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For: Shi Q, Chen L, Nan G, Xu R, Yan Y. Electron transfer dynamics: Zusman equation versus exact theory. J Chem Phys 2009;130:164518. [DOI: 10.1063/1.3125003] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Bai S, Zhang S, Huang C, Shi Q. Hierarchical Equations of Motion for Quantum Chemical Dynamics: Recent Methodology Developments and Applications. Acc Chem Res 2024;57:3151-3160. [PMID: 39381954 DOI: 10.1021/acs.accounts.4c00492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/10/2024]
2
Koyanagi S, Tanimura Y. Hierarchical equations of motion for multiple baths (HEOM-MB) and their application to Carnot cycle. J Chem Phys 2024;161:162501. [PMID: 39440758 DOI: 10.1063/5.0232073] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Accepted: 10/07/2024] [Indexed: 10/25/2024]  Open
3
Zhou L, Gao X, Shuai Z. A stochastic Schrödinger equation and matrix product state approach to carrier transport in organic semiconductors with nonlocal electron-phonon interaction. J Chem Phys 2024;161:084118. [PMID: 39212211 DOI: 10.1063/5.0221143] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2024] [Accepted: 08/12/2024] [Indexed: 09/04/2024]  Open
4
Dutta R, Cabral DGA, Lyu N, Vu NP, Wang Y, Allen B, Dan X, Cortiñas RG, Khazaei P, Schäfer M, Albornoz ACCD, Smart SE, Nie S, Devoret MH, Mazziotti DA, Narang P, Wang C, Whitfield JD, Wilson AK, Hendrickson HP, Lidar DA, Pérez-Bernal F, Santos LF, Kais S, Geva E, Batista VS. Simulating Chemistry on Bosonic Quantum Devices. J Chem Theory Comput 2024;20:6426-6441. [PMID: 39068594 DOI: 10.1021/acs.jctc.4c00544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/30/2024]
5
Humphries BS, Kinslow JC, Green D, Jones GA. Role of Quantum Information in HEOM Trajectories. J Chem Theory Comput 2024;20:5383-5395. [PMID: 38889316 PMCID: PMC11238535 DOI: 10.1021/acs.jctc.4c00144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2024] [Revised: 06/04/2024] [Accepted: 06/04/2024] [Indexed: 06/20/2024]
6
Chen X, Franco I. Bexcitonics: Quasiparticle approach to open quantum dynamics. J Chem Phys 2024;160:204116. [PMID: 38814013 DOI: 10.1063/5.0198567] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2024] [Accepted: 05/09/2024] [Indexed: 05/31/2024]  Open
7
Takahashi H, Borrelli R, Gelin MF, Chen L. Finite temperature dynamics in a polarized sub-Ohmic heat bath: A hierarchical equations of motion-tensor train study. J Chem Phys 2024;160:164106. [PMID: 38656440 DOI: 10.1063/5.0202312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2024] [Accepted: 04/08/2024] [Indexed: 04/26/2024]  Open
8
Zhang S, Chen Y, Shi Q. Simulating the operation of a quantum computer in a dissipative environment. J Chem Phys 2024;160:054101. [PMID: 38299625 DOI: 10.1063/5.0185263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Accepted: 01/09/2024] [Indexed: 02/02/2024]  Open
9
Lawrence JE, Mannouch JR, Richardson JO. Recovering Marcus Theory Rates and Beyond without the Need for Decoherence Corrections: The Mapping Approach to Surface Hopping. J Phys Chem Lett 2024;15:707-716. [PMID: 38214476 PMCID: PMC10823533 DOI: 10.1021/acs.jpclett.3c03197] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2023] [Revised: 12/22/2023] [Accepted: 01/05/2024] [Indexed: 01/13/2024]
10
Amati G, Mannouch JR, Richardson JO. Detailed balance in mixed quantum-classical mapping approaches. J Chem Phys 2023;159:214114. [PMID: 38054513 DOI: 10.1063/5.0176291] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/12/2023] [Accepted: 11/07/2023] [Indexed: 12/07/2023]  Open
11
Zhang D, Zuo L, Ye L, Chen ZH, Wang Y, Xu RX, Zheng X, Yan Y. Hierarchical equations of motion approach for accurate characterization of spin excitations in quantum impurity systems. J Chem Phys 2023;158:014106. [PMID: 36610957 DOI: 10.1063/5.0131739] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]  Open
12
Fay TP. A simple improved low temperature correction for the hierarchical equations of motion. J Chem Phys 2022;157:054108. [DOI: 10.1063/5.0100365] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
13
Humphries BS, Green D, Jones GA. The influence of a Hamiltonian vibration vs a bath vibration on the 2D electronic spectra of a homodimer. J Chem Phys 2022;156:084103. [DOI: 10.1063/5.0077404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
14
Ikeda T, Nakayama A. Collective bath coordinate mapping of "hierarchy" in hierarchical equations of motion. J Chem Phys 2022;156:104104. [DOI: 10.1063/5.0082936] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
15
