spectra to study hydrogen-bonded complexes in a MQC environment and other groups calculated Optical response function to probe electron transfer dynamics using the basis mapping technique, the approach, purpose, rigor, applications, and path to the end results reported herein are different. Finally, the same framework is employed to study dissipative systems in the MQC limit, whereby the zero-phonon line adopts the correct width and eliminates its asymmetry. While the full quantum mechanical model, like the multimode Brownian oscillator (MBO) model, yields the correct width and inaccurate shape in the low-temperature limit, the MQCD formalism seems to produce an accurate zero-phonon profile. Nonlinear optical signals are also reviewed in MQC media to show the applicability and utility of this approach. The vibronic optical response functions developed here will account for geometry change, frequency change, and anharmonicity upon electronic excitation to accurately probe electronic dephasing, electron-phonon coupling, shape, and symmetry of profiles and present differences and similarities to the MBO model on pure electronic dephasing. Frequency change and anharmonicity are vitally crucial for accurately assessing electron-phonon coupling upon electronic excitation. This is an additional unique result obtained by the author to further demonstrate the applicability and utility of this approach over other approximation schemes in probing electronic dephasing including that of the MBO model.
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Affiliation(s)
- Mohamad Toutounji
- College of Science, Department of Chemistry, P.O. Box 15551, UAE University, Al-Ain, 33000, UAE
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Toutounji M. Electronic dephasing of polyatomic molecules interacting with mixed quantum-classical media. Phys Chem Chem Phys 2021; 23:21981-21994. [PMID: 34569571 DOI: 10.1039/d1cp00783a] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
This paper offers an expedient, efficient, and unique treatment of multimode quantum subsystems (polyatomic molecules) interacting with a classical environment in which the time evolution of the coupling term is governed by the algebraic rules of statistical mechanics in mixed quantum-classical systems developed by Kapral and Nielsen [S. Nielsen, R. Kapral, and G. Ciccotti, J. Chem. Phys., 2001, 115, 5805]. This unique time evolution of the coupling term is neither quantal nor classical but rather something different that relies heavily on Wigner transform, thereby leading to non-Newtonian mechanics. As such, an argument is presented that the approach provided herein for treating polyatomic molecular systems in a mixed quantum-classical environment is new and different as opposed to the many other schemes of semiclassical dynamics that are normally employed to study such systems. The merits of expediency and efficiency of the herein mixed quantum-classical dynamics calculations emanate from avoiding using integrals for time evolutions, and, instead, employing matrix mechanics whereby LU decomposition and singular value decomposition (SVD) numerical techniques are utilized for diagonalization. An electronic 2-level subsystem interacting with a classical bath through the spin-boson model to render accurate pure electronic dephasing in multimode molecular systems by eliminating the unphysical asymmetry in the line shape of the zero-phonon line (ZPL) exhibited by other models is exploited. This work has a superior advantage over the single-mode spin-boson model, published previously, whereby a multitude of types of vibrational modes (slow, fast, or both) of the quantum subsystem may readily be handled using different spectral densities. The spin-boson model used here is a composite system made up of a quantum subsystem, i.e., a subsystem bilinearly coupled to a multidimensional harmonic oscillator (representing the intermediate quantum vibrational modes between the electronic subsystem and the bath), interacting with a classical bath, where the coupling term is governed by the mixed quantum-classical Liouville equation. A multidimensional coherent-state approach is employed to deal with the time evolution of the quantum subsystem. A closed-form expression of linear and nonlinear optical electronic transition dipole moment time correlation functions in mixed quantum-classical dissipative media is derived. Pure electronic dephasing is probed using the aforementioned approach. Linear absorption spectra and 4-wave mixing signals (e.g., photon echo and pump-probe) are calculated showing a reasonable thermal broadening, temporal decay, and accurate pure dephasing.
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Affiliation(s)
- Mohamad Toutounji
- College of Science, Department of Chemistry, P. O. Box 15551, UAE University, Al-Ain, United Arab Emirates.
