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Zhou D, Zhao B, Bai Y, Mukherjee S, Liu J, Bian H, Fang Y. Exploring the Structure and Complexation Dynamics of Azide Anion Recognition by Calix[4]pyrroles in Solution. J Phys Chem Lett 2022; 13:669-675. [PMID: 35023744 DOI: 10.1021/acs.jpclett.1c03962] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
The structure and anion recognition dynamics between calix[4]pyrroles and azide (N3-) anions in the form of its TBA+ and Na+ salts were investigated in dimethyl sulfoxide solutions by Fourier transform infrared (FTIR) spectroscopy and ultrafast IR spectroscopy. Vibrational energy redistribution of the N3- anion in the complex is accelerated through hydrogen bonding interactions with the N-H proton of the receptor. Rotational dynamics of the bound N3- is greatly restricted, demonstrating a distinct countercation effect. The detailed binding modes of N3- with the receptor were further evaluated by the density functional theoretical (DFT) calculations and nuclear magnetic resonance (NMR) spectroscopy. All of these measurements support the notion that the calix[4]pyrroles are capable of capturing the azide anion in solution. However, the calix[4]pyrroles may not necessarily undergo a conformational change to a cone-like geometry when they bind to the azide anion in the solution.
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Affiliation(s)
- Dexia Zhou
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Boxu Zhao
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Yimin Bai
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Somnath Mukherjee
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Jing Liu
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Hongtao Bian
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
| | - Yu Fang
- Key Laboratory of Applied Surface and Colloid Chemistry, Ministry of Education, School of Chemistry and Chemical Engineering, Shaanxi Normal University, Xi'an, 710119, China
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Straub S, Stubbe J, Lindner J, Sarkar B, Vöhringer P. Vibrational Relaxation Dynamics of an Azido–Cobalt(II) Complex from Femtosecond UV-Pump/MIR-Probe Spectroscopy and Model Simulations with Ab Initio Anharmonic Couplings. Inorg Chem 2020; 59:14629-14642. [DOI: 10.1021/acs.inorgchem.0c00553] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Steffen Straub
- Lehrstuhl für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Jessica Stubbe
- Institut für Chemie und Biochemie, Anorganische Chemie, Freie Universität Berlin, Fabeckstraße 34/34, 14195 Berlin, Germany
| | - Jörg Lindner
- Lehrstuhl für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Biprajit Sarkar
- Institut für Chemie und Biochemie, Anorganische Chemie, Freie Universität Berlin, Fabeckstraße 34/34, 14195 Berlin, Germany
- Lehrstuhl für Anorganische Koordinationschemie, Institut für Anorganische Chemie Universität Stuttgart, Pfaffenwaldring 55, 70569 Stuttgart, Germany
| | - Peter Vöhringer
- Lehrstuhl für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
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Straub S, Domenianni LI, Lindner J, Vöhringer P. Photoinduced Dynamics of a Diazidocobalt(III) Complex Studied by Femtosecond UV-Pump/IR-to-Vis-Probe Spectroscopy. J Phys Chem B 2019; 123:7893-7904. [DOI: 10.1021/acs.jpcb.9b07210] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Steffen Straub
- Abteilung für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstrasse 12, 53115 Bonn, Germany
| | - Luis I. Domenianni
- Abteilung für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstrasse 12, 53115 Bonn, Germany
| | - Jörg Lindner
- Abteilung für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstrasse 12, 53115 Bonn, Germany
| | - Peter Vöhringer
- Abteilung für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstrasse 12, 53115 Bonn, Germany