Li T, Yan Y, Shi Q. A low-temperature quantum Fokker-Planck equation that improvesthe numerical stability of the hierarchical equations of motion for the Brownian oscillator spectral density. J Chem Phys 2022;156:064107. [DOI: 10.1063/5.0082108] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
16
Zhang D, Ding X, Zhang HD, Zheng X, Yan Y. Adiabatic terminator for fermionic hierarchical equations of motion. CHINESE J CHEM PHYS 2021. [DOI: 10.1063/1674-0068/cjcp2110212] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
17
Seibt J, Kühn O. Strong Exciton-Vibrational Coupling in Molecular Assemblies. Dynamics Using the Polaron Transformation in HEOM Space. J Phys Chem A 2021;125:7052-7065. [PMID: 34353023 DOI: 10.1021/acs.jpca.1c02684] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
18
Yan Y, Xu M, Li T, Shi Q. Efficient propagation of the hierarchical equations of motion using the Tucker and hierarchical Tucker tensors. J Chem Phys 2021;154:194104. [PMID: 34240893 DOI: 10.1063/5.0050720] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
19
Tanimura Y. Numerically "exact" approach to open quantum dynamics: The hierarchical equations of motion (HEOM). J Chem Phys 2021;153:020901. [PMID: 32668942 DOI: 10.1063/5.0011599] [Citation(s) in RCA: 197] [Impact Index Per Article: 49.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
20
Seibt J, Kühn O. Exciton transfer using rates extracted from the “hierarchical equations of motion”. J Chem Phys 2020;153:194112. [DOI: 10.1063/5.0027373] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
21
Yan Y, Liu Y, Xing T, Shi Q. Theoretical study of excitation energy transfer and nonlinear spectroscopy of photosynthetic light‐harvesting complexes using the nonperturbative reduced dynamics method. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2020. [DOI: 10.1002/wcms.1498] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
22
Han L, Ullah A, Yan YA, Zheng X, Yan Y, Chernyak V. Stochastic equation of motion approach to fermionic dissipative dynamics. I. Formalism. J Chem Phys 2020;152:204105. [DOI: 10.1063/1.5142164] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
23
Mangaud E, Lasorne B, Atabek O, Desouter-Lecomte M. Statistical distributions of the tuning and coupling collective modes at a conical intersection using the hierarchical equations of motion. J Chem Phys 2019;151:244102. [DOI: 10.1063/1.5128852] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
24
Lawrence JE, Fletcher T, Lindoy LP, Manolopoulos DE. On the calculation of quantum mechanical electron transfer rates. J Chem Phys 2019;151:114119. [DOI: 10.1063/1.5116800] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
25
Dunn IS, Tempelaar R, Reichman DR. Removing instabilities in the hierarchical equations of motion: Exact and approximate projection approaches. J Chem Phys 2019;150:184109. [DOI: 10.1063/1.5092616] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
26
Ikeda T, Dijkstra AG, Tanimura Y. Modeling and analyzing a photo-driven molecular motor system: Ratchet dynamics and non-linear optical spectra. J Chem Phys 2019;150:114103. [DOI: 10.1063/1.5086948] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
27
Ikeda T, Tanimura Y. Low-Temperature Quantum Fokker–Planck and Smoluchowski Equations and Their Extension to Multistate Systems. J Chem Theory Comput 2019;15:2517-2534. [DOI: 10.1021/acs.jctc.8b01195] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
28
Xu M, Liu Y, Song K, Shi Q. A non-perturbative approach to simulate heterogeneous electron transfer dynamics: Effective mode treatment of the continuum electronic states. J Chem Phys 2019;150:044109. [PMID: 30709251 DOI: 10.1063/1.5046891] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
29
Wang Y, Pan ZJ, Zhang HD, Yan YJ. Dissipaton dynamics theory versus quantum master equations. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.08.046] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
30
Treatment of Herzberg-Teller and non-Condon effects in optical spectra with Hierarchical Equations of Motion. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.08.026] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
31
Liu YY, Yan YM, Xu M, Song K, Shi Q. Exact generator and its high order expansions in time-convolutionless generalized master equation: Applications to spin-boson model and excitation energy transfer. CHINESE J CHEM PHYS 2018. [DOI: 10.1063/1674-0068/31/cjcp1806146] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]
32
Han L, Zhang HD, Zheng X, Yan Y. On the exact truncation tier of fermionic hierarchical equations of motion. J Chem Phys 2018;148:234108. [PMID: 29935503 DOI: 10.1063/1.5034776] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
33