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A new methodology for dealing with time-dependent quantities in anharmonic molecules I: theory. Theor Chem Acc 2014. [DOI: 10.1007/s00214-014-1461-1] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
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Conte R, Pollak E. Continuum limit frozen Gaussian approximation for the reduced thermal density matrix of dissipative systems. J Chem Phys 2012; 136:094101. [DOI: 10.1063/1.3682241] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Viscondi TF, de Aguiar MAM. Initial value representation for the SU(n) semiclassical propagator. J Chem Phys 2011; 134:234105. [DOI: 10.1063/1.3601344] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022] Open
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Wong SYY, Benoit DM, Lewerenz M, Brown A, Roy PN. Determination of molecular vibrational state energies using the ab initio semiclassical initial value representation: application to formaldehyde. J Chem Phys 2011; 134:094110. [PMID: 21384953 DOI: 10.1063/1.3553179] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
We have demonstrated the use of ab initio molecular dynamics (AIMD) trajectories to compute the vibrational energy levels of molecular systems in the context of the semiclassical initial value representation (SC-IVR). A relatively low level of electronic structure theory (HF/3-21G) was used in this proof-of-principle study. Formaldehyde was used as a test case for the determination of accurate excited vibrational states. The AIMD-SC-IVR vibrational energies have been compared to those from curvilinear and rectilinear vibrational self-consistent field/vibrational configuration interaction with perturbation selected interactions-second-order perturbation theory (VSCF/VCIPSI-PT2) and correlation-corrected vibrational self-consistent field (cc-VSCF) methods. The survival amplitudes were obtained from selecting different reference wavefunctions using only a single set of molecular dynamics trajectories. We conclude that our approach is a further step in making the SC-IVR method a practical tool for first-principles quantum dynamics simulations.
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Affiliation(s)
- Stephanie Y Y Wong
- Department of Chemistry, University of Alberta, Edmonton, Alberta T6G 2G2, Canada
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Toutounji M. Anharmonic electron-phonon coupling in condensed media: 1. Formalism. J Phys Chem B 2011; 115:5121-32. [PMID: 20722358 DOI: 10.1021/jp104731s] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Three different schemes for calculating anharmonic line shape functions are reported and discussed for the first time in this article using eigenstate representation. First, the linear dipole-moment time correlation function (DMTCF), homogeneous (single-site) absorption line shape function, and the respective Franck-Condon factors (FCF) are derived and explored as a molecule makes a transition from a harmonic to an anharmonic (Morse potential) electronic state. Second, the linear DMTCF, homogeneous absorption line shape function, and FCFs are also derived as a molecule makes a transition from one anharmonic to another linearly displaced anharmonic state; FCFs in this case are reported in an exact closed-form expressed in terms of Appell's hypergeometric function. Third, same as the latter set of results are reported but with both linearly displaced and distorted shape of the upper Morse potential. FCFs of the zero-phonon line in all three cases are reported. The first case is rather mathematically complex as a result of taking the overlap integral of the Morse oscillator eigenfunctions, whose spatial decay is a simple exponential, with those of harmonic oscillator, whose decay is a Gaussian. This form of a functional disparity gives rise to some challenges. Model calculations are presented and discussed.
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Affiliation(s)
- Mohamad Toutounji
- College of Science, Department of Chemistry, United Arab Emirates University, Al-Ain, UAE.
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Toutounji M. Exploring Anharmonic Nuclear Dynamics and Spectroscopy Using the Kratzer Oscillator. J Chem Theory Comput 2011; 7:1804-13. [DOI: 10.1021/ct1007185] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Mohamad Toutounji
- Department of Chemistry, College of Science, United Arab Emirates University, Al-Ain, United Arab Emirates
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Swenson DWH, Levy T, Cohen G, Rabani E, Miller WH. Application of a semiclassical model for the second-quantized many-electron Hamiltonian to nonequilibrium quantum transport: The resonant level model. J Chem Phys 2011; 134:164103. [DOI: 10.1063/1.3583366] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Goletz CM, Koch W, Grossmann F. Semiclassical dynamics of open quantum systems: Comparing the finite with the infinite perspective. Chem Phys 2010. [DOI: 10.1016/j.chemphys.2010.06.019] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Linearized approximations for condensed phase non-adiabatic dynamics: Multi-layered baths and Brownian dynamics implementation. Chem Phys 2010. [DOI: 10.1016/j.chemphys.2010.02.021] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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Goletz CM, Grossmann F. Decoherence and dissipation in a molecular system coupled to an environment: An application of semiclassical hybrid dynamics. J Chem Phys 2009; 130:244107. [DOI: 10.1063/1.3157162] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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Toutounji M. Empirical relaxation function and spectral density for underdamped vibrations at low temperatures. J Chem Phys 2009; 130:094501. [DOI: 10.1063/1.3085066] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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