1
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Yamada A. One- and two-photon excitation dynamics using semiclassical electron force field model. J Chem Phys 2024; 161:174112. [PMID: 39494793 DOI: 10.1063/5.0230185] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2024] [Accepted: 10/18/2024] [Indexed: 11/05/2024] Open
Abstract
We have extended the semiclassical-based electron force-field simulation by introducing field-electron interaction to enable us to describe linear and nonlinear electronic excitation dynamics of a condensed matter system with low computational cost. To verify the simulation method, as a first step, numerical examples of interaction dynamics of simple systems (H atom, SiH4 molecule, and Si crystalline solid) with applied short electric field pulse as well as the obtained absorbed energies by the one- and two-photon excitations have been reported along with comparison with quantum dynamics calculations as reference.
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Affiliation(s)
- Atsushi Yamada
- Department of Applied Chemistry, National Defense Academy, 1-10-20 Hashirimizu, Yokosuka, Kanagawa 239-8686, Japan
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2
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Herzfeld J. Art, fact and artifact: reflections on the cross-talk between theory and experiment. Phys Chem Chem Phys 2024; 26:9848-9855. [PMID: 38502180 DOI: 10.1039/d4cp00005f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/20/2024]
Abstract
With the increasing sophistication of each, theory and experiment have become highly specialized endeavors conducted by separate research groups. A result has been a weakening of the coupling between them and occasional hostility. Examples are given and suggestions are offered for strengthening the traditional synergy between theory and experiment.
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3
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Svensson P, Campbell T, Graziani F, Moldabekov Z, Lyu N, Batista VS, Richardson S, Vinko SM, Gregori G. Development of a new quantum trajectory molecular dynamics framework. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2023; 381:20220325. [PMID: 37393934 PMCID: PMC10315217 DOI: 10.1098/rsta.2022.0325] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/14/2022] [Accepted: 01/19/2023] [Indexed: 07/04/2023]
Abstract
An extension to the wave packet description of quantum plasmas is presented, where the wave packet can be elongated in arbitrary directions. A generalized Ewald summation is constructed for the wave packet models accounting for long-range Coulomb interactions and fermionic effects are approximated by purpose-built Pauli potentials, self-consistent with the wave packets used. We demonstrate its numerical implementation with good parallel support and close to linear scaling in particle number, used for comparisons with the more common wave packet employing isotropic states. Ground state and thermal properties are compared between the models with differences occurring primarily in the electronic subsystem. Especially, the electrical conductivity of dense hydrogen is investigated where a 15% increase in DC conductivity can be seen in our wave packet model compared with other models. This article is part of the theme issue 'Dynamic and transient processes in warm dense matter'.
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Affiliation(s)
- Pontus Svensson
- Department of Physics, University of Oxford, Parks Road, Oxford OX1 3PU, UK
| | - Thomas Campbell
- Department of Physics, University of Oxford, Parks Road, Oxford OX1 3PU, UK
| | - Frank Graziani
- Lawrence Livermore National Laboratory, Livermore, CA 94550, USA
| | - Zhandos Moldabekov
- Center of Advanced Systems Understanding (CASUS), D-02826 Görlitz, Germany
- Helmholtz-Zentrum Dresden-Rossendorf (HZDR), D-01328 Dresden, Germany
| | - Ningyi Lyu
- Department of Chemistry, Yale University, New Haven, CT 06520, USA
| | - Victor S Batista
- Department of Chemistry, Yale University, New Haven, CT 06520, USA
- Yale Quantum Institute, Yale University, New Haven, CT 06511, USA
| | | | - Sam M Vinko
- Department of Physics, University of Oxford, Parks Road, Oxford OX1 3PU, UK
- Central Laser Facility, STFC Rutherford Appleton Laboratory, Didcot OX11 0QX, UK
| | - Gianluca Gregori
- Department of Physics, University of Oxford, Parks Road, Oxford OX1 3PU, UK
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4
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White TG, Dai J, Riley D. Dynamic and transient processes in warm dense matter. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2023; 381:20220223. [PMID: 37393937 PMCID: PMC10315215 DOI: 10.1098/rsta.2022.0223] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/05/2023] [Accepted: 05/22/2023] [Indexed: 07/04/2023]
Abstract
In this paper, we discuss some of the key challenges in the study of time-dependent processes and non-equilibrium behaviour in warm dense matter. We outline some of the basic physics concepts that have underpinned the definition of warm dense matter as a subject area in its own right and then cover, in a selective, non-comprehensive manner, some of the current challenges, pointing along the way to topics covered by the papers presented in this volume. This article is part of the theme issue 'Dynamic and transient processes in warm dense matter'.
