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For: Chen L, Zheng R, Shi Q, Yan Y. Two-dimensional electronic spectra from the hierarchical equations of motion method: Application to model dimers. J Chem Phys 2010;132:024505. [DOI: 10.1063/1.3293039] [Citation(s) in RCA: 59] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
Number Cited by Other Article(s)
1
Huang C, Bai S, Shi Q. Simulation of the Pump-Probe Spectra and Excitation Energy Relaxation of the B850 Band of the LH2 Complex in Purple Bacteria. J Phys Chem B 2024. [PMID: 39059418 DOI: 10.1021/acs.jpcb.4c02059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/28/2024]
2
Sayer T, Montoya-Castillo A. Efficient formulation of multitime generalized quantum master equations: Taming the cost of simulating 2D spectra. J Chem Phys 2024;160:044108. [PMID: 38270238 DOI: 10.1063/5.0185578] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2023] [Accepted: 12/26/2023] [Indexed: 01/26/2024]  Open
3
Toutounji M. Homogeneous Dephasing in Photosynthetic Bacterial Reaction Centers: Time Correlation Function Approach. Chemphyschem 2024;25:e202300335. [PMID: 37953408 DOI: 10.1002/cphc.202300335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2023] [Revised: 11/06/2023] [Accepted: 11/07/2023] [Indexed: 11/14/2023]
4
Liu Z, Jha A, Liang XT, Duan HG. Transient chiral dynamics revealed by two-dimensional circular dichroism spectroscopy. Phys Rev E 2023;107:054119. [PMID: 37329099 DOI: 10.1103/physreve.107.054119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/25/2022] [Accepted: 05/05/2023] [Indexed: 06/18/2023]
5
Atsango AO, Montoya-Castillo A, Markland TE. An accurate and efficient Ehrenfest dynamics approach for calculating linear and nonlinear electronic spectra. J Chem Phys 2023;158:074107. [PMID: 36813724 DOI: 10.1063/5.0138671] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]  Open
6
Chen L, Bennett DIG, Eisfeld A. Calculating non-linear response functions for multi-dimensional electronic spectroscopy using dyadic non-Markovian quantum state diffusion. J Chem Phys 2022;157:114104. [DOI: 10.1063/5.0107925] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
7
Fay TP. A simple improved low temperature correction for the hierarchical equations of motion. J Chem Phys 2022;157:054108. [DOI: 10.1063/5.0100365] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
8
Loring RF. Calculating Multidimensional Optical Spectra from Classical Trajectories. Annu Rev Phys Chem 2022;73:273-297. [DOI: 10.1146/annurev-physchem-082620-021302] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
9
Kim HW, Rhee YM. Two‐dimensional electronic spectrum simulation of simple photosynthetic complex models with semi‐classical Poisson bracket mapping equation. B KOREAN CHEM SOC 2022. [DOI: 10.1002/bkcs.12469] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
10
Jansen TLC. Computational spectroscopy of complex systems. J Chem Phys 2021;155:170901. [PMID: 34742221 DOI: 10.1063/5.0064092] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]  Open
11
Seibt J, Kühn O. Strong Exciton-Vibrational Coupling in Molecular Assemblies. Dynamics Using the Polaron Transformation in HEOM Space. J Phys Chem A 2021;125:7052-7065. [PMID: 34353023 DOI: 10.1021/acs.jpca.1c02684] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
12
Polley K, Loring RF. Two-dimensional vibrational-electronic spectra with semiclassical mechanics. J Chem Phys 2021;154:194110. [PMID: 34240897 DOI: 10.1063/5.0051667] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
13
Wong MT, Cheng YC. A quantum Langevin equation approach for two-dimensional electronic spectra of coupled vibrational and electronic dynamics. J Chem Phys 2021;154:154107. [PMID: 33887933 DOI: 10.1063/5.0042848] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
14
Tanimura Y. Numerically "exact" approach to open quantum dynamics: The hierarchical equations of motion (HEOM). J Chem Phys 2021;153:020901. [PMID: 32668942 DOI: 10.1063/5.0011599] [Citation(s) in RCA: 140] [Impact Index Per Article: 46.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
15
Polley K, Loring RF. Spectroscopic response theory with classical mapping Hamiltonians. J Chem Phys 2020;153:204103. [PMID: 33261495 DOI: 10.1063/5.0029231] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
16
Polley K, Loring RF. One and Two Dimensional Vibronic Spectra for an Exciton Dimer from Classical Trajectories. J Phys Chem B 2020;124:9913-9920. [DOI: 10.1021/acs.jpcb.0c07078] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
17
