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A Cost Effective Scheme for the Highly Accurate Description of Intermolecular Binding in Large Complexes. Int J Mol Sci 2022; 23:ijms232415773. [PMID: 36555413 PMCID: PMC9780852 DOI: 10.3390/ijms232415773] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 11/23/2022] [Accepted: 12/07/2022] [Indexed: 12/15/2022] Open
Abstract
There has been a growing interest in quantitative predictions of the intermolecular binding energy of large complexes. One of the most important quantum chemical techniques capable of such predictions is the domain-based local pair natural orbital (DLPNO) scheme for the coupled cluster theory with singles, doubles, and iterative triples [CCSD(T)], whose results are extrapolated to the complete basis set (CBS) limit. Here, the DLPNO-based focal-point method is devised with the aim of obtaining CBS-extrapolated values that are very close to their canonical CCSD(T)/CBS counterparts, and thus may serve for routinely checking a performance of less expensive computational methods, for example, those based on the density-functional theory (DFT). The efficacy of this method is demonstrated for several sets of noncovalent complexes with varying amounts of the electrostatics, induction, and dispersion contributions to binding (as revealed by accurate DFT-based symmetry-adapted perturbation theory (SAPT) calculations). It is shown that when applied to dimeric models of poly(3-hydroxybutyrate) chains in its two polymorphic forms, the DLPNO-CCSD(T) and DFT-SAPT computational schemes agree to within about 2 kJ/mol of an absolute value of the interaction energy. These computational schemes thus should be useful for a reliable description of factors leading to the enthalpic stabilization of extended systems.
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2
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Czernek J, Brus J, Czerneková V. A computational inspection of the dissociation energy of mid-sized organic dimers. J Chem Phys 2022; 156:204303. [DOI: 10.1063/5.0093557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
The gas-phase value of the dissociation energy ( D0) is a key parameter employed in both experimental and theoretical descriptions of noncovalent complexes. The D0 data were obtained for a set of mid-sized organic dimers in their global minima which was located using geometry optimizations that applied ample basis sets together with either the conventional second-order Møller–Plesset (MP2) method or several dispersion-corrected density-functional theory (DFT-D) schemes. The harmonic vibrational zero-point (VZP) and deformation energies from the MP2 calculations were combined with electronic energies from the coupled cluster theory with singles, doubles, and iterative triples [CCSD(T)] extrapolated to the complete basis set (CBS) limit to estimate D0 with the aim of inspecting values that were most recently measured, and an analogous comparison was performed using the DFT-D data. In at least one case (namely, for the aniline⋯methane cluster), the D0 estimate that employed the CCSD(T)/CBS energies differed from experiment in the way that could not be explained by a possible deficiency in the VZP contribution. Curiously, one of the DFT-D schemes (namely, the B3LYP-D3/def2-QZVPPD) was able to reproduce all measured D0 values to within 1.0 kJ/mol from experimental error bars. These findings show the need for further measurements and computations of some of the complexes. In order to facilitate such studies, the physical nature of intermolecular interactions in the investigated dimers was analyzed by means of the DFT-based symmetry-adapted perturbation theory.
