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Krupa J, Kosendiak I, Wierzejewska M, Lundell J. Experimental and theoretical investigation of hydrogen bonded complexes between glycolic acid and water. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024; 325:125081. [PMID: 39241396 DOI: 10.1016/j.saa.2024.125081] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/19/2024] [Revised: 07/30/2024] [Accepted: 08/29/2024] [Indexed: 09/09/2024]
Abstract
Theoretical MP2 and B3LYPD3 calculations, as well as experimental matrix isolation infrared spectroscopy studies, were used to investigate the 1:1 complexes formed between glycolic acid and water. Out of five computationally predicted forms of GA⋯H2O complex the most stable one was detected experimentally in solid argon. This structure is characterized by two intermolecular OH⋯O hydrogen bonds depicting a six-member ring in which water acts both as a proton acceptor and as a proton donor. Two other structures with the alcoholic OH group acting as a proton donor are also tentatively suggested to be present in solid argon.
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Affiliation(s)
- Justyna Krupa
- Faculty of Chemistry, University of Wrocław, Joliot-Curie 14, 50-383 Wrocław, Poland.
| | - Iwona Kosendiak
- Faculty of Chemistry, University of Wrocław, Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Maria Wierzejewska
- Faculty of Chemistry, University of Wrocław, Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Jan Lundell
- Department of Chemistry, University of Jyväskylä, FI-40014 Jyväskylä, Finland.
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2
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Krupa J, Kosendiak I, Wierzejewska M, Ahokas J, Lundell J. UV laser induced photolysis of glycolic acid isolated in argon matrices. J Photochem Photobiol A Chem 2021. [DOI: 10.1016/j.jphotochem.2021.113236] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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3
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Walski T, Dąbrowska K, Drohomirecka A, Jędruchniewicz N, Trochanowska-Pauk N, Witkiewicz W, Komorowska M. The effect of red-to-near-infrared (R/NIR) irradiation on inflammatory processes. Int J Radiat Biol 2019; 95:1326-1336. [PMID: 31170016 DOI: 10.1080/09553002.2019.1625464] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Introduction: Near-infrared (NIR) and red-to-near-infrared (R/NIR) radiation are increasingly applied for therapeutic use. R/NIR-employing therapies aim to stimulate healing, prevent tissue necrosis, increase mitochondrial function, and improve blood flow and tissue oxygenation. The wide range of applications of this radiation raises questions concerning the effects of R/NIR on the immune system. Methods: In this review, we discuss the potential effects of exposure to R/NIR light on immune cells in the context of physical parameters of light. Discussion: The effects that R/NIR may induce in immune cells typically involve the production of reactive oxygen species (ROS), nitrogen oxide (NO), or interleukins. Production of ROS after exposure to R/NIR can either be inhibited or to some extent increased, which suggests that detailed conditions of experiments, such as the spectrum of radiation, irradiance, exposure time, determine the outcome of the treatment. However, a wide range of immune cell studies have demonstrated that exposure to R/NIR most often has an anti-inflammatory effect. Finally, photobiomodulation molecular mechanism with particular attention to the role of interfacial water structure changes for cell physiology and regulation of the inflammatory process was described. Conclusions: Optimization of light parameters allows R/NIR to act as an anti-inflammatory agent in a wide range of medical applications.
