1
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Li K, Kikugawa G, Kawagoe Y, Zhao Y, Okabe T. Determination of interaction parameters in a bottom-up approach employed in reactive dissipative particle dynamics simulations for thermosetting polymers. SOFT MATTER 2024; 20:4591-4607. [PMID: 38805009 DOI: 10.1039/d3sm01743e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
The limitations in previous dissipative particle dynamics (DPD) studies confined simulations to a narrow resin range. This study refines DPD parameter calculation methodology, extending its application to diverse polymer materials. Using a bottom-up approach with molecular dynamics (MD) simulations, we evaluated solubility parameters and bead number density governing nonbonded interactions via the Flory-Huggins parameter and covalent-bonded interactions. Two solubility parameter methods, Hildebrand and Krevelen-Hoftyzer, were compared for DPD simulations. The Hildebrand method, utilizing MD simulations, demonstrates higher consistency and broader applicability in determining solubility parameters for all DPD particles. The DPD/MD curing reaction process was examined in three epoxy systems: DGEBA/4,4'-DDS, DGEBA/MPDA and DGEBA/DETA. Calculations for the curing profile, gelation point, radial distribution function and branch ratio were performed. Compared to MD data for DGEBA/4,4'-DDS, the maximum deviation in secondary reactions between epoxy and amine groups according to DPD simulations with Krevelen-Hoftyzer was 14.8%, while with the Hildebrand method, it was 1.7%. The accuracy of the DPD curing reaction in reproducing the structural properties verifies its expanded application to general polymeric material simulations. The proposed curing DPD simulations, with a short run time and minimal computational resources, contributes to high-throughput screening for optimal resins and investigates mesoscopic inhomogeneous structures in large resin systems.
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Affiliation(s)
- Kaiwen Li
- Department of Finemechanics, Graduate School of Engineering, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan.
| | - Gota Kikugawa
- Institute of Fluid Science, Tohoku University, 2-1-1 Katahira, Aoba-ku, Sendai 980-8577, Japan.
| | - Yoshiaki Kawagoe
- Department of Aerospace Engineering, Graduate School of Engineering, Tohoku University, 6-6-01, Aramaki Aza Aoba, Aoba-ku, Sendai, Miyagi, 980-8597, Japan
| | - Yinbo Zhao
- School of Aerospace Engineering and Applied Mechanics, Tongji University, Shanghai, 200092, PR China
| | - Tomonaga Okabe
- Department of Aerospace Engineering, Graduate School of Engineering, Tohoku University, 6-6-01, Aramaki Aza Aoba, Aoba-ku, Sendai, Miyagi, 980-8597, Japan
- Department of Materials Science and Engineering, University of Washington, BOX 352120, Seattle, WA 98195-1750, USA
- Research Center for Structural Materials, Polymer Matrix Hybrid Composite Materials Group, National Institute for Materials Science, 1-2-1 Sengen, Tsukuba, Ibaraki 305-0047, Japan
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2
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Dorenbos G. How fork-length asymmetry affects solvent connectivity and diffusion in grafted polymeric model membranes. J Chem Phys 2024; 160:064901. [PMID: 38341779 DOI: 10.1063/5.0193120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2023] [Accepted: 01/15/2024] [Indexed: 02/13/2024] Open
Abstract
The hydrophilic pore morphology and solvent diffusion within model (amphiphilic) polymer membranes are simulated by dissipative particle dynamics (DPD). The polymers are composed of a backbone of 18 covalently bonded A beads to which at regular intervals side chains are attached. The side chains are composed of linear Ap chains (i.e., -A1-A2…Ap) from which two branches, [AsC] and [ArC], split off (s ≤ r). C beads serve as functionalized hydrophilic pendent sites. The branch lengths (s + 1 and r + 1) are varied. Five repeat unit designs (with general formula A3[Ap[AsC][ArC]]) are considered: A2[A3C][A3C] (symmetric branching), A2[A2C][A4C], A2[AC][A5C], A2[C][A6C] (highly asymmetric branching), and A4[AC][A3C]. The distribution of water (W) and W diffusion through nanophase segregated hydrophilic pores is studied. For similar primary length p, an increase in side chain symmetry favors hydrophilic pore connectivity and long-range water transport. C beads located on the longer [ArC] branches reveal the highest C bead mobility and are more strongly associated with water than the C beads on the shorter [AsC] branches. The connectivity of hydrophilic (W and W + C) phases through mapped replica of selected snapshots obtained from Monte Carlo tracer diffusion simulations is in line with trends found from the W bead diffusivities during DPD simulations. The diffusive pathways for protons (H+) in proton exchange membranes and for hydronium (OH-) in anion exchange membranes are the same as for solvents. Therefore, control of the side chain architecture is an interesting design parameter for optimizing membrane conductivities.