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Affiliation(s)
- Thomas G. White
- Department of Physics, University of Nevada, Reno, NV 89557, USA
| | - Jiayu Dai
- College of Science, National University of Defense Technology, Changsha 410073, People’s Republic of China
| | - David Riley
- School of Mathematics and Physics, Queen’s University Belfast, Belfast BT7 1NN, UK
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5
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Angermeier WA, Scheiner BS, Shaffer NR, White TG. Disentangling the effects of non-adiabatic interactions upon ion self-diffusion within warm dense hydrogen. PHILOSOPHICAL TRANSACTIONS. SERIES A, MATHEMATICAL, PHYSICAL, AND ENGINEERING SCIENCES 2023; 381:20230034. [PMID: 37393932 DOI: 10.1098/rsta.2023.0034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2023] [Accepted: 05/11/2023] [Indexed: 07/04/2023]
Abstract
Warm dense matter is a material state in the region of parameter space connecting condensed matter to classical plasma physics. In this intermediate regime, we investigate the significance of non-adiabatic electron-ion interactions upon ion dynamics. To disentangle non-adiabatic from adiabatic electron-ion interactions, we compare the ion self-diffusion coefficient from the non-adiabatic electron force field computational model with an adiabatic, classical molecular dynamics simulation. A classical pair potential developed through a force-matching algorithm ensures the only difference between the models is due to the electronic inertia. We implement this new method to characterize non-adiabatic effects on the self-diffusion of warm dense hydrogen over a wide range of temperatures and densities. Ultimately we show that the impact of non-adiabatic effects is negligible for equilibrium ion dynamics in warm dense hydrogen. This article is part of the theme issue 'Dynamic and transient processes in warm dense matter'.
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Affiliation(s)
| | | | - Nathaniel R Shaffer
- Laboratory for Laser Energetics, University of Rochester,Rochester, NY 14623, USA
| | - Thomas G White
- Department of Physics, University of Nevada, Reno NV 89557, USA
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6
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Li J, Song X, Li P, Herzfeld J. A Carbon Is a Carbon Is a Carbon: Orbital-Free Simulations of Hydrocarbon Chemistry without Resort to Atom Types. J Phys Chem A 2022; 126:8468-8475. [DOI: 10.1021/acs.jpca.2c05338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
- Jicun Li
- Department of Chemistry, Brandeis University, Waltham, Massachusetts02454, United States
| | - Xinrui Song
- Department of Chemistry, Brandeis University, Waltham, Massachusetts02454, United States
| | - Pinyuan Li
- Department of Chemistry, Brandeis University, Waltham, Massachusetts02454, United States
| | - Judith Herzfeld
- Department of Chemistry, Brandeis University, Waltham, Massachusetts02454, United States
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7
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Bertolini S, Jacob T. Valence energy correction for electron reactive force field. J Comput Chem 2022; 43:870-878. [PMID: 35319099 DOI: 10.1002/jcc.26844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2021] [Revised: 02/19/2022] [Accepted: 03/02/2022] [Indexed: 11/07/2022]
Abstract
Reactive force fields (ReaxFF) are a classical method to describe material properties based on a bond-order formalism, that allows bond dissociation and consequently investigations of reactive systems. Semiclassical treatment of electrons was introduced within ReaxFF simulations, better known as electron reactive force fields (eReaxFF), to explicitly treat electrons as spherical Gaussian waves. In the original version of eReaxFF, the electrons and electron-holes can lead to changes in both the bond energy and the Coulomb energy of the system. In the present study, the method was modified to allow an electron to modify the valence energy, therefore, permitting that the electron's presence modifies the three-body interactions, affecting the angle among three atoms. When a reaction path involving electron transfer is more sensitive to the geometric configuration of the molecules, corrections in the angular structure in the presence of electrons become more relevant; in this case, bond dissociation may not be enough to describe a reaction path. Consequently, the application of the extended eReaxFF method developed in this work should provide an improved description of a reaction path. As a first demonstration this semiclassical force field was parametrized for hydrogen and oxygen interactions, including water and water's ions. With the modified methodology both the overall accuracy of the force field but also the description of the angles within the molecules in presence of electrons could be improved.
