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Wachsmuth D, Jahn MK, Blanco S, Gigosos MA, Lesarri A, Grabow JU. Inversion of Bicyclic Decanes: Rotational Spectra of the Trans
and Double Cis
Conformations of 2-Decalone. Chemphyschem 2017; 18:3620-3624. [DOI: 10.1002/cphc.201700848] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/30/2017] [Revised: 09/08/2017] [Indexed: 11/09/2022]
Affiliation(s)
- Dennis Wachsmuth
- Institut für Physikalische Chemie & Elektrochemie, Lehrgebiet A; Gottfried-Wilhelm-Leibniz-Universität; Callinstrasse 3A, D- 30167 Hannover Germany
| | - Michaela K. Jahn
- Institut für Physikalische Chemie & Elektrochemie, Lehrgebiet A; Gottfried-Wilhelm-Leibniz-Universität; Callinstrasse 3A, D- 30167 Hannover Germany
| | - Susana Blanco
- Departamento de Química Física y Química Inorgánica; Universidad de Valladolid; Paseo de Belén, 7 47011 Valladolid Spain
| | - Marco A. Gigosos
- Departamento de Física Teórica, Atómica y Óptica; Universidad de Valladolid; Paseo de Belén, 7 47011 Valladolid Spain
| | - Alberto Lesarri
- Departamento de Química Física y Química Inorgánica; Universidad de Valladolid; Paseo de Belén, 7 47011 Valladolid Spain
| | - Jens-Uwe Grabow
- Institut für Physikalische Chemie & Elektrochemie, Lehrgebiet A; Gottfried-Wilhelm-Leibniz-Universität; Callinstrasse 3A, D- 30167 Hannover Germany
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2
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Gronowski M, Eluszkiewicz P, Custer T. Structure and Spectroscopy of C2HNO Isomers. J Phys Chem A 2017; 121:3263-3273. [DOI: 10.1021/acs.jpca.6b12609] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Marcin Gronowski
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Piotr Eluszkiewicz
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
| | - Thomas Custer
- Institute of Physical Chemistry, Polish Academy of Sciences, Kasprzaka 44/52, 01-224 Warsaw, Poland
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3
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Pérez C, Caballero-Mancebo E, Lesarri A, Cocinero EJ, Alkorta I, Suenram RD, Grabow JU, Pate BH. The Conformational Map of Volatile Anesthetics: Enflurane Revisited. Chemistry 2016; 22:9804-11. [PMID: 27258776 DOI: 10.1002/chem.201601201] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2016] [Indexed: 11/10/2022]
Abstract
Previous ambiguities in the conformational and structural landscape of the volatile anesthetic enflurane have been solved combining microwave spectroscopy in a jet expansion and ab initio calculations. The broadband (2-18 GHz) rotational spectra identified three different rotamers, sharing a common trans ether skeleton but differing in the ±gauche/trans position of the terminal chlorine atom. For each chlorine conformation two different gauche orientations were predicted for the opposite difluoromethyl group, but only one is experimentally observable due to collisional relaxation in the jet. The experimental dataset comprised nine different isotopologues ((35) Cl, (37) Cl, (13) C) and a large number (>6500) of rotational transitions. The inertial data provided structural information using the substitution and effective procedures. The structural preferences were rationalized with additional ab initio, natural-bond-orbital and non-covalent-interaction analysis, which suggest that plausible anomeric effects at the difluoromethyl group could be overridden by other intramolecular effects. The difluoromethyl orientation thus reflects a minimization of inter-fluorine repulsions while maximizing F⋅⋅⋅H attractive interactions. A comparison with previous electron diffraction and spectroscopic data in the gas and condensed phases finally resulted in a comprehensive description of this ether, completing a rotational description of the most common multi-halogenated anesthetics.