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Affiliation(s)
- G Dorenbos
- Private research, Sano 1107-2, Belle Crea 502, 410-1118 Susono, Japan
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3
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Wen C, Odle R, Cheng S. Molecular Weight Distribution of Branched Polymers: Comparison between Monte Carlo Simulation and Flory-Stockmayer Theory. Polymers (Basel) 2023; 15:polym15071791. [PMID: 37050404 PMCID: PMC10097263 DOI: 10.3390/polym15071791] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/28/2022] [Revised: 03/16/2023] [Accepted: 04/02/2023] [Indexed: 04/08/2023] Open
Abstract
It is challenging to predict the molecular weight distribution (MWD) for a polymer with a branched architecture, though such information will significantly benefit the design and development of branched polymers with desired properties and functions. A Monte Carlo (MC) simulation method based on the Gillespie algorithm is developed to quickly compute the MWD of branched polymers formed through step-growth polymerization, with a branched polyetherimide from two backbone monomers (4,4′-bisphenol A dianhydride and m-phenylenediamine), a chain terminator (phthalic anhydride), and a branching agent (tris[4-(4-aminophenoxy)phenyl] ethane) as an example. This polymerization involves four reactions that can be all reduced to a condensation reaction between an amine group and a carboxylic anhydride group. A comparison between the MC simulation results and the predictions of the Flory-Stockmayer theory on MWD shows that the rates of the reactions are determined by the concentrations of the functional groups on the monomers involved in each reaction. It further shows that the Flory-Stockmayer theory predicts MWD well for systems below the gel point but starts to fail for systems around or above the gel point. However, for all the systems, the MC method can be used to reliably predict MWD no matter if they are below or above the gel point. Even for a macroscopic system, a converging distribution can be quickly obtained through MC simulations on a system of only a few hundred to a few thousand monomers that have the same molar ratios as in the macroscopic system.
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Affiliation(s)
- Chengyuan Wen
- Key Laboratory of Oceanographic Big Data Mining and Application of Zhejiang Province, School of Information Engineering, Zhejiang Ocean University, Zhoushan 316022, China
- Department of Physics, Center for Soft Matter and Biological Physics, and Macromolecules Innovation Institute, Virginia Tech, Blacksburg, VA 24061, USA
| | - Roy Odle
- SABIC, 1 Lexan Lane, Mt. Vernon, IN 47620, USA
| | - Shengfeng Cheng
- Department of Physics, Center for Soft Matter and Biological Physics, and Macromolecules Innovation Institute, Virginia Tech, Blacksburg, VA 24061, USA
- Department of Mechanical Engineering, Virginia Tech, Blacksburg, VA 24061, USA
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4
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Comprehensive review of the interfacial behavior of water/oil/surfactant systems using dissipative particle dynamics simulation. Adv Colloid Interface Sci 2022; 309:102774. [PMID: 36152373 DOI: 10.1016/j.cis.2022.102774] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2022] [Revised: 09/07/2022] [Accepted: 09/10/2022] [Indexed: 11/23/2022]
Abstract
A comprehensive understanding of interfacial behavior in water/oil/surfactant systems is critical to evaluating the performance of emulsions in various industries, specifically in the oil and gas industry. To gain fundamental knowledge regarding this interfacial behavior, atomistic methods, e.g., molecular dynamics (MD) simulation, can be employed; however, MD simulation cannot handle phenomena that require more than a million atoms. The coarse-grained mesoscale methods were introduced to resolve this issue. One of the most effective mesoscale coarse-grained approaches for simulating colloidal systems is dissipative particle dynamics (DPD), which bridges the gap between macroscopic time and length scales and molecular-scale simulation. This work reviews the fundamentals of DPD simulation and its progress on colloids and interface systems, especially surfactant/water/oil mixtures. The effects of temperature, salt content, a water/oil ratio, a shear rate, and a type of surfactant on the interfacial behavior in water/oil/surfactant systems using DPD simulation are evaluated. In addition, the obtained results are also investigated through the lens of the chemistry of surfactants and emulsions. The outcome of this comprehensive review demonstrates the importance of DPD simulation in various processes with a focus on the colloidal and interfacial behavior of surfactants at water-oil interfaces.
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5
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Vishnyakov A, Mao R, Kam K, Potanin A, Neimark AV. Interactions of Crosslinked Polyacrylic Acid Polyelectrolyte Gels with Nonionic and Ionic Surfactants. J Phys Chem B 2021; 125:13817-13828. [PMID: 34905689 DOI: 10.1021/acs.jpcb.1c08638] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The morphology and stability of surfactant-loaded polyelectrolyte gels are of great interest for a variety of personal care, cosmetic, and pharmaceutical products. However, the mechanisms of surfactant interactions with gel-forming polymers are poorly understood and experimentally challenging. The aim of this work is to explore in silico the specifics of surfactant absorption within polyelectrolyte gels drawing on the examples of typical non-ionic octaethylene glycol monooctyl ether (C8E8) and anionic sodium dodecyl sulfate (SDS) surfactants and polyacrylic acid modified with hydrophobic sidechains mimicking the practically important Carbopol polymer. Using the systematically parameterized coarse-grained dissipative particle dynamics models, we generate and characterize the equilibrium conformations and swelling of the polymer films in aqueous solutions with the surfactant concentrations varied up to the critical micelle concentration (cmc). We discover the striking difference in interactions of Carbopol-like polymers with nonionic and ionic surfactants under mildly acidic conditions. The sorption of C8E8 within the polymer film is found substantial. As the surfactant concentration increases, the polymer film swells and, close to cmc, becomes unstable due to the formation and growth of water pockets filled with surfactant micelles. Sorption of SDS at the same bulk concentrations is found much lower, with only about 1% of surfactant mass fraction achieved at cmc. As the SDS concentration increases further, a lamellae structure is formed within the film, which remains stable. Reduced swelling and higher stability indicate better prospects of using SDS-type surfactants with Carbopol-based gels in formulations for detergents and personal care products.