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Affiliation(s)
| | - Timo Jacob
- Institute of Electrochemistry, Ulm University, Ulm, Germany
- Helmholtz-Institute Ulm (HIU) Electrochemical Energy Storage, Ulm, Germany
- Karlsruhe Institute of Technology (KIT), Karlsruhe, Germany
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8
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Cools-Ceuppens M, Dambre J, Verstraelen T. Modeling Electronic Response Properties with an Explicit-Electron Machine Learning Potential. J Chem Theory Comput 2022; 18:1672-1691. [PMID: 35171606 DOI: 10.1021/acs.jctc.1c00978] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
Explicit-electron force fields introduce electrons or electron pairs as semiclassical particles in force fields or empirical potentials, which are suitable for molecular dynamics simulations. Even though semiclassical electrons are a drastic simplification compared to a quantum-mechanical electronic wave function, they still retain a relatively detailed electronic model compared to conventional polarizable and reactive force fields. The ability of explicit-electron models to describe chemical reactions and electronic response properties has already been demonstrated, yet the description of short-range interactions for a broad range of chemical systems remains challenging. In this work, we present the electron machine learning potential (eMLP), a new explicit electron force field in which the short-range interactions are modeled with machine learning. The electron pair particles will be located at well-defined positions, derived from localized molecular orbitals or Wannier centers, naturally imposing the correct dielectric and piezoelectric behavior of the system. The eMLP is benchmarked on two newly constructed data sets: eQM7, an extension of the QM7 data set for small molecules, and a data set for the crystalline β-glycine. It is shown that the eMLP can predict dipole moments, polarizabilities, and IR-spectra of unseen molecules with high precision. Furthermore, a variety of response properties, for example, stiffness or piezoelectric constants, can be accurately reproduced.
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Affiliation(s)
- Maarten Cools-Ceuppens
- Center for Molecular Modeling (CMM), Ghent University, Technologiepark-Zwijnaarde 46, B-9052 Gent, Belgium
| | - Joni Dambre
- IDLab, Electronics and Information Systems Department, Ghent University-imec, Technologiepark-Zwijnaarde 126, B-9052 Gent, Belgium
| | - Toon Verstraelen
- Center for Molecular Modeling (CMM), Ghent University, Technologiepark-Zwijnaarde 46, B-9052 Gent, Belgium
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9
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Abdolahpur S, Bagheri N, Azami SM. Kinetic Energy Pressure and Relaxation Analysis of Intermolecular Interaction between Carbon Nanorings and Some Molecules. RUSSIAN JOURNAL OF PHYSICAL CHEMISTRY A 2021. [DOI: 10.1134/s0036024421130021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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10
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Penrod KA, Burgess MA, Akbarian D, Dabo I, Woodward WHH, van Duin ACT. Using C-DFT to develop an e-ReaxFF force field for acetophenone radical anion. J Chem Phys 2021; 155:214104. [PMID: 34879661 DOI: 10.1063/5.0064705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
Increased electricity usage over the past several decades has accelerated the need for efficient high-voltage power transmission with reliable insulating materials. Cross-linked polyethylene (XLPE) prepared via dicumyl peroxide (DCP) cross-linking has emerged as the insulator of choice for modern power cables. Although DCP cross-linking generates the desired XLPE product in high yield, other by-products are also produced. One such by-product, acetophenone, is particularly intriguing due to its aromaticity and positive electron affinity. In this work, constrained density functional theory (C-DFT) was utilized to develop an e-ReaxFF force field suitable for describing the acetophenone radical anion. Initial parameters were taken from the 2021 Akbarian e-ReaxFF force field, which was developed to describe XLPE chemistry. Then, C-DFT geometry optimizations were performed wherein an excess electron was constrained to each atom of acetophenone. The resulting C-DFT energy values for the various electronic positions were added to the e-ReaxFF training set. Next, an analogous set of structures was energy-minimized using e-ReaxFF, and equilibrium mixture compositions for the two methods were compared at multiple temperatures. Iterative fitting against C-DFT energy data was performed until satisfactory agreement was achieved. To test force field performance, molecular dynamics simulations were performed in e-ReaxFF and the resulting electronic distributions were qualitatively compared to unconstrained-DFT spin density data. By expanding our e-ReaxFF force field for XLPE, namely, adding the capability to describe acetophenone and its interactions with an excess electron, we move one step closer to a comprehensive molecular understanding of XLPE chemistry in a high-voltage power cable.
