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Yeole SD. Quantum chemical study of molecular hydration of phenylxylopyranose sugar. J CHEM SCI 2022. [DOI: 10.1007/s12039-022-02100-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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Koli AR, Yeole SD. Understanding the interactions between hydrogen-bonded complexes of xylose and water: Quantum Chemical Investigation. J CHEM SCI 2020. [DOI: 10.1007/s12039-020-1741-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Koli AR, Yeole SD. Molecular hydration of carbohydrates: quantum chemical study of xylofuranose–(H2O)n clusters. Theor Chem Acc 2020. [DOI: 10.1007/s00214-020-02634-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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Zhang F, Zhang H, Xin W, Chen P, Hu Y, Zhang X, Zhao Y. Probing the structural evolution and electronic properties of divalent metal Be 2Mg n clusters from small to medium-size. Sci Rep 2020; 10:6052. [PMID: 32269297 PMCID: PMC7142069 DOI: 10.1038/s41598-020-63237-8] [Citation(s) in RCA: 35] [Impact Index Per Article: 8.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2019] [Accepted: 03/27/2020] [Indexed: 11/09/2022] Open
Abstract
Bimetallic clusters have aroused increased attention because of the ability to tune their own properties by changing size, shape, and doping. In present work, a structural search of the global minimum for divalent bimetal Be2Mgn (n = 1-20) clusters are performed by utilizing CALYPSO structural searching method with subsequent DFT optimization. We investigate the evolution of geometries, electronic properties, and nature of bonding from small to medium-sized clusters. It is found that the structural transition from hollow 3D structures to filled cage-like frameworks emerges at n = 10 for Be2Mgn clusters, which is obviously earlier than that of Mgn clusters. The Be atoms prefer the surface sites in small cluster size, then one Be atom tend to embed itself inside the magnesium motif. At the number of Mg larger than eighteen, two Be atoms have been completely encapsulated by caged magnesium frameworks. In all Be2Mgn clusters, the partial charge transfer from Mg to Be takes place. An increase in the occupations of the Be-2p and Mg-3p orbitals reveals the increasing metallic behavior of Be2Mgn clusters. The analysis of stability shows that the cluster stability can be enhanced by Be atoms doping and the Be2Mg8 cluster possesses robust stability across the cluster size range of n = 1-20. There is s-p hybridization between the Be and Mg atoms leading to stronger Be-Mg bonds in Be2Mg8 cluster. This finding is supported by the multi-center bonds and Mayer bond order analysis.
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Affiliation(s)
- Feige Zhang
- School of Electrical and Electronic Engineering, Baoji University of Arts and Sciences, Baoji, 721016, China
| | - Hairong Zhang
- School of Electrical and Electronic Engineering, Baoji University of Arts and Sciences, Baoji, 721016, China
| | - Wang Xin
- College of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China
| | - Peng Chen
- College of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China
| | - Yanfei Hu
- School of Physics and Electronic Engineering, Sichuan University of Science & Engineering, Zigong, 643000, China
| | - Xiaoyi Zhang
- College of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China
| | - Yaru Zhao
- College of Physics and Optoelectronics Technology, Baoji University of Arts and Sciences, Baoji, 721016, China.
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Ahuja P, Molayem M, Gadre SR. Electrostatics-Assisted Building-Up Procedure for Capturing Energy Minima of Metal Clusters: Test Case of Ag n Clusters. J Phys Chem A 2019; 123:7872-7880. [PMID: 31433180 DOI: 10.1021/acs.jpca.9b05601] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Global geometry optimization of metal clusters is an important problem in nanophysics. The starting geometries of the clusters generated with empirical or other model potentials are generally optimized further by density functional theory (DFT)-based energy minimization. For this purpose, several algorithms such as simulated annealing, genetic algorithms, basin hopping, etc. are used. Our building-up procedure generates putative lower-energy structures of metal (M) clusters, Mn+1, Mn+2, etc., by anchoring one or more metal atoms in the vicinity of the minima of the molecular electrostatic potential (MESP) of Mn. Here, we report an application of this method to Agn clusters, for 5 ≤ n ≤ 20, followed up by DFT-based geometry optimization, generating several lower-energy structures than those reported in the literature. New low-energy isomers are obtained by applying the same procedure to the test case of mixed-metal clusters, NinAgm, for n + m = 4 and 5. In conclusion, our MESP-based building-up procedure offers a new general methodology for generating lower-energy geometries of metal clusters.
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Affiliation(s)
- Prateek Ahuja
- Department of Chemical Sciences , IISER Mohali , Sector-81, Mohali 140306 , India
| | - Mohammad Molayem
- Physical and Theoretical Chemistry , Saarland University , Saarbrücken 66123 , Germany
| | - Shridhar R Gadre
- Interdisciplinary School of Scientific Computing and Department of Chemistry , Savitribai Phule Pune University , Pune 411007 , India
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Wang Y, Lv J, Zhu L, Lu S, Yin K, Li Q, Wang H, Zhang L, Ma Y. Materials discovery via CALYPSO methodology. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2015; 27:203203. [PMID: 25921406 DOI: 10.1088/0953-8984/27/20/203203] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The structure prediction at the atomic level is emerging as a state-of-the-art approach to accelerate the functionality-driven discovery of materials. By combining the global swarm optimization algorithm with first-principles thermodynamic calculations, it exploits the power of current supercomputer architectures to robustly predict the ground state and metastable structures of materials with only the given knowledge of chemical composition. In this Review, we provide an overview of the basic theory and main features of our as-developed CALYPSO structure prediction method, as well as its versatile applications to design of a broad range of materials including those of three-dimensional bulks, two-dimensional reconstructed surfaces and layers, and isolated clusters/nanoparticles or molecules with a variety of functional properties. The current challenges faced by structure prediction for materials discovery and future developments of CALYPSO to overcome them are also discussed.