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Affiliation(s)
- Jiří Czernek
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Heyrovsky Square 2, 162 06 Praha 6, The Czech Republic
| | - Jiří Brus
- Institute of Macromolecular Chemistry, Czech Academy of Sciences, Heyrovsky Square 2, 162 06 Praha 6, The Czech Republic
| | - Vladimíra Czerneková
- Institute of Physics, Czech Academy of Sciences, Na Slovance 2, 182 21 Praha 8, The Czech Republic
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3
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Demir S, Tekin A. FFCASP: A Massively Parallel Crystal Structure Prediction Algorithm. J Chem Theory Comput 2021; 17:2586-2598. [PMID: 33798330 DOI: 10.1021/acs.jctc.0c01197] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
A new algorithm called Fast and Flexible CrystAl Structure Predictor (FFCASP) was developed to predict the structure of covalent and molecular crystals. FFCASP is massively parallel and able to handle more than 200 atoms in the unit cell (in other terms, it allows global optimization around 100 individual parameters). It uses a global optimizer specialized for Crystal Structure Prediction (CSP) which combines particle swarm and simulated annealing optimizers. Three different molecular crystals, including diverse intermolecular interactions, namely, cytosine, coumarin, and pyrazinamide, have been selected to evaluate the performance of FFCASP. While cytosine polymorphs have been searched by employing two different force fields (a DFT-SAPT based intermolecular potential and generalized amber force field (GAFF)) up to Z = 16, only GAFF has been used both in coumarin and pyrazinamide polymorph searches up to Z = 4. For these three molecular crystals, FFCASP generated more than 20 000 crystal structures, and the unique ones have been further treated by DFT-D3. A combination of data mining and a machine learning approach was introduced to determine the unique structures and their distribution into different clusters, which ultimately gives an opportunity to retrieve the common features and relations between the resulting structures. There are two known experimental crystal structures of cytosine, and both were successfully located with FFCASP. Two of the reported crystal structures of coumarin have been reproduced. Similarly, in pyrazinamide, three known experimental structures have been rediscovered. In addition to finding the experimentally known structures, FFCASP also located other low-energy structures for each considered molecular crystals. These successes of FFCASP offer the possibility to discover the polymorphic nature of other important molecular crystals (e.g., drugs) as well.
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Affiliation(s)
- Samet Demir
- Informatics Institute, Istanbul Technical University, 34469 Maslak, Istanbul, Turkey.,TÜBİTAK Research Institute for Fundamental Sciences, 41470 Gebze, Kocaeli, Turkey
| | - Adem Tekin
- Informatics Institute, Istanbul Technical University, 34469 Maslak, Istanbul, Turkey.,TÜBİTAK Research Institute for Fundamental Sciences, 41470 Gebze, Kocaeli, Turkey
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4
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Ohno K, Oki T, Yamakado H. Quantum Chemical Exploration of Intermolecular Reactions of Acetylene. J Comput Chem 2020; 41:687-697. [PMID: 31793029 DOI: 10.1002/jcc.26120] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 11/12/2019] [Accepted: 11/12/2019] [Indexed: 11/09/2022]
Abstract
Quantum chemical explorations of potential energy surfaces showed that acetylene produces various products starting from molecular arrays in short distances of 1.3-2.5 Å. Arrays of (C2 H2 )2 gave cyclobutadiene, tetrahedrane, and acetylene dimers. Arrays of (C2 H2 )3 gave benzene, prismane, benzvalene, Dewar benzene, and acetylene trimers. Arrays of (C2 H2 )4 gave cubane, cyclooctatetranene, and acetylene tetramers. Different forms of initial arrays yielded different sets of products; a parallel array of two monomers gave cyclobutadiene, whereas a cross array gave tetrahedrane. Initial molecular arrays with unusually close contacts were estimated to require local forces of 1-9 × 10-8 N. © 2019 Wiley Periodicals, Inc.