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Affiliation(s)
- Katheryn A Penrod
- Department of Chemistry, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Maximiliano Aldo Burgess
- Department of Materials Science and Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Dooman Akbarian
- Department of Mechanical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | - Ismaila Dabo
- Department of Materials Science and Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
| | | | - Adri C T van Duin
- Department of Mechanical Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, USA
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11
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Gergs T, Schmidt F, Mussenbrock T, Trieschmann J. Generalized Method for Charge-Transfer Equilibration in Reactive Molecular Dynamics. J Chem Theory Comput 2021; 17:6691-6704. [PMID: 34672567 DOI: 10.1021/acs.jctc.1c00382] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
Variable charge models (e.g., electronegativity equalization method (EEM), charge equilibration (QEq), electrostatic plus (ES+)) used in reactive molecular dynamics simulations often inherently impose a global charge transfer between atoms (approximating each system as an ideal metal). Consequently, most surface processes (e.g., adsorption, desorption, deposition, sputtering) are affected, potentially causing dubious dynamics. This issue has been addressed by certain split charge variants (i.e., split charge equilibration (SQE), redoxSQE) through a distance-dependent bond hardness, by the atomic charge ACKS2 and QTPIE models, which are based on the Kohn-Sham density functional theory, as well as by an electronegativity screening extension to the QEq model (approximating each system as an ideal insulator). In a brief review of the QEq and the QTPIE model, their applicability for studying surface interactions is assessed in this work. Following this evaluation, a revised generalization of the QEq and QTPIE models is proposed and formulated, called the charge-transfer equilibration model or in short the QTE model. This method is based on the equilibration of charge-transfer variables, which locally constrain the split charge transfer per unit time (i.e., due to overlapping orbitals) without any kind of bond hardness specification. Furthermore, a formalism relying solely on atomic charges is obtained by a respective transformation, employing an extended Lagrangian method. We moreover propose a mirror boundary condition and its implementation to accelerate surface investigations. The models proposed in this work facilitate reactive molecular dynamics simulations, which describe various materials and surface phenomena appropriately.
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Affiliation(s)
- Tobias Gergs
- Chair of Applied Electrodynamics and Plasma Technology, Department of Electrical Engineering and Information Science, Ruhr University Bochum, 44801 Bochum, Germany.,Electrodynamics and Physical Electronics Group, Brandenburg University of Technology Cottbus-Senftenberg, Siemens-Halske-Ring 14, 03046 Cottbus, Germany
| | - Frederik Schmidt
- Chair of Applied Electrodynamics and Plasma Technology, Department of Electrical Engineering and Information Science, Ruhr University Bochum, 44801 Bochum, Germany
| | - Thomas Mussenbrock
- Chair of Applied Electrodynamics and Plasma Technology, Department of Electrical Engineering and Information Science, Ruhr University Bochum, 44801 Bochum, Germany
| | - Jan Trieschmann
- Electrodynamics and Physical Electronics Group, Brandenburg University of Technology Cottbus-Senftenberg, Siemens-Halske-Ring 14, 03046 Cottbus, Germany
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12
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A Review of Recent Developments in Molecular Dynamics Simulations of the Photoelectrochemical Water Splitting Process. Catalysts 2021. [DOI: 10.3390/catal11070807] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023] Open
Abstract
In this review, we provide a short overview of the Molecular Dynamics (MD) method and how it can be used to model the water splitting process in photoelectrochemical hydrogen production. We cover classical non-reactive and reactive MD techniques as well as multiscale extensions combining classical MD with quantum chemical and continuum methods. Selected examples of MD investigations of various aqueous semiconductor interfaces with a special focus on TiO2 are discussed. Finally, we identify gaps in the current state-of-the-art where further developments will be needed for better utilization of MD techniques in the field of water splitting.
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13
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Liu Y, Liu X, Zhang S, Liu H, Mo C, Fu Z, Dai J. Molecular dynamics investigation of the stopping power of warm dense hydrogen for electrons. Phys Rev E 2021; 103:063215. [PMID: 34271766 DOI: 10.1103/physreve.103.063215] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2020] [Accepted: 06/01/2021] [Indexed: 11/07/2022]
Abstract
A variety of theoretical models have been proposed to calculate the stopping power of charged particles in matter, which is a fundamental issue in many fields. However, the approximation adopted in these theories will be challenged under warm dense matter conditions. Molecular dynamics (MD) simulation is a good way to validate the effectiveness of these models. We investigate the stopping power of warm dense hydrogen for electrons with projectile energies ranging from 400-10000 eV by means of an electron force field (eFF) method, which can effectively avoid the Coulomb catastrophe in conventional MD calculations. It is found that the stopping power of warm dense hydrogen decreases with increasing temperature of the sample at those high projectile velocities. This phenomenon could be explained by the effect of electronic structure dominated by bound electrons, which is further explicated by a modified random phase approximation (RPA) model based on local density approximation proper to inhomogeneous media. Most of the models extensively accepted by the plasma community, e.g., Landau-Spitzer model, Brown-Preston-Singleton model and RPA model, cannot well address the effect caused by bound electrons so that their predictions of stopping power contradict our result. Therefore, the eFF simulations of this paper reveals the important role played by the bound electrons on stopping power in warm dense plasmas.