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Affiliation(s)
- Tomasz Walski
- Research and Development Center, Regional Specialist Hospital , Wrocław , Poland.,Department of Biomedical Engineering, Faculty of Fundamental Problems of Technology, Wrocław University of Science and Technology , Wrocław , Poland
| | - Krystyna Dąbrowska
- Research and Development Center, Regional Specialist Hospital , Wrocław , Poland.,Institute of Immunology and Experimental Therapy, Polish Academy of Sciences , Wrocław , Poland
| | - Anna Drohomirecka
- Department of Heart Failure and Transplantology, Institute of Cardiology , Warsaw , Poland
| | | | - Natalia Trochanowska-Pauk
- Research and Development Center, Regional Specialist Hospital , Wrocław , Poland.,Department of Biomedical Engineering, Faculty of Fundamental Problems of Technology, Wrocław University of Science and Technology , Wrocław , Poland
| | - Wojciech Witkiewicz
- Research and Development Center, Regional Specialist Hospital , Wrocław , Poland
| | - Małgorzata Komorowska
- Research and Development Center, Regional Specialist Hospital , Wrocław , Poland.,Department of Biomedical Engineering, Faculty of Fundamental Problems of Technology, Wrocław University of Science and Technology , Wrocław , Poland
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4
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Samanta BR, Sutradhar S, Fernando R, Krylov AI, Reisler H. Electronic Structure and Rydberg–Core Interactions in Hydroxycarbene and Methylhydroxycarbene. J Phys Chem A 2018; 122:6176-6182. [DOI: 10.1021/acs.jpca.8b04424] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Bibek R. Samanta
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Subhasish Sutradhar
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Ravin Fernando
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Anna I. Krylov
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
| | - Hanna Reisler
- Department of Chemistry, University of Southern California, Los Angeles, California 90089-0482, United States
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5
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Bersenkowitsch NK, Ončák M, van der Linde C, Herburger A, Beyer MK. Photochemistry of glyoxylate embedded in sodium chloride clusters, a laboratory model for tropospheric sea-salt aerosols. Phys Chem Chem Phys 2018; 20:8143-8151. [PMID: 29517776 PMCID: PMC5885371 DOI: 10.1039/c8cp00399h] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Although marine aerosols undergo extensive photochemical processing in the troposphere, a molecular level understanding of the elementary steps involved in these complex reaction sequences is still missing.
Although marine aerosols undergo extensive photochemical processing in the troposphere, a molecular level understanding of the elementary steps involved in these complex reaction sequences is still missing. As a defined laboratory model system, the photodissociation of sea salt clusters doped with glyoxylate, [NanCln–2(C2HO3)]+, n = 5–11, is studied by a combination of mass spectrometry, laser spectroscopy and ab initio calculations. Glyoxylate acts as a chromophore, absorbing light below 400 nm via two absorption bands centered at about 346 and 231 nm. Cluster fragmentation dominates, which corresponds to internal conversion of the excited state energy into vibrational modes of the electronic ground state and subsequent unimolecular dissociation. Photochemical dissociation pathways in electronically excited states include CO and HCO elimination, leading to [Nan–xCln–x–2HCOO]+ and [NanCln–2COO˙]+ with typical quantum yields in the range of 1–3% and 5–10%, respectively, for n = 5. The latter species contains CO2˙– stabilized by the salt environment. The comparison of different cluster sizes shows that the fragments containing a carbon dioxide radical anion appear in a broad spectral region of 310–380 nm. This suggests that the elusive CO2˙– species may be formed by natural processes in the troposphere. Based on the photochemical cross sections obtained here, the photolysis lifetime of glyoxylate in a dry marine aerosol is estimated as 10 h. Quantum chemical calculations show that dissociation along the C–C bond in glyoxylic acid as well as glyoxylate embedded in the salt cluster occurs after reaching the S1/S0 conical intersection, while this conical intersection is absent in free glyoxylate ions.
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Affiliation(s)
- Nina K Bersenkowitsch
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Milan Ončák
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Christian van der Linde
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Andreas Herburger
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
| | - Martin K Beyer
- Institut für Ionenphysik und Angewandte Physik, Universität Innsbruck, Technikerstraße 25, 6020 Innsbruck, Austria.
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Schnitzler EG, Badran C, Jäger W. Contrasting Effects of Water on the Barriers to Decarboxylation of Two Oxalic Acid Monohydrates: A Combined Rotational Spectroscopic and Ab Initio Study. J Phys Chem Lett 2016; 7:1143-1147. [PMID: 26963633 DOI: 10.1021/acs.jpclett.6b00278] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
Using rotational spectroscopy, we have observed two isomers of the monohydrate of oxalic acid, the most abundant dicarboxylic acid in the atmosphere. In the lowest-energy isomer, water hydrogen-bonds to both carboxylic acid groups, and the barrier to decarboxylation decreases. In the second isomer, water bonds to only one carboxylic acid group, and the barrier increases. Though the lower barrier in the former is not unequivocal evidence that water acts as a photocatalyst, the higher barrier in the latter indicates that water acts as an inhibitor in this topology. Oxalic acid is unique among dicarboxylic acids: for the higher homologues calculated, the inhibiting topology of the monohydrate is lowest in energy and most abundant under atmospheric conditions. Consequently, oxalic acid is the only dicarboxylic acid for which single-water catalysis of overtone-induced decarboxylation in the atmosphere is plausible.