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Affiliation(s)
- Koichi Ohno
- Institute for Quantum Chemical Exploration, Konan 1-9-36, Minato-ku, Tokyo, 108-0075, Japan.,Tohoku University, Graduate School of Science, Aramaki Aza-Aoba 6-3, Aoba-ku, Sendai, Miyagi, 980-8578, Japan
| | - Takuto Oki
- Faculty of Systems Engineering, Wakayama University, Sakaedani 930, Wakayama, Wakayama, 640-8510, Japan
| | - Hideo Yamakado
- Faculty of Systems Engineering, Wakayama University, Sakaedani 930, Wakayama, Wakayama, 640-8510, Japan
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5
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Tekin A. Towards the crystal structure of thymine: An intermolecular force field development and parallel global cluster optimizations. J Chem Phys 2019; 151:244302. [DOI: 10.1063/1.5131754] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023] Open
Affiliation(s)
- Adem Tekin
- Informatics Institute, Istanbul Technical University, 34469 Maslak, Istanbul, Turkey
- Research Institute for Fundamental Sciences (TÜBİTAK-TBAE), 41470 Gebze, Kocaeli, Turkey
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6
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Patkowski K. Recent developments in symmetry‐adapted perturbation theory. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2019. [DOI: 10.1002/wcms.1452] [Citation(s) in RCA: 53] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Affiliation(s)
- Konrad Patkowski
- Department of Chemistry and Biochemistry Auburn University Auburn Alabama
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7
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Abstract
Symmetry Adapted Perturbation Theory (SAPT) has become an important tool when predicting and analyzing intermolecular interactions. Unfortunately, Density Functional Theory (DFT)-SAPT, which uses DFT for the underlying monomers, has some arbitrariness concerning the exchange-correlation potential and the exchange-correlation kernel involved. By using ab initio Brueckner Doubles densities and constructing Kohn-Sham orbitals via the Zhao-Morrison-Parr (ZMP) method, we are able to lift the dependence of DFT-SAPT on DFT exchange-correlation potential models in first order. This way, we can compute the monomers at the coupled-cluster level of theory and utilize SAPT for the intermolecular interaction energy. The resulting ZMP-SAPT approach is tested for small dimer systems involving rare gas atoms, cations, and anions and shown to compare well with the Tang-Toennies model and coupled cluster results.
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Affiliation(s)
- A Daniel Boese
- Institute of Chemistry, Physical and Theoretical Chemistry, University of Graz, Heinrichstrasse 28/IV, 8010 Graz, Austria
| | - Georg Jansen
- Faculty of Chemistry, University of Duisburg-Essen, Universitätsstraße 5, 45117 Essen, Germany
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8
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Orr BJ. Collision-induced rovibrational energy transfer in small polyatomic molecules: the role of intramolecular perturbations. Mol Phys 2018. [DOI: 10.1080/00268976.2018.1490463] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- Brian J. Orr
- Department of Physics and Astronomy, MQ Photonics Research Centre, Macquarie University, Sydney, Australia
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9
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Gutiérrez-Quintanilla A, Briant M, Mengesha E, Gaveau MA, Mestdagh JM, Soep B, Crépin C, Poisson L. A HElium NanoDroplet Isolation (HENDI) investigation of the weak hydrogen bonding in the propyne dimer (CH3CCH)2. Phys Chem Chem Phys 2018; 20:28658-28666. [DOI: 10.1039/c8cp04738c] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A HElium Nanodroplet Isolation (HENDI) experiment was performed to explore the absorption spectra of the propyne monomer (CH3CCH), dimer and (CH3CCH)≥3 multimers in the vicinity of the CH stretch region ν1 of the monomer.
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Affiliation(s)
| | - M. Briant
- LIDYL
- CEA
- CNRS
- Université Paris-Saclay
- CEA Saclay
| | - E. Mengesha
- LIDYL
- CEA
- CNRS
- Université Paris-Saclay
- CEA Saclay
| | | | | | - B. Soep
- LIDYL
- CEA
- CNRS
- Université Paris-Saclay
- CEA Saclay
| | - C. Crépin
- Institut des Sciences Moléculaires d'Orsay (ISMO)
- UMR 8214
- CNRS
- F-91405 Orsay
- France
| | - L. Poisson
- LIDYL
- CEA
- CNRS
- Université Paris-Saclay
- CEA Saclay
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10
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Karatosun A, Çankaya M, Tekin A. Symmetry-adapted perturbation theory potential for the adenine dimer. Phys Chem Chem Phys 2018; 20:26303-26314. [DOI: 10.1039/c8cp03798a] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
Abstract
A new ab initio intermolecular interaction potential for the adenine dimer has been developed.