Yan Y, Liu Y, Xing T, Shi Q. Theoretical study of excitation energy transfer and nonlinear spectroscopy of photosynthetic light‐harvesting complexes using the nonperturbative reduced dynamics method. WIRES COMPUTATIONAL MOLECULAR SCIENCE 2020. [DOI: 10.1002/wcms.1498] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
18
Sánchez Muñoz C, Schlawin F. Photon Correlation Spectroscopy as a Witness for Quantum Coherence. PHYSICAL REVIEW LETTERS 2020;124:203601. [PMID: 32501097 DOI: 10.1103/physrevlett.124.203601] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2020] [Accepted: 04/28/2020] [Indexed: 06/11/2023]
19
Jain A, Petit AS, Anna JM, Subotnik JE. Simple and Efficient Theoretical Approach To Compute 2D Optical Spectra. J Phys Chem B 2019;123:1602-1617. [DOI: 10.1021/acs.jpcb.8b08674] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
20
Treatment of Herzberg-Teller and non-Condon effects in optical spectra with Hierarchical Equations of Motion. Chem Phys 2018. [DOI: 10.1016/j.chemphys.2018.08.026] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
21
Ke Y, Zhao Y. Calculations of coherent two-dimensional electronic spectra using forward and backward stochastic wavefunctions. J Chem Phys 2018;149:014104. [DOI: 10.1063/1.5037684] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/15/2023]  Open
22
Han L, Zhang HD, Zheng X, Yan Y. On the exact truncation tier of fermionic hierarchical equations of motion. J Chem Phys 2018;148:234108. [PMID: 29935503 DOI: 10.1063/1.5034776] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
23
Kramer T, Noack M, Reinefeld A, Rodríguez M, Zelinskyy Y. Efficient calculation of open quantum system dynamics and time-resolved spectroscopy with distributed memory HEOM (DM-HEOM). J Comput Chem 2018;39:1779-1794. [DOI: 10.1002/jcc.25354] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2018] [Revised: 04/20/2018] [Accepted: 04/22/2018] [Indexed: 12/17/2022]
24
Fetherolf JH, Berkelbach TC. Linear and nonlinear spectroscopy from quantum master equations. J Chem Phys 2018;147:244109. [PMID: 29289132 DOI: 10.1063/1.5006824] [Citation(s) in RCA: 37] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
25
Leng X, Yan YM, Zhu RD, Song K, Weng YX, Shi Q. Simulation of the Two-Dimensional Electronic Spectroscopy and Energy Transfer Dynamics of Light-Harvesting Complex II at Ambient Temperature. J Phys Chem B 2018;122:4642-4652. [DOI: 10.1021/acs.jpcb.8b00674] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]
26
Bircher MP, Liberatore E, Browning NJ, Brickel S, Hofmann C, Patoz A, Unke OT, Zimmermann T, Chergui M, Hamm P, Keller U, Meuwly M, Woerner HJ, Vaníček J, Rothlisberger U. Nonadiabatic effects in electronic and nuclear dynamics. STRUCTURAL DYNAMICS (MELVILLE, N.Y.) 2017;4:061510. [PMID: 29376108 PMCID: PMC5760266 DOI: 10.1063/1.4996816] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2017] [Accepted: 10/19/2017] [Indexed: 05/25/2023]
27
Ikeda T, Tanimura Y. Probing photoisomerization processes by means of multi-dimensional electronic spectroscopy: The multi-state quantum hierarchical Fokker-Planck equation approach. J Chem Phys 2017;147:014102. [DOI: 10.1063/1.4989537] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
28
Ke Y, Zhao Y. Hierarchy of stochastic Schrödinger equation towards the calculation of absorption and circular dichroism spectra. J Chem Phys 2017;146:174105. [DOI: 10.1063/1.4982230] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
29
Liang XT. Long-Lived Coherence Originating from Electronic-Vibrational Couplings in Light-Harvesting Complexes. CHINESE J CHEM PHYS 2017. [DOI: 10.1063/1674-0068/30/cjcp1609188] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
30
Effects of finite laser pulse width on two-dimensional electronic spectroscopy. Chem Phys Lett 2017. [DOI: 10.1016/j.cplett.2016.11.030] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
31
Duan HG, Frey M, Thorwart M, Nalbach P. Two-dimensional photon echoes reveal non-Markovian energy transfer in an excitonic dimer. Phys Rev E 2016;94:052146. [PMID: 27967015 DOI: 10.1103/physreve.94.052146] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2016] [Indexed: 11/07/2022]
32
Chorošajev V, Gelzinis A, Valkunas L, Abramavicius D. Benchmarking the stochastic time-dependent variational approach for excitation dynamics in molecular aggregates. Chem Phys 2016. [DOI: 10.1016/j.chemphys.2016.06.014] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
33
Ding JJ, Zhang HD, Wang Y, Xu RX, Zheng X, Yan Y. Minimum-exponents ansatz for molecular dynamics and quantum dissipation. J Chem Phys 2016;145:204110. [DOI: 10.1063/1.4967964] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