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Affiliation(s)
- Aleksey Vishnyakov
- Department of Chemical and Biochemical Engineering, Rutgers University, New Brunswick, New Jersey 08854, United States.,Skolkovo Institute of Technology, Moscow 143005, Russia
| | - Runfang Mao
- Department of Chemical and Biochemical Engineering, Rutgers University, New Brunswick, New Jersey 08854, United States
| | - Kimberly Kam
- Department of Chemical and Biochemical Engineering, Rutgers University, New Brunswick, New Jersey 08854, United States
| | - Andrei Potanin
- Colgate-Palmolive, Piscataway, New Jersey 08855, United States
| | - Alexander V Neimark
- Department of Chemical and Biochemical Engineering, Rutgers University, New Brunswick, New Jersey 08854, United States
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6
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Santo KP, Neimark AV. Dissipative particle dynamics simulations in colloid and Interface science: a review. Adv Colloid Interface Sci 2021; 298:102545. [PMID: 34757286 DOI: 10.1016/j.cis.2021.102545] [Citation(s) in RCA: 32] [Impact Index Per Article: 10.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2021] [Revised: 10/07/2021] [Accepted: 10/08/2021] [Indexed: 12/31/2022]
Abstract
Dissipative particle dynamics (DPD) is one of the most efficient mesoscale coarse-grained methodologies for modeling soft matter systems. Here, we comprehensively review the progress in theoretical formulations, parametrization strategies, and applications of DPD over the last two decades. DPD bridges the gap between the microscopic atomistic and macroscopic continuum length and time scales. Numerous efforts have been performed to improve the computational efficiency and to develop advanced versions and modifications of the original DPD framework. The progress in the parametrization techniques that can reproduce the engineering properties of experimental systems attracted a lot of interest from the industrial community longing to use DPD to characterize, help design and optimize the practical products. While there are still areas for improvements, DPD has been efficiently applied to numerous colloidal and interfacial phenomena involving phase separations, self-assembly, and transport in polymeric, surfactant, nanoparticle, and biomolecules systems.
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Affiliation(s)
- Kolattukudy P Santo
- Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, United States
| | - Alexander V Neimark
- Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, NJ 08854, United States.
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7
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Svoboda M, Jiménez S MG, Kowalski A, Cooke M, Mendoza C, Lísal M. Structural properties of cationic surfactant-fatty alcohol bilayers: insights from dissipative particle dynamics. SOFT MATTER 2021; 17:9967-9984. [PMID: 34704992 DOI: 10.1039/d1sm00850a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Bilayers, self-assembled by cationic surfactants and fatty alcohols in water, are the basic units of lamellar gel networks - creamy formulations extensively used in cosmetics and pharmaceutics. Mesoscopic modelling and study of the bilayers formed by single- or double-tail cationic surfactants (CTAC or DHDAC), and fatty alcohols (FAs) in the lamellar fluid and gel phases were employed. Fatty alcohols with alkyl tail equal to or greater than the surfactant alkyl tail, i.e., C16FA or C18FA and C22FA, were considered. A model formulation was explored with the FA concentration greater than that of the surfactant and the structure of the fluid and gel bilayers in tensionless state characterised via the density profiles across the bilayers, orientational order parameters of the surfactant and FA chains, intrinsic analysis of the bilayer interfaces, and bending rigidity. The intrinsic analysis allows identification and quantification of the coexistence of the interdigitated and non-interdigitated phases present within the gel bilayers. The FA chains were found to conform the primary scaffolding of the bilayers while the surfactant chains tessellate bilayer monolayers from their water-hydrophobic interface. Further, the overlap of the FA chains from the apposed monolayers of the fluid bilayers rises with increasing FA length. Finally, the prevalence of the non-interdigitated phase over the interdigitated phase within the gel bilayers becomes enhanced upon the FA length increase with a preference of the surfactant chains to reside in the non-interdigitated phase rather than the interdigitated phase.
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Affiliation(s)
- Martin Svoboda
- Department of Molecular and Mesoscopic Modelling, The Czech Academy of Sciences, Institute of Chemical Process Fundamentals, Rozvojová 135/1, Prague, Czech Republic.
- Department of Physics, Faculty of Science, Jan Evangelista Purkyně University in Úst nad Labem, Pasteurova 1, Úst nad Labem, Czech Republic
| | | | - Adam Kowalski
- Unilever R&D, Port Sunlight Laboratory, Quarry Road East, Bebington, Wirral CH63 3JW, UK
| | - Michael Cooke
- Unilever R&D, Port Sunlight Laboratory, Quarry Road East, Bebington, Wirral CH63 3JW, UK
| | - César Mendoza
- Unilever R&D, Port Sunlight Laboratory, Quarry Road East, Bebington, Wirral CH63 3JW, UK
| | - Martin Lísal
- Department of Molecular and Mesoscopic Modelling, The Czech Academy of Sciences, Institute of Chemical Process Fundamentals, Rozvojová 135/1, Prague, Czech Republic.