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Affiliation(s)
- Armağan Karatosun
- Informatics Institute, Istanbul Technical University
- 34469 Maslak
- Turkey
| | - Mehmet Çankaya
- Informatics Institute, Istanbul Technical University
- 34469 Maslak
- Turkey
| | - Adem Tekin
- Informatics Institute, Istanbul Technical University
- 34469 Maslak
- Turkey
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11
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Briant M, Mengesha E, Gaveau MA, Soep B, Mestdagh JM, Poisson L. Dynamics of acetylene dimers hosted in helium droplets. Phys Chem Chem Phys 2018; 20:2597-2605. [DOI: 10.1039/c7cp07741f] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The CH antisymmetric stretch of the C2H2 moieties in acetylene dimers was explored over the range 3270–3290 cm−1 using the helium nanodroplet isolation (HENDI) technique.
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Affiliation(s)
- M. Briant
- LIDYL
- CEA
- CNRS
- Université Paris-Saclay
- CEA Saclay
| | - E. Mengesha
- LIDYL
- CEA
- CNRS
- Université Paris-Saclay
- CEA Saclay
| | | | - B. Soep
- LIDYL
- CEA
- CNRS
- Université Paris-Saclay
- CEA Saclay
| | | | - L. Poisson
- LIDYL
- CEA
- CNRS
- Université Paris-Saclay
- CEA Saclay
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12
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Manukyan A, Tekin A. The intermolecular dimer potential for guanine. J Chem Phys 2017; 147:154311. [DOI: 10.1063/1.4998792] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Affiliation(s)
- Artür Manukyan
- Informatics Institute, Istanbul Technical University, 34469 Maslak, Istanbul, Turkey
| | - Adem Tekin
- Informatics Institute, Istanbul Technical University, 34469 Maslak, Istanbul, Turkey
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13
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Sedlak R, Řezáč J. Empirical D3 Dispersion as a Replacement for ab Initio Dispersion Terms in Density Functional Theory-Based Symmetry-Adapted Perturbation Theory. J Chem Theory Comput 2017; 13:1638-1646. [DOI: 10.1021/acs.jctc.6b01198] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Robert Sedlak
- Institute
of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 166 10 Prague 6, Czech Republic
- Regional
Centre of Advanced Technologies and Materials, Department of Physical
Chemistry, Palacký University, 771 46 Olomouc, Czech Republic
| | - Jan Řezáč
- Institute
of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 166 10 Prague 6, Czech Republic
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14
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Lehmann KK. Influence of resonant collisions on the self-broadening of acetylene. J Chem Phys 2017. [DOI: 10.1063/1.4977726] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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15
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Abstract
Hydrogen bond directionality in the water dimer is explained on the basis of symmetry-adapted intermolecular perturbation theory which directly separates the intermolecular interaction energy into four physically interpretable components: electrostatics, exchange-repulsion, dispersion, and induction. Analysis of these four main contributions to the binding energy allows a deeper understanding of the dominant factors ruling the mutual arrangement of the two monomers. A preference for the linear configuration is shown to be due to a subtle interplay of all four energy components. While the first-order terms, electrostatic and exchange-repulsion, almost perfectly cancel each other near the equilibrium geometry of the dimer, the importance of the second- and higher-order terms, induction and dispersion, becomes evident.