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Affiliation(s)
- Cristóbal Pérez
- Department of Chemistry, University of Virginia, McCormick Rd., Charlottesville, Virginia, 22904, USA.,Max-Planck Institute for the Structure and Dynamics of Matter, Luruper Chaussee 149, 22761, Hamburg, Germany
| | - Elena Caballero-Mancebo
- Departamento de Química Física y Química Inorgánica, Universidad de Valladolid, 47011, Valladolid, Spain
| | - Alberto Lesarri
- Departamento de Química Física y Química Inorgánica, Universidad de Valladolid, 47011, Valladolid, Spain.
| | - Emilio J Cocinero
- Departamento de Química Física, Universidad del País Vasco, Ap. 644, 48080, Bilbao, Spain
| | - Ibon Alkorta
- Instituto de Química Médica, CSIC, Madrid, Spain
| | - Richard D Suenram
- Department of Chemistry, University of Virginia, McCormick Rd., Charlottesville, Virginia, 22904, USA
| | - Jens-Uwe Grabow
- Institut für Physikalische Chemie and Elektrochemie, Lehrgebiet A, Gottfried-Wilhelm-Leibniz-Universität, Callinstrasse 3A, 30167, Hannover, Germany
| | - Brooks H Pate
- Department of Chemistry, University of Virginia, McCormick Rd., Charlottesville, Virginia, 22904, USA.
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4
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Favero LB, Uriarte I, Spada L, Écija P, Calabrese C, Caminati W, Cocinero EJ. Solving the Tautomeric Equilibrium of Purine through Analysis of the Complex Hyperfine Structure of the Four (14)N Nuclei. J Phys Chem Lett 2016; 7:1187-1191. [PMID: 26963732 DOI: 10.1021/acs.jpclett.6b00374] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
The rotational spectra of two tautomers of purine have been measured by pulsed jet Fourier transform microwave spectroscopy coupled to a UV ultrafast vaporization system. The population ratio of the two main tautomers [N(7)H]/[N(9)H] is about 1/40 in the gas phase. It contrasts with the solid state where only the N(7)H species is present, or in solution where a mixture of both tautomers is observed. For both species, a full quadrupolar hyperfine analysis has been performed. This has led to the determination of the full sets of diagonal quadrupole coupling constants of the four (14)N atoms, which have provided crucial information for the unambiguous identification of both species. This work shows the great potential of microwave spectroscopy to study isolated biomolecules in the gas phase. All the work was supported by theoretical calculations.
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Affiliation(s)
- Laura B Favero
- Istituto per lo Studio dei Materiali Nanostrutturati (ISMN), Sezione di Bologna CNR, Via Gobetti 101, I-40129, Bologna, Italy
| | - Iciar Uriarte
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU) , Apartado 644, E-48080 Bilbao, Spain
| | - Lorenzo Spada
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU) , Apartado 644, E-48080 Bilbao, Spain
- Dipartimento di Chimica, "G. Ciamician" dell'Università , Via Selmi 2, I-40126 Bologna, Italy
| | - Patricia Écija
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU) , Apartado 644, E-48080 Bilbao, Spain
| | - Camilla Calabrese
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU) , Apartado 644, E-48080 Bilbao, Spain
- Dipartimento di Chimica, "G. Ciamician" dell'Università , Via Selmi 2, I-40126 Bologna, Italy
| | - Walther Caminati
- Dipartimento di Chimica, "G. Ciamician" dell'Università , Via Selmi 2, I-40126 Bologna, Italy
| | - Emilio J Cocinero
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU) , Apartado 644, E-48080 Bilbao, Spain
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Écija P, Uriarte I, Basterretxea FJ, Millán J, Lesarri A, Fernández JA, Cocinero EJ. Structural distortion of the epoxy groups in norbornanes: a rotational study of exo-2,3-epoxynorbornane. Chemphyschem 2015; 16:2609-14. [PMID: 26182910 DOI: 10.1002/cphc.201500334] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2015] [Indexed: 11/07/2022]
Abstract
Exo-2,3-epoxynorbornane is studied in the gas phase by pulsed jet Fourier transform microwave spectroscopy in the 4-18 GHz region. Six isotopologues were observed and characterized in their natural abundance. The experimental substitution and effective structures were obtained. Comparison with the structure of norbornane shows significant differences in several bond lengths and valence angles upon introduction of the epoxy group. All the work is supported by quantum chemical calculations.