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Lee C, Son H, Park S. Effect of Hydrogen Bonds on the Vibrational Relaxation and Orientational Relaxation Dynamics of HN3 and N3(-) in Solutions. J Phys Chem B 2016; 120:9723-31. [PMID: 27537433 DOI: 10.1021/acs.jpcb.6b06239] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Hydrogen bonds (H-bonds) play an important role in determining the structures and dynamics of molecular systems. In this work, we investigated the effect of H-bonds on the vibrational population relaxation and orientational relaxation dynamics of HN3 and N3(-) in methanol (CH3OH) and N,N-dimethyl sulfoxide (DMSO) using polarization-controlled infrared pump-probe spectroscopy and quantum chemical calculations. Our detailed analysis of experimental and computational results reveals that both vibrational population relaxation and orientational relaxation dynamics of HN3 and N3(-) in CH3OH and DMSO are substantially dependent on the strength of the H-bonds between the probing solute and its surrounding solvent. Especially in the case of N3(-) in CH3OH, the vibrational population relaxation of N3(-) is found to occur by a direct intermolecular vibrational energy transfer to CH3OH due to large vibrational coupling strength. The orientational relaxation dynamics of HN3 and N3(-), which are well fit by a biexponential function, are analyzed by the wobbling-in-a-cone model and extended Debye-Stokes-Einstein equation. Depending on the intermolecular interactions, the slow overall orientational relaxation occurs under slip, stick, and superstick boundary conditions. For HN3 and N3(-) in CH3OH and DMSO, the vibrational population relaxation becomes faster but the orientational relaxation becomes slower as the H-bond strength is increased. Our current results imply that H-bonds have significant effects on the vibrational population relaxation and orientational relaxation dynamics of a small solute whose size is comparable to the size of the solvent.
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Affiliation(s)
- Chiho Lee
- Department of Chemistry, Korea University , Seoul 136-701, Korea
| | - Hyewon Son
- Department of Chemistry, Korea University , Seoul 136-701, Korea
| | - Sungnam Park
- Department of Chemistry, Korea University , Seoul 136-701, Korea
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5
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Czurlok D, Torres-Alacan J, Vöhringer P. Ultrafast 2DIR spectroscopy of ferric azide precursors for high-valent iron. Vibrational relaxation, spectral diffusion, and dynamic symmetry breaking. J Chem Phys 2015; 142:212402. [DOI: 10.1063/1.4914154] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Affiliation(s)
- Denis Czurlok
- Abteilung für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Joel Torres-Alacan
- Abteilung für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Peter Vöhringer
- Abteilung für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
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Karmakar A, Chandra A. Ab initio molecular dynamics studies of hydrogen bonded structure, molecular motion, and frequency fluctuations of water in the vicinity of azide ions. J Chem Phys 2015; 142:164505. [DOI: 10.1063/1.4918579] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Affiliation(s)
- Anwesa Karmakar
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
| | - Amalendu Chandra
- Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur 208016, India
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7
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Czurlok D, von Domaros M, Thomas M, Gleim J, Lindner J, Kirchner B, Vöhringer P. Femtosecond 2DIR spectroscopy of the nitrile stretching vibration of thiocyanate anions in liquid-to-supercritical heavy water. Spectral diffusion and libration-induced hydrogen-bond dynamics. Phys Chem Chem Phys 2015; 17:29776-85. [DOI: 10.1039/c5cp05237h] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Femtosecond two-dimensional infrared (2DIR) spectroscopy was carried out to study the dynamics of vibrational spectral diffusion of the nitrile stretching vibration of thiocyanate.