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Affiliation(s)
- Maxim Tafipolsky
- Institut für Physikalische und Theoretische Chemie, Universität Würzburg, Campus Hubland Nord , Emil-Fischer-Strasse 42, D-97074 Würzburg, Germany
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16
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Herman M, Földes T, Didriche K, Lauzin C, Vanfleteren T. Overtone spectroscopy of molecular complexes containing small polyatomic molecules. INT REV PHYS CHEM 2016. [DOI: 10.1080/0144235x.2016.1171039] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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17
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Van Dornshuld E, Tschumper GS. Big Changes for Small Noncovalent Dimers: Revisiting the Potential Energy Surfaces of (P2)2 and (PCCP)2 with CCSD(T) Optimizations and Vibrational Frequencies. J Chem Theory Comput 2016; 12:1534-41. [PMID: 26999433 DOI: 10.1021/acs.jctc.5b01105] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
This article details the re-examination of low-lying stationary points on the potential energy surfaces (PESs) of two challenging noncovalent homogeneous dimers, (P2)2 and (PCCP)2. The work was motivated by the rather large differences between MP2 and CCSD(T) energetics that were recently reported for these systems (J. Comput. Chem. 2014, 35, 479-487). The current investigation reveals significant qualitative and quantitative changes when the CCSD(T) method is used to characterize the stationary points instead of MP2. For example, CCSD(T) optimizations and harmonic vibrational frequency computations with the aug-cc-pVTZ basis set indicate that the parallel-slipped (PS) structure is the only P2 dimer stationary point examined that is a minimum (zero imaginary frequencies, ni = 0), whereas prior MP2 computations indicated that it was a transition state (ni = 1). Furthermore, the L-shaped structure of (P2)2 was the only minimum according to MP2 computations, but it collapses to the PS structure on the CCSD(T)/aug-cc-pVTZ PES. For the larger PCCP dimer, the CCSD(T) computations reveal that four rather than just two of the six stationary points characterized are minima. A series of explicitly correlated single-point energies were computed for all of the optimized structures to estimate the MP2 and CCSD(T) electronic energies at the complete basis set limit. CCSDT(Q) computations were also performed to assess the effects of dynamical electron correlation beyond the CCSD(T) level. For both (P2)2 and (PCCP)2, dispersion remains the dominant attractive component to the interaction energy according to symmetry-adapted perturbation theory analyses, and it is also the most challenging component to accurately evaluate.
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Affiliation(s)
- Eric Van Dornshuld
- Department of Chemistry and Biochemistry, University of Mississippi , University, Mississippi 38677-1848, United States
| | - Gregory S Tschumper
- Department of Chemistry and Biochemistry, University of Mississippi , University, Mississippi 38677-1848, United States
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18
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Tafipolsky M, Ansorg K. Toward a Physically Motivated Force Field: Hydrogen Bond Directionality from a Symmetry-Adapted Perturbation Theory Perspective. J Chem Theory Comput 2016; 12:1267-79. [DOI: 10.1021/acs.jctc.5b01057] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Maxim Tafipolsky
- Institut
für Physikalische
und Theoretische Chemie, Universität Würzburg, Campus
Hubland Nord, Emil-Fischer-Strasse 42, D-97074 Würzburg, Germany
| | - Kay Ansorg
- Institut
für Physikalische
und Theoretische Chemie, Universität Würzburg, Campus
Hubland Nord, Emil-Fischer-Strasse 42, D-97074 Würzburg, Germany
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19
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Heßelmann A, Korona T. Intermolecular symmetry-adapted perturbation theory study of large organic complexes. J Chem Phys 2015; 141:094107. [PMID: 25194364 DOI: 10.1063/1.4893990] [Citation(s) in RCA: 67] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/15/2022] Open
Abstract
Binding energies for the complexes of the S12L database by Grimme [Chem. Eur. J. 18, 9955 (2012)] were calculated using intermolecular symmetry-adapted perturbation theory combined with a density-functional theory description of the interacting molecules. The individual interaction energy decompositions revealed no particular change in the stabilisation pattern as compared to smaller dimer systems at equilibrium structures. This demonstrates that, to some extent, the qualitative description of the interaction of small dimer systems may be extrapolated to larger systems, a method that is widely used in force-fields in which the total interaction energy is decomposed into atom-atom contributions. A comparison of the binding energies with accurate experimental reference values from Grimme, the latter including thermodynamic corrections from semiempirical calculations, has shown a fairly good agreement to within the error range of the reference binding energies.