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Affiliation(s)
- Yun Liu
- Department of Applied Physics, School of Physics and Electronics, Hunan University, Changsha 410082, China
| | - Xing Liu
- Center for Applied Physics and Technology, School of Physics, Peking University, Beijing 100086, China
| | - Shen Zhang
- Department of Physics, National University of Defense Technology, Changsha 410073, China
| | - Hao Liu
- Department of Applied Physics, School of Physics and Electronics, Hunan University, Changsha 410082, China
| | - Chongjie Mo
- Beijing Computational Science Research Center, Beijing 100193, China
| | - Zhenguo Fu
- Institute of Applied Physics and Computational Mathematics, Beijing 100088, China
| | - Jiayu Dai
- Department of Physics, National University of Defense Technology, Changsha 410073, China
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14
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An Investigation into the Approximations Used in Wave Packet Molecular Dynamics for the Study of Warm Dense Matter. PLASMA 2021. [DOI: 10.3390/plasma4020020] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022] Open
Abstract
Wave packet molecular dynamics (WPMD) has recently received a lot of attention as a computationally fast tool with which to study dynamical processes in warm dense matter beyond the Born–Oppenheimer approximation. These techniques, typically, employ many approximations to achieve computational efficiency while implementing semi-empirical scaling parameters to retain accuracy. We investigated three of the main approximations ubiquitous to WPMD: a restricted basis set, approximations to exchange, and the lack of correlation. We examined each of these approximations in regard to atomic and molecular hydrogen in addition to a dense hydrogen plasma. We found that the biggest improvement to WPMD comes from combining a two-Gaussian basis with a semi-empirical correction based on the valence-bond wave function. A single parameter scales this correction to match experimental pressures of dense hydrogen. Ultimately, we found that semi-empirical scaling parameters are necessary to correct for the main approximations in WPMD. However, reducing the scaling parameters for more ab-initio terms gives more accurate results and displays the underlying physics more readily.
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16
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Ma Q, Dai J, Kang D, Murillo MS, Hou Y, Zhao Z, Yuan J. Extremely Low Electron-ion Temperature Relaxation Rates in Warm Dense Hydrogen: Interplay between Quantum Electrons and Coupled Ions. PHYSICAL REVIEW LETTERS 2019; 122:015001. [PMID: 31012692 DOI: 10.1103/physrevlett.122.015001] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/02/2017] [Revised: 10/24/2018] [Indexed: 06/09/2023]
Abstract
Theoretical and computational modeling of nonequilibrium processes in warm dense matter represents a significant challenge. The electron-ion relaxation process in warm dense hydrogen is investigated here by nonequilibrium molecular dynamics using the constrained electron force field (CEFF) method. CEFF evolves wave packets that incorporate dynamic quantum diffraction that obviates the Coulomb catastrophe. Predictions from this model reveal temperature relaxation times as much as three times longer than prior molecular dynamics results based on quantum statistical potentials. Through analyses of energy distributions and mean free paths, this result can be traced to delocalization. Finally, an improved GMS [Gericke, Murillo, and Schlanges, Phys. Rev. E 78, 025401 (2008)PRESCM1539-375510.1103/PhysRevE.78.025401] model is proposed, in which the Coulomb logarithms are in good agreement with CEFF results.
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Affiliation(s)
- Qian Ma
- Department of Physics, National University of Defense Technology, Changsha, Hunan 410073, P. R. China
| | - Jiayu Dai
- Department of Physics, National University of Defense Technology, Changsha, Hunan 410073, P. R. China
| | - Dongdong Kang
- Department of Physics, National University of Defense Technology, Changsha, Hunan 410073, P. R. China
| | - M S Murillo
- Department of Computational Mathematics, Science and Engineering, Michigan State University, East Lansing, Michigan 48824, USA
| | - Yong Hou
- Department of Physics, National University of Defense Technology, Changsha, Hunan 410073, P. R. China
| | - Zengxiu Zhao
- Department of Physics, National University of Defense Technology, Changsha, Hunan 410073, P. R. China
| | - Jianmin Yuan
- Department of Physics, National University of Defense Technology, Changsha, Hunan 410073, P. R. China
- Graduate School of China Academy of Engineering Physics, Beijing 100193, P. R. China
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17
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Kang D, Dai J. Dynamic electron-ion collisions and nuclear quantum effects in quantum simulation of warm dense matter. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2018; 30:073002. [PMID: 29186001 DOI: 10.1088/1361-648x/aa9e29] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The structural, thermodynamic and transport properties of warm dense matter (WDM) are crucial to the fields of astrophysics and planet science, as well as inertial confinement fusion. WDM refers to the states of matter in a regime of temperature and density between cold condensed matter and hot ideal plasmas, where the density is from near-solid up to ten times solid density, and the temperature between 0.1 and 100 eV. In the WDM regime, matter exhibits moderately or strongly coupled, partially degenerate properties. Therefore, the methods used to deal with condensed matter and isolated atoms need to be properly validated for WDM. It is therefore a big challenge to understand WDM within a unified theoretical description with reliable accuracy. Here, we review the progress in the theoretical study of WDM with state-of-the-art simulations, i.e. quantum Langevin molecular dynamics and first principles path integral molecular dynamics. The related applications for WDM are also included.