- Department of Physics, Faculty of Science, Jan Evangelista Purkyně University in Úst nad Labem, Pasteurova 1, Úst nad Labem, Czech Republic
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8
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Wang J, Li J, Wang Y, Li Z, Zhang J. Polymerization-Induced Self-Assembly of Comb-like Amphiphilic Copolymers into Onion-like Vesicles. Macromolecules 2021. [DOI: 10.1021/acs.macromol.1c01180] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Junfeng Wang
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao 266580, Shandong, China
| | - Jiawei Li
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao 266580, Shandong, China
| | - Yining Wang
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao 266580, Shandong, China
| | - Zhen Li
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao 266580, Shandong, China
| | - Jun Zhang
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao 266580, Shandong, China
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9
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Kawagoe Y, Kikugawa G, Shirasu K, Okabe T. Thermoset resin curing simulation using quantum-chemical reaction path calculation and dissipative particle dynamics. SOFT MATTER 2021; 17:6707-6717. [PMID: 34169305 DOI: 10.1039/d1sm00600b] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/13/2023]
Abstract
Thermoset resin, which is commonly used as a matrix in carbon-fiber-reinforced plastic, requires curing procedures. We propose a curing simulation technique involving a dissipative particle dynamics (DPD) simulation, which can simulate a larger system and longer time period than those of conventional all-atom molecular dynamics (AA-MD) simulations. The proposed curing DPD simulation can represent the thermoset resin exothermic reaction process precisely by considering each reactivity according to the reaction types calculated via quantum-chemical reaction path calculations. The cure reaction process given by the curing DPD simulation agrees well with that given by a conventional curing AA-MD simulation, but with run-time and computational-resource reductions of 1/480 and 1/10 times, respectively. We also conduct reverse mapping, through which the AA-MD system can be reconstructed from the DPD system, to evaluate the structural and thermomechanical properties. The X-ray diffraction pattern and thermomechanical properties of the reconstructed system agree well with those of the systems derived from the curing AA-MD simulation and experimental setup. Therefore, a cured-resin AA-MD system can be obtained from a curing DPD simulation at an extremely low computational cost, and the thermomechanical properties can be evaluated precisely using this system. The proposed curing simulation technique can be applied in high-throughput screening for better materials properties and in large system calculations.
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Affiliation(s)
- Yoshiaki Kawagoe
- Department of Aerospace Engineering, Tohoku University, Sendai 980-8579, Japan.
| | - Gota Kikugawa
- Institute of Fluid Science, Tohoku University, Sendai 980-8577, Japan.
| | - Keiichi Shirasu
- Department of Aerospace Engineering, Tohoku University, Sendai 980-8579, Japan.
| | - Tomonaga Okabe
- Department of Aerospace Engineering, Tohoku University, Sendai 980-8579, Japan. and Department of Materials Science and Engineering, University of Washington, Seattle, Washington, USA
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10
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Wu JB, Liu H, Lu ZY. Simulation Study of Process-Controlled Supramolecular Block Copolymer Phase Separation with Reversible Reaction Algorithm. Polymers (Basel) 2020; 12:E528. [PMID: 32121599 PMCID: PMC7182871 DOI: 10.3390/polym12030528] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2020] [Revised: 02/24/2020] [Accepted: 02/24/2020] [Indexed: 11/30/2022] Open
Abstract
A supramolecular diblock copolymer formed by reversible bonds between the two blocks shows a rich microphase separation behavior and has great application potential in stimuli-responsive materials. We propose a novel method to describe supramolecular reactions in dissipative particle dynamics, which includes a reversible reaction to accurately reproduce the strength, saturation, and dynamic properties of the reversible bonds in the simulations. The thermodynamic properties and dynamic processes of the supramolecular diblock copolymer melts in both equilibrium and non-equilibrium states were studied using this method. The simulation results show that the method can faithfully characterize phase behaviors and dynamic properties of supramolecular diblock copolymer melts, especially in a non-equilibrium state, which provides a novel tool to unveil self-assembly mechanism and describe the properties of supramolecular block copolymers.