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Affiliation(s)
- Patricia Écija
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV-EHU), Apartado 644, 48080 Bilbao (Spain)http://grupodeespectroscopia.es/MW/
| | - Iciar Uriarte
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV-EHU), Apartado 644, 48080 Bilbao (Spain)http://grupodeespectroscopia.es/MW/
| | - Francisco J Basterretxea
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV-EHU), Apartado 644, 48080 Bilbao (Spain)http://grupodeespectroscopia.es/MW/
| | - Judith Millán
- Departamento de Química, Facultad de Ciencias, Estudios Agroalimentarios e Informática, Universidad de La Rioja, 26006 Logroño (Spain)
| | - Alberto Lesarri
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, 47011 Valladolid (Spain)
| | - José A Fernández
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV-EHU), Apartado 644, 48080 Bilbao (Spain)http://grupodeespectroscopia.es/MW/
| | - Emilio J Cocinero
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV-EHU), Apartado 644, 48080 Bilbao (Spain)http://grupodeespectroscopia.es/MW/.
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6
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An ab initio study of structure, stability, and spectroscopic parameters of 5-atomic [C, C, H, N, S] isomers. J Mol Struct 2015. [DOI: 10.1016/j.molstruc.2015.01.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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7
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Jahn MK, Dewald D, Vallejo-López M, Cocinero EJ, Lesarri A, Grabow JU. Rotational spectra of bicyclic decanes: the trans conformation of (-)-lupinine. J Phys Chem A 2013; 117:13673-9. [PMID: 24028578 DOI: 10.1021/jp407671m] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The conformational and structural properties of the bicyclic quinolizidine alkaloid (-)-lupinine have been investigated in a supersonic jet expansion using microwave spectroscopy. The rotational spectrum is consistent with a single dominant trans conformation within a double-chair skeleton, which is stabilized by more than 10.4 kJ mol(-1) with respect to other conformations. In the isolated conditions of the jet, the hydroxy methyl side chain of the molecule locks in to form an intramolecular O-H···N hydrogen bond to the electron lone pair at the nitrogen atom. Accurate rotational constants, centrifugal distortion corrections, and (14)N nuclear quadrupole coupling parameters are reported and compared to ab initio (MP2) and DFT (M06-2X) calculations. The stability of lupinine is further compared computationally with epilupinine and decaline in order to gauge the influence of intramolecular hydrogen bonding, absent in these molecules.
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Affiliation(s)
- Michaela K Jahn
- Institut für Physikalische Chemie & Elektrochemie, Lehrgebiet A, Gottfried-Wilhelm-Leibniz Universität , Callinstraße 3A, D-30167 Hannover, Germany
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Écija P, Cocinero EJ, Lesarri A, Fernández JA, Caminati W, Castaño F. Rotational spectroscopy of antipyretics: conformation, structure, and internal dynamics of phenazone. J Chem Phys 2013; 138:114304. [PMID: 23534636 DOI: 10.1063/1.4794693] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The conformational and structural preferences of phenazone (antipyrine), the prototype of non-opioid pyrazolone antipyretics, have been probed in a supersonic jet expansion using rotational spectroscopy. The conformational landscape of the two-ring assembly was first explored computationally, but only a single conformer was predicted, with the N-phenyl and N-methyl groups on opposite sides of the pyrazolone ring. Consistently, the microwave spectrum evidenced a rotational signature arising from a single molecular structure. The spectrum exhibited very complicated fine and hyperfine patterns (not resolvable with any other spectroscopic technique) originated by the simultaneous coupling of the methyl group internal rotation and the spins of the two (14)N nuclei with the overall rotation. The internal rotation tunnelling was ascribed to the C-CH3 group and the barrier height established experimentally (7.13(10) kJ mol(-1)). The internal rotation of the N-CH3 group has a lower limit of 9.4 kJ mol(-1). The structure of the molecule was determined from the rotational parameters, with the phenyl group elevated ca. 25° with respect to the average plane of the pyrazolic moiety and a phenyl torsion of ca. 52°. The origin of the conformational preferences is discussed in terms of the competition between intramolecular C-H···N and C-H···O weak hydrogen bonds.