Shi Q, Xu Y, Yan Y, Xu M. Efficient propagation of the hierarchical equations of motion using the matrix product state method. J Chem Phys 2018;148:174102. [DOI: 10.1063/1.5026753] [Citation(s) in RCA: 41] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
34
Zhang HD, Xu RX, Zheng X, Yan Y. Statistical quasi-particle theory for open quantum systems. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1431407] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
35
Ikeda T, Tanimura Y. Probing photoisomerization processes by means of multi-dimensional electronic spectroscopy: The multi-state quantum hierarchical Fokker-Planck equation approach. J Chem Phys 2017;147:014102. [DOI: 10.1063/1.4989537] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
36
Song K, Shi Q. Theoretical study of photoinduced proton coupled electron transfer reaction using the non-perturbative hierarchical equations of motion method. J Chem Phys 2017. [DOI: 10.1063/1.4982928] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
37
Xu M, Song L, Song K, Shi Q. Convergence of high order perturbative expansions in open system quantum dynamics. J Chem Phys 2017;146:064102. [DOI: 10.1063/1.4974926] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
38
Ding JJ, Wang Y, Zhang HD, Xu RX, Zheng X, Yan Y. Fokker-Planck quantum master equation for mixed quantum-semiclassical dynamics. J Chem Phys 2017;146:024104. [PMID: 28088143 DOI: 10.1063/1.4973610] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
39
Song K, Song L, Shi Q. An alternative realization of the exact non-Markovian stochastic Schrödinger equation. J Chem Phys 2016;144:224105. [DOI: 10.1063/1.4953244] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
40
Ye L, Wang X, Hou D, Xu RX, Zheng X, Yan Y. HEOM-QUICK: a program for accurate, efficient, and universal characterization of strongly correlated quantum impurity systems. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2016. [DOI: 10.1002/wcms.1269] [Citation(s) in RCA: 70] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
41
Iles-Smith J, Dijkstra AG, Lambert N, Nazir A. Energy transfer in structured and unstructured environments: Master equations beyond the Born-Markov approximations. J Chem Phys 2016;144:044110. [DOI: 10.1063/1.4940218] [Citation(s) in RCA: 82] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
42
Jain A, Subotnik JE. Does Nonadiabatic Transition State Theory Make Sense Without Decoherence? J Phys Chem Lett 2015;6:4809-4814. [PMID: 26631360 DOI: 10.1021/acs.jpclett.5b02148] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
43
Xu RX, Zhang HD, Zheng X, Yan Y. Dissipaton equation of motion for system-and-bath interference dynamics. Sci China Chem 2015. [DOI: 10.1007/s11426-015-5499-2] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
44
Jain A, Subotnik JE. Surface hopping, transition state theory, and decoherence. II. Thermal rate constants and detailed balance. J Chem Phys 2015;143:134107. [DOI: 10.1063/1.4930549] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
45
Hou D, Wang S, Wang R, Ye L, Xu R, Zheng X, Yan Y. Improving the efficiency of hierarchical equations of motion approach and application to coherent dynamics in Aharonov–Bohm interferometers. J Chem Phys 2015;142:104112. [DOI: 10.1063/1.4914514] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
46
Hughes KH, Cahier B, Martinazzo R, Tamura H, Burghardt I. Non-Markovian reduced dynamics of ultrafast charge transfer at an oligothiophene–fullerene heterojunction. Chem Phys 2014. [DOI: 10.1016/j.chemphys.2014.06.015] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
47
Xie W, Xu Y, Zhu L, Shi Q. Mixed quantum classical calculation of proton transfer reaction rates: From deep tunneling to over the barrier regimes. J Chem Phys 2014;140:174105. [DOI: 10.1063/1.4873135] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
48
Mineo H, Lin SH, Fujimura Y, Xu J, Xu RX, Yan YJ. Non-Markovian response of ultrafast coherent electronic ring currents in chiral aromatic molecules in a condensed phase. J Chem Phys 2013;139:214306. [DOI: 10.1063/1.4834035] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
49
Xie W, Bai S, Zhu L, Shi Q. Calculation of Electron Transfer Rates Using Mixed Quantum Classical Approaches: Nonadiabatic Limit and Beyond. J Phys Chem A 2013;117:6196-204. [DOI: 10.1021/jp400462f] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
50
van der Vegte CP, Dijkstra AG, Knoester J, Jansen TLC. Calculating Two-Dimensional Spectra with the Mixed Quantum-Classical Ehrenfest Method. J Phys Chem A 2013;117:5970-80. [DOI: 10.1021/jp311668r] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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