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Affiliation(s)
- Jian-Bo Wu
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, Jilin University, Changchun 130023, China;
- State Key Laboratory of High-Efficiency Coal Utilization and Green Chemical Engineering, College of Chemistry and Chemical Engineering, Ningxia University, Yinchuan 750021, China
| | - Hong Liu
- Key Laboratory of Theoretical Chemistry of Environment Ministry of Education, School of Chemistry, South China Normal University, Guangzhou 510631, China
| | - Zhong-Yuan Lu
- State Key Laboratory of Supramolecular Structure and Materials, Institute of Theoretical Chemistry, Jilin University, Changchun 130023, China;
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11
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Dannenhoffer-Lafage T, Voth GA. Reactive Coarse-Grained Molecular Dynamics. J Chem Theory Comput 2020; 16:2541-2549. [DOI: 10.1021/acs.jctc.9b01140] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Thomas Dannenhoffer-Lafage
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
| | - Gregory A. Voth
- Department of Chemistry, Chicago Center for Theoretical Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, 5735 South Ellis Avenue, Chicago, Illinois 60637, United States
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12
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Müller M. Process-directed self-assembly of copolymers: Results of and challenges for simulation studies. Prog Polym Sci 2020. [DOI: 10.1016/j.progpolymsci.2019.101198] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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13
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Barnes BC, Leiter KW, Larentzos JP, Brennan JK. Forging of Hierarchical Multiscale Capabilities for Simulation of Energetic Materials. PROPELLANTS EXPLOSIVES PYROTECHNICS 2019. [DOI: 10.1002/prep.201900187] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Brian C. Barnes
- Energetic Materials Science Branch, FCDD-RLW-LB U.S. Army Research Laboratory Aberdeen Proving Ground MD 21005-5066
| | - Kenneth W. Leiter
- Simulation Sciences Branch, FCDD-RLC-NB U.S. Army Research Laboratory Aberdeen Proving Ground MD 21005-5066
| | - James P. Larentzos
- Energetic Materials Science Branch, FCDD-RLW-LB U.S. Army Research Laboratory Aberdeen Proving Ground MD 21005-5066
| | - John K. Brennan
- Energetic Materials Science Branch, FCDD-RLW-LB U.S. Army Research Laboratory Aberdeen Proving Ground MD 21005-5066
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14
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Lísal M, Larentzos JP, Sellers MS, Schweigert IV, Brennan JK. Dissipative particle dynamics with reactions: Application to RDX decomposition. J Chem Phys 2019; 151:114112. [DOI: 10.1063/1.5117904] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023] Open
Affiliation(s)
- Martin Lísal
- Department of Molecular and Mesoscopic Modelling, Institute of Chemical Process Fundamentals of the CAS, Prague, Czech Republic
- Department of Physics, Faculty of Science, J. E. Purkinje University, Ústí n. Lab., Czech Republic
| | - James P. Larentzos
- Weapons and Materials Research Directorate, U.S. Army Combat Capabilities Development Command Army Research Laboratory, Aberdeen Proving Ground, Maryland 21005-5066, USA
| | - Michael S. Sellers
- Weapons and Materials Research Directorate, U.S. Army Combat Capabilities Development Command Army Research Laboratory, Aberdeen Proving Ground, Maryland 21005-5066, USA
| | - Igor V. Schweigert
- Code 6189, Theoretical Chemistry Section, U.S. Naval Research Laboratory, Washington, DC 20375, USA
| | - John K. Brennan
- Weapons and Materials Research Directorate, U.S. Army Combat Capabilities Development Command Army Research Laboratory, Aberdeen Proving Ground, Maryland 21005-5066, USA
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15
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Jung J, Park C, Yun GJ. Free radical polymerization simulation and molecular entanglement effect on large deformation behavior. Eur Polym J 2019. [DOI: 10.1016/j.eurpolymj.2019.02.042] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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16
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Santo KP, Vishnyakov A, Kumar R, Neimark AV. Elucidating the Effects of Metal Complexation on Morphological and Rheological Properties of Polymer Solutions by a Dissipative Particle Dynamics Model. Macromolecules 2018. [DOI: 10.1021/acs.macromol.8b00493] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
Affiliation(s)
- Kolattukudy P. Santo
- Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, United States
| | - Aleksey Vishnyakov
- Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, United States
| | - Ravish Kumar
- Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, United States
| | - Alexander V. Neimark
- Department of Chemical and Biochemical Engineering, Rutgers, The State University of New Jersey, Piscataway, New Jersey 08854, United States
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17
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Nakagawa KM, Noguchi H. Bilayer sheet protrusions and budding from bilayer membranes induced by hydrolysis and condensation reactions. SOFT MATTER 2018; 14:1397-1407. [PMID: 29383371 DOI: 10.1039/c7sm02326j] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
Shape transformations of flat bilayer membranes and vesicles induced by hydrolysis and condensation reactions of amphiphilic molecules are studied using coarse-grained molecular dynamics simulations. The hydrolysis and condensation reactions result in the formation and dissociation of amphiphilic molecules, respectively. Asymmetric reactions between the inner and outer leaflets of a vesicle can transport amphiphilic molecules between the leaflets. It is found that the resulting area difference between the two leaflets induces bilayer sheet protrusion (BP) and budding at low reduced volumes of the vesicles, whereas BP only occurs at high reduced volumes. The probabilities of these two types of transformations depend on the shear viscosity of the surrounding fluids compared to the membrane as well as the reaction rates. A higher surrounding fluid viscosity leads to more BP formation. The inhomogeneous spatial distribution of the hydrophobic reaction products forms the nuclei of BP formation, and faster diffusion of the products enhances BP formation. Our results suggest that adjustment of the viscosity is important to control membrane shape transformations in experiments.