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Affiliation(s)
- Andreas Heßelmann
- Lehrstuhl für Theoretische Chemie, Universität Erlangen-Nürnberg, Egerlandstr. 3, D-91058 Erlangen, Germany
| | - Tatiana Korona
- Faculty of Chemistry, University of Warsaw, Pasteura 1, 02-093 Warsaw, Poland
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20
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Manukyan A, Tekin A. First principles potential for the cytosine dimer. Phys Chem Chem Phys 2015; 17:14685-701. [DOI: 10.1039/c5cp00553a] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
A new first principles potential for the cytosine dimer.
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Affiliation(s)
- Artür Manukyan
- Informatics Institute
- Istanbul Technical University
- Istanbul
- Turkey
| | - Adem Tekin
- Informatics Institute
- Istanbul Technical University
- Istanbul
- Turkey
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21
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Földes T, Lauzin C, Vanfleteren T, Herman M, Liévin J, Didriche K. High-resolution, near-infrared CW-CRDS, andab initioinvestigations of N2O–HDO. Mol Phys 2014. [DOI: 10.1080/00268976.2014.953611] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/24/2022]
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22
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Jackson NE, Chen LX, Ratner MA. Solubility of Nonelectrolytes: A First-Principles Computational Approach. J Phys Chem B 2014; 118:5194-202. [DOI: 10.1021/jp5024197] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Nicholas E. Jackson
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
| | - Lin X. Chen
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
- Chemical
Sciences and Engineering Division, Argonne National Laboratory, Lemont, Illinois 60439, United States
| | - Mark A. Ratner
- Department
of Chemistry, Northwestern University, Evanston, Illinois 60208, United States
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23
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Van Dornshuld E, Tschumper GS. Characterization of the potential energy surfaces of two small but challenging noncovalent dimers: (P2 )2 and (PCCP)2. J Comput Chem 2014; 35:479-87. [PMID: 24403058 DOI: 10.1002/jcc.23522] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2013] [Accepted: 12/18/2013] [Indexed: 01/19/2023]
Abstract
This work characterizes eight stationary points of the P2 dimer and six stationary points of the PCCP dimer, including a newly identified minimum on both potential energy surfaces. Full geometry optimizations and corresponding harmonic vibrational frequencies were computed with the second-order Møller-Plesset (MP2) electronic structure method and six different basis sets: aug-cc-pVXZ, aug-cc-pV(X+d)Z, and aug-cc-pCVXZ where X = T, Q. A new L-shaped structure with C2 symmetry is the only minimum for the P2 dimer at the MP2 level of theory with these basis sets. The previously reported parallel-slipped structure with C2 h symmetry and a newly identified cross configuration with D2 symmetry are the only minima for the PCCP dimer. Single point energies were also computed using the canonical MP2 and CCSD(T) methods as well as the explicitly correlated MP2-F12 and CCSD(T)-F12 methods and the aug-cc-pVXZ (X = D, T, Q, 5) basis sets. The energetics obtained with the explicitly correlated methods were very similar to the canonical results for the larger basis sets. Extrapolations were performed to estimate the complete basis set (CBS) limit MP2 and CCSD(T) binding energies. MP2 and MP2-F12 significantly overbind the P2 and PCCP dimers relative to the CCSD(T) and CCSD(T)-F12 binding energies by as much as 1.5 kcal mol(-1) for the former and 5.0 kcal mol(-1) for the latter at the CBS limit. The dominant attractive component of the interaction energy for each dimer configuration was dispersion according to several symmetry-adapted perturbation theory analyses.