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Affiliation(s)
- Denis Czurlok
- Institut für Physikalische und Theoretische Chemie
- Rheinische Friedrich-Wilhelms-Universität
- 53115 Bonn
- Germany
| | - Michael von Domaros
- Institut für Physikalische und Theoretische Chemie
- Rheinische Friedrich-Wilhelms-Universität
- 53115 Bonn
- Germany
| | - Martin Thomas
- Institut für Physikalische und Theoretische Chemie
- Rheinische Friedrich-Wilhelms-Universität
- 53115 Bonn
- Germany
| | - Jeannine Gleim
- Institut für Physikalische und Theoretische Chemie
- Rheinische Friedrich-Wilhelms-Universität
- 53115 Bonn
- Germany
| | - Jörg Lindner
- Institut für Physikalische und Theoretische Chemie
- Rheinische Friedrich-Wilhelms-Universität
- 53115 Bonn
- Germany
| | - Barbara Kirchner
- Institut für Physikalische und Theoretische Chemie
- Rheinische Friedrich-Wilhelms-Universität
- 53115 Bonn
- Germany
| | - Peter Vöhringer
- Institut für Physikalische und Theoretische Chemie
- Rheinische Friedrich-Wilhelms-Universität
- 53115 Bonn
- Germany
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8
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Torres-Alacan J, Vöhringer P. Generating high-valent iron with light: photochemical dynamics from femtoseconds to seconds. INT REV PHYS CHEM 2014. [DOI: 10.1080/0144235x.2014.973197] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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9
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Czurlok D, Gleim J, Lindner J, Vöhringer P. Vibrational Energy Relaxation of Thiocyanate Ions in Liquid-to-Supercritical Light and Heavy Water. A Fermi's Golden Rule Analysis. J Phys Chem Lett 2014; 5:3373-3379. [PMID: 26278447 DOI: 10.1021/jz501710c] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
The vibrational relaxation dynamics following an ultrafast nitrile stretching (ν3) excitation of thiocyanate anions dissolved in light and heavy water have been studied over a wide temperature and density range corresponding to the aqueous liquid up to the supercritical phase. In both solvents, the relaxation of the ν3 = 1 state of the anion leads to a direct recovery of the vibrational ground state and involves the resonant transfer of the excess vibrational energy onto the solvent. In light water, the energy-accepting states are provided by the bending-librational combination band (νb + νL), while in heavy water, the relaxation is thermally assisted by virtual acceptor states derived from the stretching-librational/restricted translational hot band (νS - νL,T). The relaxation rate is found to strictly obey Fermi's Golden Rule when the density of resonant solvent states is estimated from the linear infrared spectra of the solute and the pure solvents.
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Affiliation(s)
- Denis Czurlok
- Lehrstuhl für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Jeannine Gleim
- Lehrstuhl für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Jörg Lindner
- Lehrstuhl für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
| | - Peter Vöhringer
- Lehrstuhl für Molekulare Physikalische Chemie, Institut für Physikalische und Theoretische Chemie, Rheinische Friedrich-Wilhelms-Universität, Wegelerstraße 12, 53115 Bonn, Germany
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10
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Compton R, Gerardi HK, Weidinger D, Brown DJ, Dressick WJ, Heilweil EJ, Owrutsky JC. Spectra and relaxation dynamics of the pseudohalide (PS) vibrational bands for Ru(bpy)2(PS)2 complexes, PS=CN, NCS and N3. Chem Phys 2013. [DOI: 10.1016/j.chemphys.2012.11.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
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Osawa K, Terazima M, Kimura Y. Electron Transfer Reaction Dynamics of p-Nitroaniline in Water from Liquid to Supercritical Conditions. J Phys Chem B 2012; 116:11508-16. [DOI: 10.1021/jp305970r] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Koji Osawa
- Department of Chemistry, Graduate School
of Science, Kyoto University, Kyoto 606-8502,
Japan
| | - Masahide Terazima
- Department of Chemistry, Graduate School
of Science, Kyoto University, Kyoto 606-8502,
Japan
| | - Yoshifumi Kimura
- Department of Chemistry, Graduate School
of Science, Kyoto University, Kyoto 606-8502,
Japan
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12
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King JT, Ross MR, Kubarych KJ. Water-Assisted Vibrational Relaxation of a Metal Carbonyl Complex Studied with Ultrafast 2D-IR. J Phys Chem B 2012; 116:3754-9. [DOI: 10.1021/jp2125747] [Citation(s) in RCA: 58] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- John T. King
- Department
of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, Michigan
48109, United States
| | - Matthew R. Ross
- Department
of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, Michigan
48109, United States
| | - Kevin J. Kubarych
- Department
of Chemistry, University of Michigan, 930 North University Avenue, Ann Arbor, Michigan
48109, United States
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