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Affiliation(s)
- Dongdong Kang
- Department of Physics, National University of Defense Technology, Changsha, Hunan 410073, People's Republic of China
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18
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Herzfeld J, Ekesan S. Exchange potentials for semi-classical electrons. Phys Chem Chem Phys 2018; 18:30748-30753. [PMID: 27796385 DOI: 10.1039/c6cp06100a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Semi-classical electrons offer access to efficient and intuitive simulations of chemical reactions. As for any treatment of fermions, the greatest difficulty is in accounting for anti-symmetry effects. Semi-classical efforts to-date either reference Slater-determinants from ab initio treatments or adopt a heuristic approach inspired by density functional treatments. Here we revisit the problem with a combined approach. We conclude that semi-classical electrons need to reference a non-conventional wave function and find that (1) contrary to earlier suppositions, contributions from the electrostatic terms in the Hamiltonian are of similar magnitude to those from the kinetic terms and (2) the former point to a need to supplement pair potentials with 3-body potentials. The first result explains features of reported heuristic potentials, and the second provides a firm footing for extending the transferability of potentials across a wider range of elements and bonding scenarios.
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Affiliation(s)
- Judith Herzfeld
- Department of Chemistry, Brandeis University, 415 South St MS#015, Waltham, MA 02453, USA.
| | - Solen Ekesan
- Department of Chemistry, Brandeis University, 415 South St MS#015, Waltham, MA 02453, USA.
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19
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Bai C, Kale S, Herzfeld J. Chemistry with semi-classical electrons: reaction trajectories auto-generated by sub-atomistic force fields. Chem Sci 2017; 8:4203-4210. [PMID: 28626563 PMCID: PMC5468998 DOI: 10.1039/c7sc01181d] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2017] [Accepted: 04/09/2017] [Indexed: 11/21/2022] Open
Abstract
For a century now, "Lewis dots" have been a mainstay of chemical thinking, teaching and communication. However, chemists have assumed that this semi-classical picture of electrons needs to be abandoned for quantitative work, and the recourse in computational simulations has been to the extremes of first principles treatments of electrons on the one hand and force fields that avoid explicit electrons on the other hand. Given both the successes and limitations of these highly divergent approaches, it seems worth considering whether the Lewis dot picture might be made quantitative after all. Here we review progress to that end, including variations that have been implemented and examples of applications, specifically the acid-base behavior of water, several organic reactions, and electron dynamics in silicon fracture. In each case, the semi-classical approach is highly efficient and generates reasonable and readily interpreted reaction trajectories in turnkey fashion (i.e., without any input about products). Avenues for further progress are also discussed.
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Affiliation(s)
- Chen Bai
- Department of Chemistry , Brandeis University , Waltham , MA 02454 , USA .
| | - Seyit Kale
- Department of Chemistry , Brandeis University , Waltham , MA 02454 , USA .
| | - Judith Herzfeld
- Department of Chemistry , Brandeis University , Waltham , MA 02454 , USA .
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Liu H, Zhang Y, Kang W, Zhang P, Duan H, He XT. Molecular dynamics simulation of strong shock waves propagating in dense deuterium, taking into consideration effects of excited electrons. Phys Rev E 2017; 95:023201. [PMID: 28297841 DOI: 10.1103/physreve.95.023201] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2016] [Indexed: 06/06/2023]
Abstract
We present a molecular dynamics simulation of shock waves propagating in dense deuterium with the electron force field method [J. T. Su and W. A. Goddard, Phys. Rev. Lett. 99, 185003 (2007)PRLTAO0031-900710.1103/PhysRevLett.99.185003], which explicitly takes the excitation of electrons into consideration. Nonequilibrium features associated with the excitation of electrons are systematically investigated. We show that chemical bonds in D_{2} molecules lead to a more complicated shock wave structure near the shock front, compared with the results of classical molecular dynamics simulation. Charge separation can bring about accumulation of net charges on large scales, instead of the formation of a localized dipole layer, which might cause extra energy for the shock wave to propagate. In addition, the simulations also display that molecular dissociation at the shock front is the major factor that accounts for the "bump" structure in the principal Hugoniot. These results could help to build a more realistic picture of shock wave propagation in fuel materials commonly used in the inertial confinement fusion.