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Affiliation(s)
- Eric Van Dornshuld
- Department of Chemistry and Biochemistry, University of Mississippi, MS 38677-1848
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24
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de Lara-Castells MP, Stoll H, Mitrushchenkov AO. Assessing the Performance of Dispersionless and Dispersion-Accounting Methods: Helium Interaction with Cluster Models of the TiO2(110) Surface. J Phys Chem A 2014; 118:6367-84. [DOI: 10.1021/jp412765t] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
Affiliation(s)
| | - Hermann Stoll
- Institut für Theoretische Chemie, Universität Stuttgart, D-70550 Stuttgart, Germany
| | - Alexander O. Mitrushchenkov
- Laboratoire Modélisation et Simulation Multi Echelle, MSME
UMR 8208 CNRS, Université Paris-Est, 5 bd Descartes, 77454 Marne-la-Vallée, France
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25
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Moazzen-Ahmadi N, McKellar A. Spectroscopy of dimers, trimers and larger clusters of linear molecules. INT REV PHYS CHEM 2013. [DOI: 10.1080/0144235x.2013.813799] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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26
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Jansen G. Symmetry‐adapted perturbation theory based on density functional theory for noncovalent interactions. WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE 2013. [DOI: 10.1002/wcms.1164] [Citation(s) in RCA: 130] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/30/2023]
Affiliation(s)
- Georg Jansen
- Theoretical Organic Chemistry, Department of ChemistryUniversity Duisburg‐EssenEssenGermany
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Ansorg K, Tafipolsky M, Engels B. Cation−π Interactions: Accurate Intermolecular Potential from Symmetry-Adapted Perturbation Theory. J Phys Chem B 2013; 117:10093-102. [DOI: 10.1021/jp403578r] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Kay Ansorg
- Institut
für Physikalische und Theoretische
Chemie, Universität Würzburg, Campus Hubland Nord, Emil-Fischer-Strasse 42, D-97074 Würzburg,
Germany
| | - Maxim Tafipolsky
- Institut
für Physikalische und Theoretische
Chemie, Universität Würzburg, Campus Hubland Nord, Emil-Fischer-Strasse 42, D-97074 Würzburg,
Germany
| | - Bernd Engels
- Institut
für Physikalische und Theoretische
Chemie, Universität Würzburg, Campus Hubland Nord, Emil-Fischer-Strasse 42, D-97074 Würzburg,
Germany
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28
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Kočišek J, Lengyel J, Fárník M. Ionization of large homogeneous and heterogeneous clusters generated in acetylene–Ar expansions: Cluster ion polymerization. J Chem Phys 2013; 138:124306. [DOI: 10.1063/1.4796262] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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29
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Böning M, Stuhlmann B, Engler G, Busker M, Häber T, Tekin A, Jansen G, Kleinermanns K. Towards a Spectroscopic and Theoretical Identification of the Isolated Building Blocks of the Benzene–Acetylene Cocrystal. Chemphyschem 2012. [DOI: 10.1002/cphc.201200701] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Markus Böning
- Institut für Physikalische Chemie, Heinrich‐Heine Universität Düsseldorf, Universitätsstr. 1, 40225 Düsseldorf (Germany)
| | - Benjamin Stuhlmann
- Institut für Physikalische Chemie, Heinrich‐Heine Universität Düsseldorf, Universitätsstr. 1, 40225 Düsseldorf (Germany)
| | - Gernot Engler
- Institut für Physikalische Chemie, Heinrich‐Heine Universität Düsseldorf, Universitätsstr. 1, 40225 Düsseldorf (Germany)
| | - Matthias Busker
- Institut für Physikalische Chemie, Heinrich‐Heine Universität Düsseldorf, Universitätsstr. 1, 40225 Düsseldorf (Germany)
| | - Thomas Häber