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Affiliation(s)
- Yanchao Wang
- State Key Laboratory of Superhard Materials, Jilin University, Changchun 130012, People's Republic of China. College of Materials Science and Engineering, Jilin University, Changchun 130012, People's Republic of China
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Affiliation(s)
- Michael A Collins
- †Research School of Chemistry, Australian National University, Canberra, ACT 0200, Australia
| | - Ryan P A Bettens
- ‡Department of Chemistry, National University of Singapore, 3 Science Drive 3, Singapore 117543, Singapore
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Lv J, Wang Y, Zhu L, Ma Y. Particle-swarm structure prediction on clusters. J Chem Phys 2012; 137:084104. [DOI: 10.1063/1.4746757] [Citation(s) in RCA: 369] [Impact Index Per Article: 30.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023] Open
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Kobayashi M, Touma T, Nakai H. Dynamic hyperpolarizability calculations of large systems: The linear-scaling divide-and-conquer approach. J Chem Phys 2012; 136:084108. [DOI: 10.1063/1.3687341] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
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Chattaraj PK, Das R, Duley S, Vigneresse JL. Structure-stability diagrams and stability-reactivity landscapes: a conceptual DFT study. Theor Chem Acc 2012. [DOI: 10.1007/s00214-012-1089-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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Gordon MS, Fedorov DG, Pruitt SR, Slipchenko LV. Fragmentation Methods: A Route to Accurate Calculations on Large Systems. Chem Rev 2011; 112:632-72. [DOI: 10.1021/cr200093j] [Citation(s) in RCA: 836] [Impact Index Per Article: 64.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Affiliation(s)
- Mark S. Gordon
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames Iowa 50011, United States
| | - Dmitri G. Fedorov
- Nanosystem Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), 1-1-1 Umezono, Tsukuba, Ibaraki 305-8568, Japan
| | - Spencer R. Pruitt
- Department of Chemistry and Ames Laboratory, Iowa State University, Ames Iowa 50011, United States
| | - Lyudmila V. Slipchenko
- Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States
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Yeole SD, Gadre SR. Molecular cluster building algorithm: electrostatic guidelines and molecular tailoring approach. J Chem Phys 2011; 134:084111. [PMID: 21361531 DOI: 10.1063/1.3556819] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Nano-sized clusters of various materials are recent experimental targets, since they exhibit size-dependent physico-chemical properties. A vast amount of literature is available on the study of molecular clusters but general methods for systematic evolution of their growth are rather scarce. The present work reports a molecular cluster building algorithm based on the electrostatic guidelines, followed by ab initio investigations, enabled by the application of molecular tailoring approach. Applications of the algorithm for generating geometries and interaction energies of large molecular clusters of zinc sulfide, benzene, and water are presented.
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Rahalkar AP, Yeole SD, Ganesh V, Gadre SR. Molecular Tailoring: An Art of the Possible for Ab Initio Treatment of Large Molecules and Molecular Clusters. CHALLENGES AND ADVANCES IN COMPUTATIONAL CHEMISTRY AND PHYSICS 2011. [DOI: 10.1007/978-90-481-2853-2_10] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
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Mahadevi AS, Rahalkar AP, Gadre SR, Sastry GN. Ab initio investigation of benzene clusters: Molecular tailoring approach. J Chem Phys 2010; 133:164308. [DOI: 10.1063/1.3494536] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023] Open
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Experimental and theoretical investigation of γ-butyrolactone decomposition on lithium electrode surface. Effect of Li3N layer. Russ Chem Bull 2010. [DOI: 10.1007/s11172-010-0126-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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Roy D, Balanarayan P, Gadre SR. An appraisal of Poincaré-Hopf relation and application to topography of molecular electrostatic potentials. J Chem Phys 2009; 129:174103. [PMID: 19045329 DOI: 10.1063/1.2999558] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The Poincaré-Hopf relation is studied for molecular electrostatic potentials (MESPs) of a few test systems such as cyclopropane, cyclobutane, pyridine, and benzene. Appropriate spheres centered at various points, including the center of mass of the system under study, are constructed and the MESP gradient is evaluated on the corresponding spherical grid. The change in directional nature of MESP gradient on the surface of these spheres gives indication of the critical points of the function. This is used for developing a method for locating the critical points of MESP. The strategy also enables a general definition of the Euler characteristic (EC) of the molecule, independent of any region or space. Further, the effect of basis set and level of theory on the EC is discussed.
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Affiliation(s)
- D Roy
- Department of Chemistry, University of Pune, Pune-411007, India
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