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Affiliation(s)
- Elijah G Schnitzler
- Department of Chemistry, University of Alberta , Edmonton, Alberta T6G 2G2, Canada
| | - Courtenay Badran
- Department of Chemistry, University of Alberta , Edmonton, Alberta T6G 2G2, Canada
| | - Wolfgang Jäger
- Department of Chemistry, University of Alberta , Edmonton, Alberta T6G 2G2, Canada
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Schrøder SD, Wallberg JH, Kroll JA, Maroun Z, Vaida V, Kjaergaard HG. Intramolecular Hydrogen Bonding in Methyl Lactate. J Phys Chem A 2015; 119:9692-702. [DOI: 10.1021/acs.jpca.5b04812] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Sidsel D. Schrøder
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Jens H. Wallberg
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Jay A. Kroll
- Department
of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado 80309, United States
| | - Zeina Maroun
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
| | - Veronica Vaida
- Department
of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, United States
- Cooperative Institute for Research in Environmental Sciences, Boulder, Colorado 80309, United States
| | - Henrik G. Kjaergaard
- Department
of Chemistry, University of Copenhagen, Universitetsparken 5, DK-2100 Copenhagen Ø, Denmark
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Reed Harris AE, Ervens B, Shoemaker RK, Kroll JA, Rapf RJ, Griffith EC, Monod A, Vaida V. Photochemical Kinetics of Pyruvic Acid in Aqueous Solution. J Phys Chem A 2014; 118:8505-16. [DOI: 10.1021/jp502186q] [Citation(s) in RCA: 73] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Allison E. Reed Harris
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Barbara Ervens
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- Chemical
Sciences Division, Earth System Research Laboratory, National Oceanic and Atmospheric Administration, Boulder, Colorado 80305, United States
| | - Richard K. Shoemaker
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Jay A. Kroll
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Rebecca J. Rapf
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Elizabeth C. Griffith
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
| | - Anne Monod
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- Aix Marseille Université, CNRS, LCE FRE 3416, 13331 Marseille, France
| | - Veronica Vaida
- Department
of Chemistry and Biochemistry, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
- CIRES, University of Colorado, UCB 215, Boulder, Colorado 80309, United States,
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Olbert-Majkut A, Lundell J, Wierzejewska M. Light-Induced Opening and Closing of the Intramolecular Hydrogen Bond in Glyoxylic Acid. J Phys Chem A 2013; 118:350-7. [DOI: 10.1021/jp409982f] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Adriana Olbert-Majkut
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
| | - Jan Lundell
- Department
of Chemistry, University of Jyväskylä, P.O. Box 35, FI-40014 Jyväskylä, Finland
| | - Maria Wierzejewska
- Faculty of Chemistry, University of Wrocław, F. Joliot-Curie 14, 50-383 Wrocław, Poland
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10
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Olbert-Majkut A, Ahokas J, Pettersson M, Lundell J. Visible Light-Driven Chemistry of Oxalic Acid in Solid Argon, Probed by Raman Spectroscopy. J Phys Chem A 2013; 117:1492-502. [DOI: 10.1021/jp311749z] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Adriana Olbert-Majkut
- Faculty of Chemistry, Wrocław University, F. Joliot-Curie 14, 50-383
Wrocław, Poland
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11
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Herman M, Perry DS. Molecular spectroscopy and dynamics: a polyad-based perspective. Phys Chem Chem Phys 2013; 15:9970-93. [DOI: 10.1039/c3cp50463h] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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12
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Kramer ZC, Takahashi K, Vaida V, Skodje RT. Will water act as a photocatalyst for cluster phase chemical reactions? Vibrational overtone-induced dehydration reaction of methanediol. J Chem Phys 2012; 136:164302. [DOI: 10.1063/1.4704767] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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13