- Institut für Physikalische Chemie, Heinrich‐Heine Universität Düsseldorf, Universitätsstr. 1, 40225 Düsseldorf (Germany)
- Current address: Karlsruher Institut für Technologie (KIT), Engler‐Bunte‐Institut, Bereich Verbrennungstechnik, Engler‐Bunte‐Ring 1, 76131 Karlsruhe (Germany)
| | - Adem Tekin
- Informatics Institute, Istanbul Technical University, 34469 Maslak, Istanbul (Turkey)
| | - Georg Jansen
- Fakultät für Chemie, Universität Duisburg‐Essen, Universitätsstr. 5, 45117 Essen (Germany)
| | - Karl Kleinermanns
- Institut für Physikalische Chemie, Heinrich‐Heine Universität Düsseldorf, Universitätsstr. 1, 40225 Düsseldorf (Germany)
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30
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Lauzin C, Cauët E, Demaison J, Herman M, Stoll H, Liévin J. Accurate ground-state potential energy surfaces of the C2H2–Kr and C2H2–Xe van der Waals complexes. Mol Phys 2012. [DOI: 10.1080/00268976.2012.713524] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Affiliation(s)
- C. Lauzin
- a Service de Chimie quantique et Photophysique, CP160/09 , Université Libre de Bruxelles , 50 ave. F. D. Roosevelt, B-1050 Brussels, Belgium
| | - E. Cauët
- a Service de Chimie quantique et Photophysique, CP160/09 , Université Libre de Bruxelles , 50 ave. F. D. Roosevelt, B-1050 Brussels, Belgium
| | - J. Demaison
- b Laboratoire de Physique des Lasers, Atomes, et Molécules , Université de Lille I , F-59655 Villeneuve d'Ascq Cédex, France
| | - M. Herman
- b Laboratoire de Physique des Lasers, Atomes, et Molécules , Université de Lille I , F-59655 Villeneuve d'Ascq Cédex, France
| | - H. Stoll
- c Institut für Theoretische Chemie, Universität Stuttgart , D-70550 Stuttgart , Germany
| | - J. Liévin
- a Service de Chimie quantique et Photophysique, CP160/09 , Université Libre de Bruxelles , 50 ave. F. D. Roosevelt, B-1050 Brussels, Belgium
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31
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Didriche K, Földes T, Lauzin C, Golebiowski D, Liévin J, Herman M. Experimental 2CH excitation in acetylene-containing van der Waals complexes. Mol Phys 2012. [DOI: 10.1080/00268976.2012.705347] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
Affiliation(s)
- K. Didriche
- a Laboratoire de Chimie quantique et Photophysique , Université libre de Bruxelles , Bruxelles , Belgium
| | - T. Földes
- a Laboratoire de Chimie quantique et Photophysique , Université libre de Bruxelles , Bruxelles , Belgium
| | - C. Lauzin
- a Laboratoire de Chimie quantique et Photophysique , Université libre de Bruxelles , Bruxelles , Belgium
| | - D. Golebiowski
- a Laboratoire de Chimie quantique et Photophysique , Université libre de Bruxelles , Bruxelles , Belgium
| | - J. Liévin
- a Laboratoire de Chimie quantique et Photophysique , Université libre de Bruxelles , Bruxelles , Belgium
| | - M. Herman
- a Laboratoire de Chimie quantique et Photophysique , Université libre de Bruxelles , Bruxelles , Belgium
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32
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Kuchenbecker D, Jansen G. Intermolecular Interactions in Weak Donor-Acceptor Complexes from Symmetry-Adapted Perturbation and Coupled-Cluster Theory: Tetracyanoethylene-Benzene and Tetracyanoethylene-p-Xylene. Chemphyschem 2012; 13:2769-76. [DOI: 10.1002/cphc.201200164] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/24/2012] [Revised: 04/23/2012] [Indexed: 11/12/2022]
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33
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Kollipost F, Larsen RW, Domanskaya AV, Nörenberg M, Suhm MA. Communication: The highest frequency hydrogen bond vibration and an experimental value for the dissociation energy of formic acid dimer. J Chem Phys 2012; 136:151101. [DOI: 10.1063/1.4704827] [Citation(s) in RCA: 69] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
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