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Affiliation(s)
- Hao Liu
- HEDPS, Center for Applied Physics and Technology, College of Engineering, Peking University, Beijing 100871, China
| | - Yin Zhang
- Department of Mechanics and Engineering Science, College of Engineering, Peking University, Beijing 100871, China
| | - Wei Kang
- HEDPS, Center for Applied Physics and Technology, College of Engineering, Peking University, Beijing 100871, China
- Collaborative Innovation Center of IFSA (CICIFSA), Shanghai Jiao Tong University, Shanghai 200240, China
| | - Ping Zhang
- HEDPS, Center for Applied Physics and Technology, College of Engineering, Peking University, Beijing 100871, China
- Institute of Applied Physics and Computational Mathematics, Beijing 100088, China
| | - Huiling Duan
- HEDPS, Center for Applied Physics and Technology, College of Engineering, Peking University, Beijing 100871, China
- Department of Mechanics and Engineering Science, College of Engineering, Peking University, Beijing 100871, China
| | - X T He
- HEDPS, Center for Applied Physics and Technology, College of Engineering, Peking University, Beijing 100871, China
- Collaborative Innovation Center of IFSA (CICIFSA), Shanghai Jiao Tong University, Shanghai 200240, China
- Institute of Applied Physics and Computational Mathematics, Beijing 100088, China
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21
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Affiliation(s)
- F. Ghanavati
- Department of Chemistry, Yasouj University, Yasouj, Iran
| | - S. M. Azami
- Department of Chemistry, Yasouj University, Yasouj, Iran
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22
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A Fundamental Study of Nano Electrodeposition Using a Combined Molecular Dynamics and Quantum Mechanical Electron Force Field Approach. ACTA ACUST UNITED AC 2017. [DOI: 10.1016/j.promfg.2017.07.054] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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23
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Islam MM, Kolesov G, Verstraelen T, Kaxiras E, van Duin ACT. eReaxFF: A Pseudoclassical Treatment of Explicit Electrons within Reactive Force Field Simulations. J Chem Theory Comput 2016; 12:3463-72. [DOI: 10.1021/acs.jctc.6b00432] [Citation(s) in RCA: 61] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Affiliation(s)
- Md Mahbubul Islam
- Department
of Mechanical and Nuclear Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Grigory Kolesov
- John
A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Toon Verstraelen
- Center
for Molecular Modeling (CMM), Member of the QCMM Ghent−Brussels
Alliance, Ghent University, Technologiepark 903, B9052 Zwijnaarde, Belgium
| | - Efthimios Kaxiras
- John
A. Paulson School of Engineering and Applied Sciences, Harvard University, Cambridge, Massachusetts 02138, United States
| | - Adri C. T. van Duin
- Department
of Mechanical and Nuclear Engineering, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
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24
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Ekesan S, Lin DY, Herzfeld J. Magnetism and Bond Order in Diatomic Molecules Described by Semiclassical Electrons. J Phys Chem B 2016; 120:6264-9. [PMID: 27197811 DOI: 10.1021/acs.jpcb.6b02576] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
The past decade has seen the first attempts at quantifying a semiclassical description of electrons in molecules. The challenge in this endeavor is to find potentials for electron interactions that adequately capture quantum effects. As has been the case for density functionals, the challenge is particularly great for the effects that follow from the requirement for wave function antisymmetry. Here we extend our empirical inquiry into effective potentials, from prior work on the monatomic atoms and ions of nonmetals, to diatomic molecules and ions formed by these elements. Newly adjusted and trained for the longer distances relevant to diatomics, pairwise potentials are able to fit the bond orders and magnetic properties of homonuclear species. These potentials are then found to do an excellent job of predicting the magnetism of heteronuclear species. In these molecules the predicted distribution of electrons also correctly reflects increasing ionic character with increasing difference in the electronegativities of the participating atoms. The distinctive features of the current potential are discussed, along with issues calling for further improvements.