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Larsen MC, Vaida V. Near Infrared Photochemistry of Pyruvic Acid in Aqueous Solution. J Phys Chem A 2012; 116:5840-6. [DOI: 10.1021/jp2087972] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Molly C. Larsen
- Department of Chemistry and Biochemistry, University of Colorado Boulder, Boulder,
Colorado 80309, United States
| | - Veronica Vaida
- Department of Chemistry and Biochemistry, University of Colorado Boulder, Boulder,
Colorado 80309, United States
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Hazra MK, Kuang X, Sinha A. Influence of Intramolecular Hydrogen Bonding on OH-Stretching Overtone Intensities and Band Positions in Peroxyacetic Acid. J Phys Chem A 2011; 116:5784-95. [DOI: 10.1021/jp206637t] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Montu K. Hazra
- Department of Chemistry and Biochemistry, University of California, San Diego La Jolla, California 92093-0314, United States
| | | | - Amitabha Sinha
- Department of Chemistry and Biochemistry, University of California, San Diego La Jolla, California 92093-0314, United States
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Affiliation(s)
- Veronica Vaida
- Department of Chemistry and Biochemistry, CIRES, University of Colorado, Boulder, Colorado 80309-0215, USA
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Hazra MK, Sinha A. Spectra and Integrated Band Intensities of the Low Order OH Stretching Overtones in Peroxyformic Acid: An Atmospheric Molecule with Prototypical Intramolecular Hydrogen Bonding. J Phys Chem A 2011; 115:5294-306. [DOI: 10.1021/jp112028c] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
- Montu K. Hazra
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093-0314, United States
| | - Amitabha Sinha
- Department of Chemistry and Biochemistry, University of California, San Diego, La Jolla, California 92093-0314, United States
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Begashaw I, Fiddler MN, Bililign S, Brown SS. Measurement of the Fourth O−H Overtone Absorption Cross Section in Acetic Acid Using Cavity Ring-Down Spectroscopy. J Phys Chem A 2011; 115:753-61. [DOI: 10.1021/jp1087338] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Israel Begashaw
- Department of Physics and NOAA-ISET Center, North Carolina Agricultural and Technical State University, Greensboro, North Carolina 27411
| | - Marc N. Fiddler
- Department of Physics and NOAA-ISET Center, North Carolina Agricultural and Technical State University, Greensboro, North Carolina 27411
| | - Solomon Bililign
- Department of Physics and NOAA-ISET Center, North Carolina Agricultural and Technical State University, Greensboro, North Carolina 27411
| | - Steven S. Brown
- Earth System Research Laboratory, Chemical Science Division, National Oceanic and Atmospheric Administration, Boulder, Colorado 80305
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Meng K, Wang J. Anharmonic overtone and combination states of glycine and two model peptides examined by vibrational self-consistent field theory. Phys Chem Chem Phys 2011; 13:2001-13. [DOI: 10.1039/c0cp01177k] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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19
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Kramer ZC, Takahashi K, Skodje RT. Water Catalysis and Anticatalysis in Photochemical Reactions: Observation of a Delayed Threshold Effect in the Reaction Quantum Yield. J Am Chem Soc 2010; 132:15154-7. [DOI: 10.1021/ja107335t] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Zeb C. Kramer
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, and Key State Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, CAS, Dalian, China
| | - Kaito Takahashi
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, and Key State Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, CAS, Dalian, China
| | - Rex T. Skodje
- Department of Chemistry and Biochemistry, University of Colorado, Boulder, Colorado 80309-0215, and Key State Laboratory of Molecular Reaction Dynamics, Dalian Institute of Chemical Physics, CAS, Dalian, China
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Takahashi K. Theoretical study on the effect of intramolecular hydrogen bonding on OH stretching overtone decay lifetime of ethylene glycol, 1,3-propanediol, and 1,4-butanediol. Phys Chem Chem Phys 2010; 12:13950-61. [DOI: 10.1039/c0cp00788a] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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