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Affiliation(s)
- Koh M Nakagawa
- Institute for Solid State Physics, University of Tokyo, Kashiwa, Chiba 277-8581, Japan.
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18
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Xu D, Ni CY, Zhu YL, Lu ZY, Xue YH, Liu H. Kinetic step-growth polymerization: A dissipative particle dynamics simulation study. J Chem Phys 2018; 148:024901. [DOI: 10.1063/1.4999050] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022] Open
Affiliation(s)
- Dan Xu
- Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry, Jilin University, Changchun 130023, China
| | - Chun-Yan Ni
- Department of Anesthesiology, Cancer Hospital of Jilin Province, Huguang Road, No. 1018, Changchun 130012, China
| | - You-Liang Zhu
- State Key Laboratory of Polymer Physics and Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, China
| | - Zhong-Yuan Lu
- State Key Laboratory of Supramolecular Structure and Materials, Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry, Jilin University, Changchun 130021, China
| | - Yao-Hong Xue
- School of Computer Science and Technology, Changchun University of Science and Technology, Changchun 130022, China
| | - Hong Liu
- State Key Laboratory of Supramolecular Structure and Materials, Laboratory of Theoretical and Computational Chemistry, Institute of Theoretical Chemistry, Jilin University, Changchun 130021, China
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität, Darmstadt 64287, Germany
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Wang J, Li J, Yao Q, Sun X, Yan Y, Zhang J. One-pot production of porous assemblies by PISA of star architecture copolymers: a simulation study. Phys Chem Chem Phys 2018; 20:10069-10076. [DOI: 10.1039/c8cp00480c] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Porous vesicles can be produced in one-pot by the PISA of star architecture copolymers.
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Affiliation(s)
- Junfeng Wang
- College of Science
- China University of Petroleum (East China)
- Qingdao
- People's Republic of China
| | - Jiawei Li
- College of Science
- China University of Petroleum (East China)
- Qingdao
- People's Republic of China
| | - Qiang Yao
- College of Science
- China University of Petroleum (East China)
- Qingdao
- People's Republic of China
| | - Xiaoli Sun
- College of Science
- China University of Petroleum (East China)
- Qingdao
- People's Republic of China
| | - Youguo Yan
- College of Science
- China University of Petroleum (East China)
- Qingdao
- People's Republic of China
| | - Jun Zhang
- College of Science
- China University of Petroleum (East China)
- Qingdao
- People's Republic of China
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20
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Sean D, Landsgesell J, Holm C. Computer Simulations of Static and Dynamical Properties of Weak Polyelectrolyte Nanogels in Salty Solutions. Gels 2017; 4:E2. [PMID: 30674778 PMCID: PMC6318681 DOI: 10.3390/gels4010002] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2017] [Revised: 12/21/2017] [Accepted: 12/23/2017] [Indexed: 12/02/2022] Open
Abstract
We investigate the chemical equilibria of weak polyelectrolyte nanogels with reaction ensemble Monte Carlo simulations. With this method, the chemical identity of the nanogel monomers can change between neutral or charged following the acid-base equilibrium reaction HA ⇌ A- + H⁺. We investigate the effect of changing the chemical equilibria by modifying the dissociation constant K a . These simulations allow for the extraction of static properties like swelling equilibria and the way in which charge-both monomer and ionic-is distributed inside the nanogel. Our findings reveal that, depending on the value of K a , added salt can either increase or decrease the gel size. Using the calculated mean-charge configurations of the nanogel from the reaction ensemble simulation as a quenched input to coupled lattice-Boltzmann molecular dynamics simulations, we investigate dynamical nanogel properties such as the electrophoretic mobility μ and the diffusion coefficient D.
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Affiliation(s)
- David Sean
- Institute for computational physics, University of Stuttgart, Allmandring 3, 70569 Stuttgart, Germany.
| | - Jonas Landsgesell
- Institute for computational physics, University of Stuttgart, Allmandring 3, 70569 Stuttgart, Germany.
| | - Christian Holm
- Institute for computational physics, University of Stuttgart, Allmandring 3, 70569 Stuttgart, Germany.
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21
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Landsgesell J, Holm C, Smiatek J. Wang-Landau Reaction Ensemble Method: Simulation of Weak Polyelectrolytes and General Acid-Base Reactions. J Chem Theory Comput 2017; 13:852-862. [PMID: 28029786 DOI: 10.1021/acs.jctc.6b00791] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
We present a novel method for the study of weak polyelectrolytes and general acid-base reactions in molecular dynamics and Monte Carlo simulations. The approach combines the advantages of the reaction ensemble and the Wang-Landau sampling method. Deprotonation and protonation reactions are simulated explicitly with the help of the reaction ensemble method, while the accurate sampling of the corresponding phase space is achieved by the Wang-Landau approach. The combination of both techniques provides a sufficient statistical accuracy such that meaningful estimates for the density of states and the partition sum can be obtained. With regard to these estimates, several thermodynamic observables like the heat capacity or reaction free energies can be calculated. We demonstrate that the computation times for the calculation of titration curves with a high statistical accuracy can be significantly decreased when compared to the original reaction ensemble method. The applicability of our approach is validated by the study of weak polyelectrolytes and their thermodynamic properties.