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Affiliation(s)
- Patricia Écija
- Departamento de Química Física, Universidad del País Vasco (UPV-EHU), Ap. 644, 48080 Bilbao, Spain
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Écija P, Cocinero EJ, Lesarri A, Basterretxea FJ, Fernández JA, Castaño F. The distorted tropane of scopoline. Chemphyschem 2013; 14:1830-5. [PMID: 23640872 DOI: 10.1002/cphc.201300199] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2013] [Indexed: 11/08/2022]
Abstract
The structural isomerization of scopine into scopoline (oscine) has been observed in a supersonic jet expansion using microwave spectroscopy. The rotational spectrum evidences a single structure in the gas phase, providing a first description of the (three-ring) structurally distorted tropane in scopoline. The absence of rotational signatures of any scopine conformation suggests a practically quantitative isomerization at the vaporization temperatures of the experiment (ca. 90 °C). The determined rotational parameters of scopoline reveal the structural consequences of the intramolecular cyclation of scopine, which breaks the original epoxy group and creates a new ether bridge and a 7β-hydroxytropane configuration. The hydroxy group further stabilizes the molecule by an O-H⋅⋅⋅N intramolecular hydrogen bond, which, in turn, forces the N-methyl group to the less stable axial form. Supporting ab initio (MP2) and DFT (B3LYP, M06-2X) calculations are included.
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Affiliation(s)
- Patricia Écija
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV-EHU), Apartado 644, 48080 Bilbao, Spain
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10
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Écija P, Basterretxea FJ, Lesarri A, Millán J, Castaño F, Cocinero EJ. Single Hydration of the Peptide Bond: The Case of the Vince Lactam. J Phys Chem A 2012; 116:10099-106. [DOI: 10.1021/jp3072734] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Patricia Écija
- Departamento de Química
Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU), Campus
de Leioa, Ap. 644, E-48080 Bilbao, Spain
| | - Francisco J. Basterretxea
- Departamento de Química
Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU), Campus
de Leioa, Ap. 644, E-48080 Bilbao, Spain
| | - Alberto Lesarri
- Departamento de Química
Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, E-47011 Valladolid, Spain
| | - Judith Millán
- Departamento de Química,
Facultad de Ciencias, Estudios Agroalimentarios e Informática, Universidad de La Rioja, E-26006 Logroño, Spain
| | - Fernando Castaño
- Departamento de Química
Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU), Campus
de Leioa, Ap. 644, E-48080 Bilbao, Spain
| | - Emilio J. Cocinero
- Departamento de Química
Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco (UPV/EHU), Campus
de Leioa, Ap. 644, E-48080 Bilbao, Spain
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Evangelisti L, Lesarri A, Jahn MK, Cocinero EJ, Caminati W, Grabow JU. N-Methyl Inversion and Structure of Six-Membered Heterocyclic Rings: Rotational Spectrum of 1-Methyl-4-piperidone. J Phys Chem A 2011; 115:9545-51. [DOI: 10.1021/jp112425w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Luca Evangelisti
- Dipartimento di Chimica “G. Ciamician”, Università di Bologna, Via Selmi, 2, I-40126 Bologna, Italy
| | - Alberto Lesarri
- Departamento de Química Física y Química Inorgánica, Facultad de Ciencias, Universidad de Valladolid, E-47011 Valladolid, Spain
| | - Michaela K. Jahn
- Institut für Physikalische Chemie & Elektrochemie, Lehrgebiet A, Gottfried-Wilhelm-Leibniz-Universität, Callinstrasse 3A, D-30167 Hannover, Germany
| | - Emilio J. Cocinero
- Departamento de Química Física, Facultad de Ciencia y Tecnología, Universidad del País Vasco, Ap. 644, E-48080 Bilbao, Spain
| | - Walther Caminati
- Dipartimento di Chimica “G. Ciamician”, Università di Bologna, Via Selmi, 2, I-40126 Bologna, Italy
| | - Jens-Uwe Grabow
- Institut für Physikalische Chemie & Elektrochemie, Lehrgebiet A, Gottfried-Wilhelm-Leibniz-Universität, Callinstrasse 3A, D-30167 Hannover, Germany
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Cocinero EJ, Basterretxea FJ, Écija P, Lesarri A, Fernández JA, Castaño F. Conformational behaviour, hydrogen bond competition and intramolecular dynamics in vanillin derivatives: acetovanillone and 6-hydroxy-3-methoxyacetophenone. Phys Chem Chem Phys 2011; 13:13310-8. [DOI: 10.1039/c0cp02418j] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
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