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Affiliation(s)
- Solen Ekesan
- Department of Chemistry, Brandeis University , 415 South Street MS#015, Waltham Massachusetts 02453, United States
| | - Damian Y Lin
- Department of Chemistry, Brandeis University , 415 South Street MS#015, Waltham Massachusetts 02453, United States
| | - Judith Herzfeld
- Department of Chemistry, Brandeis University , 415 South Street MS#015, Waltham Massachusetts 02453, United States
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25
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Grabowski PE, Markmann A, Morozov IV, Valuev IA, Fichtl CA, Richards DF, Batista VS, Graziani FR, Murillo MS. Wave packet spreading and localization in electron-nuclear scattering. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2013; 87:063104. [PMID: 23848786 DOI: 10.1103/physreve.87.063104] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2013] [Indexed: 06/02/2023]
Abstract
The wave packet molecular dynamics (WPMD) method provides a variational approximation to the solution of the time-dependent Schrödinger equation. Its application in the field of high-temperature dense plasmas has yielded diverging electron width (spreading), which results in diminishing electron-nuclear interactions. Electron spreading has previously been ascribed to a shortcoming of the WPMD method and has been counteracted by various heuristic additions to the models used. We employ more accurate methods to determine if spreading continues to be predicted by them and how WPMD can be improved. A scattering process involving a single dynamic electron interacting with a periodic array of statically screened protons is used as a model problem for comparison. We compare the numerically exact split operator Fourier transform method, the Wigner trajectory method, and the time-dependent variational principle (TDVP). Within the framework of the TDVP, we use the standard variational form of WPMD, the single Gaussian wave packet (WP), as well as a sum of Gaussian WPs, as in the split WP method. Wave packet spreading is predicted by all methods, so it is not the source of the unphysical diminishing of electron-nuclear interactions in WPMD at high temperatures. Instead, the Gaussian WP's inability to correctly reproduce breakup of the electron's probability density into localized density near the protons is responsible for the deviation from more accurate predictions. Extensions of WPMD must include a mechanism for breakup to occur in order to yield dynamics that lead to accurate electron densities.
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Affiliation(s)
- Paul E Grabowski
- Computational Physics and Methods Group, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, USA.
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26
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Intermolecular diatomic energies of a hydrogen dimer with non-Born–Oppenheimer nuclear and electron wave packets. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2012.02.073] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
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27
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Theofanis PL, Jaramillo-Botero A, Goddard WA, Xiao H. Nonadiabatic study of dynamic electronic effects during brittle fracture of silicon. PHYSICAL REVIEW LETTERS 2012; 108:045501. [PMID: 22400860 DOI: 10.1103/physrevlett.108.045501] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/06/2011] [Indexed: 05/31/2023]
Abstract
It has long been observed that brittle fracture of materials can lead to emission of high energy electrons and UV photons, but an atomistic description of the origin of such processes has lacked. We report here on simulations using a first-principles-based electron force field methodology with effective core potentials to describe the nonadiabatic quantum dynamics during brittle fracture in silicon crystal. Our simulations replicate the correct response of the crack tip velocity to the threshold critical energy release rate, a feat that is inaccessible to quantum mechanics methods or conventional force-field-based molecular dynamics. We also describe the crack induced voltages, current bursts, and charge carrier production observed experimentally during fracture but not previously captured in simulations. We find that strain-induced surface rearrangements and local heating cause ionization of electrons at the fracture surfaces.
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Affiliation(s)
- Patrick L Theofanis
- Division of Chemistry and Chemical Engineering, California Institute of Technology, 1200 East California Boulevard, Pasadena, California 91125, USA
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28
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Ando K. Electron wave packet modeling of chemical bonding: Floating and breathing minimal packets with perfect-pairing valence-bond spin coupling. Chem Phys Lett 2012. [DOI: 10.1016/j.cplett.2011.12.019] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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29
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High-temperature high-pressure phases of lithium from electron force field (eFF) quantum electron dynamics simulations. Proc Natl Acad Sci U S A 2011; 108:15101-5. [PMID: 21873210 DOI: 10.1073/pnas.1110322108] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
We recently developed the electron force field (eFF) method for practical nonadiabatic electron dynamics simulations of materials under extreme conditions and showed that it gave an excellent description of the shock thermodynamics of hydrogen from molecules to atoms to plasma, as well as the electron dynamics of the Auger decay in diamondoids following core electron ionization. Here we apply eFF to the shock thermodynamics of lithium metal, where we find two distinct consecutive phase changes that manifest themselves as a kink in the shock Hugoniot, previously observed experimentally, but not explained. Analyzing the atomic distribution functions, we establish that the first phase transition corresponds to (i) an fcc-to-cI16 phase transition that was observed previously in diamond anvil cell experiments at low temperature and (ii) a second phase transition that corresponds to the formation of a new amorphous phase (amor) of lithium that is distinct from normal molten lithium. The amorphous phase has enhanced valence electron-nucleus interactions due to localization of electrons into interstitial locations, along with a random connectivity distribution function. This indicates that eFF can characterize and compute the relative stability of states of matter under extreme conditions (e.g., warm dense matter).
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Jaramillo-Botero A, Su J, Qi A, Goddard WA. Large-scale, long-term nonadiabatic electron molecular dynamics for describing material properties and phenomena in extreme environments. J Comput Chem 2010; 32:497-512. [DOI: 10.1002/jcc.21637] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2010] [Revised: 06/14/2010] [Accepted: 06/23/2010] [Indexed: 01/19/2023]
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