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Affiliation(s)
- Jonas Landsgesell
- Institute for Computational Physics, University of Stuttgart , D-70569 Stuttgart, Germany
| | - Christian Holm
- Institute for Computational Physics, University of Stuttgart , D-70569 Stuttgart, Germany
| | - Jens Smiatek
- Institute for Computational Physics, University of Stuttgart , D-70569 Stuttgart, Germany
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22
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Liu H, Zhu YL, Lu ZY, Müller-Plathe F. A kinetic chain growth algorithm in coarse-grained simulations. J Comput Chem 2016; 37:2634-2646. [DOI: 10.1002/jcc.24495] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2016] [Revised: 09/04/2016] [Accepted: 09/07/2016] [Indexed: 01/19/2023]
Affiliation(s)
- Hong Liu
- State Key Laboratory of Supramolecular Structure and Materials; Institute of Theoretical Chemistry, Jilin University; Changchun 130021 China
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität; Darmstadt 64287 Deutschland
| | - You-Liang Zhu
- State Key Laboratory of Polymer Physics and Chemistry; Changchun Institute of Applied Chemistry, Chinese Academy of Sciences; Changchun 130022 China
| | - Zhong-Yuan Lu
- State Key Laboratory of Supramolecular Structure and Materials; Institute of Theoretical Chemistry, Jilin University; Changchun 130021 China
| | - Florian Müller-Plathe
- Eduard-Zintl-Institut für Anorganische und Physikalische Chemie, Technische Universität; Darmstadt 64287 Deutschland
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24
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Lee MT, Vishnyakov A, Neimark AV. Modeling Proton Dissociation and Transfer Using Dissipative Particle Dynamics Simulation. J Chem Theory Comput 2015; 11:4395-403. [DOI: 10.1021/acs.jctc.5b00467] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Ming-Tsung Lee
- Department of Chemical and
Biochemical Engineering, Rutgers, The State University of New Jersey, 98 Brett Road, Piscataway, New Jersey 08854-8058, United States
| | - Aleksey Vishnyakov
- Department of Chemical and
Biochemical Engineering, Rutgers, The State University of New Jersey, 98 Brett Road, Piscataway, New Jersey 08854-8058, United States
| | - Alexander V. Neimark
- Department of Chemical and
Biochemical Engineering, Rutgers, The State University of New Jersey, 98 Brett Road, Piscataway, New Jersey 08854-8058, United States
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25
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Hernández-Ortiz JP, de Pablo JJ. Self-consistent description of electrokinetic phenomena in particle-based simulations. J Chem Phys 2015; 143:014108. [PMID: 26156466 PMCID: PMC4491022 DOI: 10.1063/1.4923342] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2015] [Accepted: 06/22/2015] [Indexed: 11/14/2022] Open
Abstract
A new computational method is presented for study suspensions of charged particles undergoing fluctuating hydrodynamic and electrostatic interactions. The proposed model is appropriate for polymers, proteins, and porous particles embedded in a continuum electrolyte. A self-consistent Langevin description of the particles is adopted in which hydrodynamic and electrostatic interactions are included through a Green's function formalism. An Ewald-like split is adopted in order to satisfy arbitrary boundary conditions for the Stokeslet and Poisson Green functions, thereby providing a formalism that is applicable to any geometry and that can be extended to deformable objects. The convection-diffusion equation for the continuum ions is solved simultaneously considering Nernst-Planck diffusion. The method can be applied to systems at equilibrium and far from equilibrium. Its applicability is demonstrated in the context of electrokinetic motion, where it is shown that the ionic clouds associated with individual particles can be severely altered by the flow and concentration, leading to intriguing cooperative effects.