34
Holdaway DIH, Collini E, Olaya-Castro A. Coherence specific signal detection via chiral pump-probe spectroscopy. J Chem Phys 2016;144:194112. [DOI: 10.1063/1.4948943] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
35
Liang XT. Simulating signatures of two-dimensional electronic spectra of the Fenna-Matthews-Olson complex: By using a numerical path integral. J Chem Phys 2015;141:044116. [PMID: 25084890 DOI: 10.1063/1.4890533] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
36
Jing YY, Song K, Bai SM, Shi Q. Linear and Nonlinear Spectra in Photosynthetic Light Harvesting Complexes: Benchmark Tests of Modified Redfield Method. CHINESE J CHEM PHYS 2015. [DOI: 10.1063/1674-0068/28/cjcp1506126] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]
37
Yeh SH, Kais S. Simulated two-dimensional electronic spectroscopy of the eight-bacteriochlorophyll FMO complex. J Chem Phys 2015;141:234105. [PMID: 25527917 DOI: 10.1063/1.4903546] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
38
Liu H, Zhu L, Bai S, Shi Q. Reduced quantum dynamics with arbitrary bath spectral densities: hierarchical equations of motion based on several different bath decomposition schemes. J Chem Phys 2015;140:134106. [PMID: 24712779 DOI: 10.1063/1.4870035] [Citation(s) in RCA: 87] [Impact Index Per Article: 9.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
39
Leng X, Liang XT. Simulation of two-dimensional electronic spectra of phycoerythrin 545 at ambient temperature. J Phys Chem B 2014;118:12366-70. [PMID: 25299464 DOI: 10.1021/jp506974r] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
40
Grossmann F. Quantum effects in intermediate-temperature dipole-dipole correlation-functions in the presence of an environment. J Chem Phys 2014;141:144305. [DOI: 10.1063/1.4896835] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022]  Open
41
Yan YA, Cai S. Exciton Seebeck effect in molecular systems. J Chem Phys 2014;141:054105. [DOI: 10.1063/1.4891798] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
42
Tanimura Y. Reduced hierarchical equations of motion in real and imaginary time: Correlated initial states and thermodynamic quantities. J Chem Phys 2014;141:044114. [DOI: 10.1063/1.4890441] [Citation(s) in RCA: 121] [Impact Index Per Article: 12.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
43
Mineo H, Lin SH, Fujimura Y, Xu J, Xu RX, Yan YJ. Non-Markovian response of ultrafast coherent electronic ring currents in chiral aromatic molecules in a condensed phase. J Chem Phys 2013;139:214306. [DOI: 10.1063/1.4834035] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
44
Tempelaar R, van der Vegte CP, Knoester J, Jansen TLC. Surface hopping modeling of two-dimensional spectra. J Chem Phys 2013;138:164106. [DOI: 10.1063/1.4801519] [Citation(s) in RCA: 50] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
45
van der Vegte CP, Dijkstra AG, Knoester J, Jansen TLC. Calculating Two-Dimensional Spectra with the Mixed Quantum-Classical Ehrenfest Method. J Phys Chem A 2013;117:5970-80. [DOI: 10.1021/jp311668r] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
46
Jing Y, Chen L, Bai S, Shi Q. Equilibrium excited state and emission spectra of molecular aggregates from the hierarchical equations of motion approach. J Chem Phys 2013;138:045101. [DOI: 10.1063/1.4775843] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/20/2022]  Open
47
Zhu L, Liu H, Xie W, Shi Q. Explicit system-bath correlation calculated using the hierarchical equations of motion method. J Chem Phys 2012. [DOI: 10.1063/1.4766358] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
48
Ding JJ, Xu RX, Yan Y. Optimizing hierarchical equations of motion for quantum dissipation and quantifying quantum bath effects on quantum transfer mechanisms. J Chem Phys 2012;136:224103. [PMID: 22713032 DOI: 10.1063/1.4724193] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
49
Bixner O, Lukeš V, Mančal T, Hauer J, Milota F, Fischer M, Pugliesi I, Bradler M, Schmid W, Riedle E, Kauffmann HF, Christensson N. Ultrafast photo-induced charge transfer unveiled by two-dimensional electronic spectroscopy. J Chem Phys 2012;136:204503. [DOI: 10.1063/1.4720492] [Citation(s) in RCA: 47] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]  Open
50
Seibt J, Eisfeld A. Intermolecular torsional motion of a π-aggregated dimer probed by two-dimensional electronic spectroscopy. J Chem Phys 2012;136:024109. [DOI: 10.1063/1.3674993] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/04/2023]  Open
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