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Affiliation(s)
- Juan P Hernández-Ortiz
- Departamento de Materiales y Minerales, Universidad Nacional de Colombia, Sede Medellín, Medellín, Colombia
| | - Juan J de Pablo
- Institute for Molecular Engineering, University of Chicago, Chicago, Illinois 60637, USA
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26
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Bourasseau E, Maillet JB, Desbiens N, Stoltz G. Microscopic Calculations of Hugoniot Curves of Neat Triaminotrinitrobenzene (TATB) and of Its Detonation Products. J Phys Chem A 2011; 115:10729-37. [DOI: 10.1021/jp2047739] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Emeric Bourasseau
- Commissariat à l’Energie Atomique, DAM, DIF, F-91297 Arpajon, France
| | | | - Nicolas Desbiens
- Commissariat à l’Energie Atomique, DAM, DIF, F-91297 Arpajon, France
| | - Gabriel Stoltz
- Université Paris Est, CERMICS, MICMAC Project-team, INRIA-Ecole des Ponts ParisTech, 6 et 8 Av. Blaise Pascal, 77455 Marne-la-Vallée Cedex 2, France
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27
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Li YC, Liu H, Huang XR, Sun CC. Evaporation- and surface-induced morphology of symmetric diblock copolymer thin films: a multibody dissipative particle dynamics study. MOLECULAR SIMULATION 2011. [DOI: 10.1080/08927022.2011.569549] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
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28
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Moučka F, Lísal M, Škvor J, Jirsák J, Nezbeda I, Smith WR. Molecular Simulation of Aqueous Electrolyte Solubility. 2. Osmotic Ensemble Monte Carlo Methodology for Free Energy and Solubility Calculations and Application to NaCl. J Phys Chem B 2011; 115:7849-61. [DOI: 10.1021/jp202054d] [Citation(s) in RCA: 90] [Impact Index Per Article: 6.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Filip Moučka
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON L1H7K4, Canada
| | - Martin Lísal
- E. Hála Laboratory of Thermodynamics, Institute of Chemical Process Fundamentals of the ASCR, v. v. i., 165 02 Prague 6, Czech Republic
| | - Jiří Škvor
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON L1H7K4, Canada
| | - Jan Jirsák
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON L1H7K4, Canada
- E. Hála Laboratory of Thermodynamics, Institute of Chemical Process Fundamentals of the ASCR, v. v. i., 165 02 Prague 6, Czech Republic
| | - Ivo Nezbeda
- E. Hála Laboratory of Thermodynamics, Institute of Chemical Process Fundamentals of the ASCR, v. v. i., 165 02 Prague 6, Czech Republic
| | - William R. Smith
- Faculty of Science, University of Ontario Institute of Technology, Oshawa, ON L1H7K4, Canada
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29
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Rosch TW, Maginn EJ. Reaction Ensemble Monte Carlo Simulation of Complex Molecular Systems. J Chem Theory Comput 2011; 7:269-79. [PMID: 26596150 DOI: 10.1021/ct100615j] [Citation(s) in RCA: 33] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Acceptance rules for reaction ensemble Monte Carlo (RxMC) simulations containing classically modeled atomistic degrees of freedom are derived for complex molecular systems where insertions and deletions are achieved gradually by utilizing the continuous fractional component (CFC) method. A self-consistent manner in which to utilize statistical mechanical data contained in ideal gas free energy parameters during RxMC moves is presented. The method is tested by applying it to two previously studied systems containing intramolecular degrees of freedom: the propene metathesis reaction and methyl-tert-butyl-ether (MTBE) synthesis. Quantitative agreement is found between the current results and those of Keil et al. (J. Chem. Phys. 2005, 122, 164705) for the propene metathesis reaction. Differences are observed between the equilibrium concentrations of the present study and those of Lísal et al. (AIChE J. 2000, 46, 866-875) for the MTBE reaction. It is shown that most of this difference can be attributed to an incorrect formulation of the Monte Carlo acceptance rule. Efficiency gains using CFC MC as opposed to single stage molecule insertions are presented.
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Affiliation(s)
- Thomas W Rosch
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, 182 Fitzpatrick Hall, Notre Dame, Indiana 46556-5637, United States
| | - Edward J Maginn
- Department of Chemical and Biomolecular Engineering, University of Notre Dame, 182 Fitzpatrick Hall, Notre Dame, Indiana 46556-5637, United States
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30
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Bourasseau E, Maillet JB. Coupling microscopic and mesoscopic scales to simulate chemical equilibrium between a nanometric carbon cluster and detonation products fluid. Phys Chem Chem Phys 2011; 13:7060-70. [DOI: 10.1039/c0cp02622k] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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31
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32
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Daoulas KC, Cavallo A, Shenhar R, Müller M. Directed assembly of supramolecular copolymers in thin films: thermodynamic and kinetic advantages. PHYSICAL REVIEW LETTERS 2010; 105:108301. [PMID: 20867553 DOI: 10.1103/physrevlett.105.108301] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2010] [Indexed: 05/29/2023]
Abstract
Using computer simulation of a coarse-grained model for supramolecular polymers, we investigate the potential of quasiblock copolymers (QBCPs) assembled on chemically patterned substrates for creating device-oriented nanostructures. QBCPs are comprised of AB diblock copolymers and supramolecular B segments that can reversibly bond to any available B terminus, on either the copolymers or the B oligomers, creating a polydisperse blend of B homopolymers, and AB and ABA copolymers. We demonstrate the defect-free replication of patterns with perpendicularly crossing, A-preferential lines, where the same QBCP can simultaneously replicate patterns differing by up to 50% in their length scales. We demonstrate how the pattern affects the distribution of molecular architectures and the key role of supramolecular associations for replicating patterns with different length scales.
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Affiliation(s)
- Kostas Ch Daoulas
- Institut für Theoretische Physik, Georg-August-Universität, 37077 Göttingen, Germany.
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33
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Hoy RS, Fredrickson GH. Thermoreversible associating polymer networks. I. Interplay of thermodynamics, chemical kinetics, and polymer physics. J Chem Phys 2009; 131:224902. [DOI: 10.1063/1.3268777] [Citation(s) in RCA: 62] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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34
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Heath Turner C, Brennan JK, Lísal M, Smith WR, Karl Johnson J, Gubbins KE. Simulation of chemical reaction equilibria by the reaction ensemble Monte Carlo method: a review†. MOLECULAR SIMULATION 2008. [DOI: 10.1080/08927020801986564] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/22/2022]
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